HEADER    DNA                                     16-OCT-97   1AXL              
TITLE     SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A  
TITLE    2 DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR,
TITLE    3 6 STRUCTURES                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG);            
COMPND   3 CHAIN: A;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 OTHER_DETAILS: D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12- 
COMPND   6 T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2  
COMPND   7 ATOM OF DG6;                                                         
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG);            
COMPND  10 CHAIN: B;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 OTHER_DETAILS: D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12- 
COMPND  13 T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2  
COMPND  14 ATOM OF DG6                                                          
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 MOL_ID: 2;                                                           
SOURCE   4 SYNTHETIC: YES                                                       
KEYWDS    DEOXYRIBONUCLEIC ACID, DNA, BENZO[A]PYRENE, CARCINOGEN                
EXPDTA    SOLUTION NMR                                                          
NUMMDL    6                                                                     
AUTHOR    B.FENG,A.A.GORIN,A.KOLBANOVSKIY,B.E.HINGERTY,N.E.GEACINTOV,S.BROYDE,  
AUTHOR   2 D.J.PATEL                                                            
REVDAT   4   22-MAY-24 1AXL    1       REMARK                                   
REVDAT   3   16-FEB-22 1AXL    1       REMARK LINK                              
REVDAT   2   24-FEB-09 1AXL    1       VERSN                                    
REVDAT   1   01-JUL-98 1AXL    0                                                
JRNL        AUTH   B.FENG,A.GORIN,A.KOLBANOVSKIY,B.E.HINGERTY,N.E.GEACINTOV,    
JRNL        AUTH 2 S.BROYDE,D.J.PATEL                                           
JRNL        TITL   SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT    
JRNL        TITL 2 OPPOSITE A DELETION SITE IN A DNA DUPLEX: INTERCALATION OF   
JRNL        TITL 3 THE COVALENTLY ATTACHED BENZO[A]PYRENE INTO THE HELIX WITH   
JRNL        TITL 4 BASE DISPLACEMENT OF THE MODIFIED DEOXYGUANOSINE INTO THE    
JRNL        TITL 5 MINOR GROOVE.                                                
JRNL        REF    BIOCHEMISTRY                  V.  36 13780 1997              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   9374854                                                      
JRNL        DOI    10.1021/BI970070R                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.1                                           
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE    
REMARK   3  JRNL CITATION ABOVE.                                                
REMARK   4                                                                      
REMARK   4 1AXL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.                                
REMARK 100 THE DEPOSITION ID IS D_1000171379.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 317                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : NULL                               
REMARK 210  SAMPLE CONTENTS                : NULL                               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : NOESY; COSY; TOCSY; DQF-COSY       
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : VARIAN UNITY PLUS                  
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR, DUPLEX, X-PLOR               
REMARK 210   METHOD USED                   : MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 6                                  
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 6                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : ALL CONFORMERS WERE INCLUDED       
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   N2    DG A     6     C6   BAP A    22              2.16            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  1  DT A   4   P      DT A   4   O5'     0.063                       
REMARK 500  1  DT A   4   C5'    DT A   4   C4'     0.065                       
REMARK 500  1  DT A   4   C5     DT A   4   C7      0.043                       
REMARK 500  1  DT A   8   C5     DT A   8   C7      0.041                       
REMARK 500  1  DT B  14   C5     DT B  14   C7      0.037                       
REMARK 500  1  DA B  18   C5'    DA B  18   C4'     0.053                       
REMARK 500  1  DT B  19   C5     DT B  19   C7      0.039                       
REMARK 500  2  DT A   4   C5     DT A   4   C7      0.037                       
REMARK 500  2  DT A   8   C5     DT A   8   C7      0.041                       
REMARK 500  2  DA B  18   C5'    DA B  18   C4'     0.047                       
REMARK 500  2  DT B  19   C5     DT B  19   C7      0.037                       
REMARK 500  3  DT A   4   C5'    DT A   4   C4'     0.053                       
REMARK 500  3  DT A   4   C5     DT A   4   C7      0.042                       
REMARK 500  3  DT A   8   C5     DT A   8   C7      0.038                       
REMARK 500  3  DT B  14   C5     DT B  14   C7      0.047                       
REMARK 500  3  DT B  19   C5     DT B  19   C7      0.038                       
REMARK 500  4  DT A   4   C5     DT A   4   C7      0.043                       
REMARK 500  4  DT A   8   C5     DT A   8   C7      0.039                       
REMARK 500  4  DA A   9   C5'    DA A   9   C4'     0.047                       
REMARK 500  4  DT B  14   C5     DT B  14   C7      0.051                       
REMARK 500  5  DT A   4   C5     DT A   4   C7      0.049                       
REMARK 500  5  DT A   8   C5     DT A   8   C7      0.040                       
REMARK 500  5  DT B  14   C5     DT B  14   C7      0.047                       
REMARK 500  5  DT B  19   C5     DT B  19   C7      0.039                       
REMARK 500  6  DT B  14   C5     DT B  14   C7      0.053                       
REMARK 500  6  DT B  19   C5     DT B  19   C7      0.041                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1  DC A   2   C3' -  C2' -  C1' ANGL. DEV. =  -5.9 DEGREES          
REMARK 500  1  DA A   3   N1  -  C6  -  N6  ANGL. DEV. =  -4.1 DEGREES          
REMARK 500  1  DT A   4   C5' -  C4' -  C3' ANGL. DEV. =   7.9 DEGREES          
REMARK 500  1  DT A   4   C3' -  C2' -  C1' ANGL. DEV. =  -4.8 DEGREES          
REMARK 500  1  DT A   4   O4' -  C1' -  N1  ANGL. DEV. =   2.6 DEGREES          
REMARK 500  1  DC A   5   N1  -  C1' -  C2' ANGL. DEV. =   9.4 DEGREES          
REMARK 500  1  DC A   5   N1  -  C2  -  O2  ANGL. DEV. =   4.2 DEGREES          
REMARK 500  1  DC A   7   O4' -  C4' -  C3' ANGL. DEV. =  -7.4 DEGREES          
REMARK 500  1  DC A   7   C4' -  C3' -  C2' ANGL. DEV. =   6.1 DEGREES          
REMARK 500  1  DC A   7   C3' -  C2' -  C1' ANGL. DEV. =  -8.8 DEGREES          
REMARK 500  1  DC A   7   O4' -  C1' -  N1  ANGL. DEV. =   8.8 DEGREES          
REMARK 500  1  DC A   7   N1  -  C2  -  O2  ANGL. DEV. =   4.2 DEGREES          
REMARK 500  1  DT A   8   O4' -  C1' -  C2' ANGL. DEV. =  -5.0 DEGREES          
REMARK 500  1  DT A   8   O4' -  C1' -  N1  ANGL. DEV. =   3.1 DEGREES          
REMARK 500  1  DC A  11   C4' -  C3' -  C2' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500  1  DC A  11   O4' -  C1' -  N1  ANGL. DEV. =   6.3 DEGREES          
REMARK 500  1  DG B  13   O4' -  C1' -  C2' ANGL. DEV. =  -6.5 DEGREES          
REMARK 500  1  DG B  13   O4' -  C1' -  N9  ANGL. DEV. =   2.1 DEGREES          
REMARK 500  1  DA B  15   O4' -  C1' -  N9  ANGL. DEV. = -10.5 DEGREES          
REMARK 500  1  DG B  16   O4' -  C4' -  C3' ANGL. DEV. =  -6.4 DEGREES          
REMARK 500  1  DG B  16   C4' -  C3' -  O3' ANGL. DEV. =  12.5 DEGREES          
REMARK 500  1  DG B  16   O4' -  C1' -  N9  ANGL. DEV. =   3.0 DEGREES          
REMARK 500  1  DG B  16   C3' -  O3' -  P   ANGL. DEV. =   7.4 DEGREES          
REMARK 500  1  DG B  17   O4' -  C1' -  N9  ANGL. DEV. =   8.1 DEGREES          
REMARK 500  1  DA B  18   C5' -  C4' -  C3' ANGL. DEV. =   7.7 DEGREES          
REMARK 500  1  DA B  18   C4' -  C3' -  C2' ANGL. DEV. =  -4.3 DEGREES          
REMARK 500  1  DA B  18   C3' -  C2' -  C1' ANGL. DEV. =  -4.8 DEGREES          
REMARK 500  1  DT B  19   C3' -  C2' -  C1' ANGL. DEV. =  -8.1 DEGREES          
REMARK 500  1  DT B  19   O4' -  C1' -  N1  ANGL. DEV. =  -7.5 DEGREES          
REMARK 500  1  DT B  19   N3  -  C4  -  O4  ANGL. DEV. =  -3.9 DEGREES          
REMARK 500  1  DT B  19   C5  -  C4  -  O4  ANGL. DEV. =   5.9 DEGREES          
REMARK 500  1  DG B  20   C4' -  C3' -  C2' ANGL. DEV. =  -5.3 DEGREES          
REMARK 500  1  DG B  21   O4' -  C1' -  N9  ANGL. DEV. =  -5.8 DEGREES          
REMARK 500  2  DC A   2   C3' -  C2' -  C1' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500  2  DC A   2   O4' -  C1' -  N1  ANGL. DEV. =  -5.7 DEGREES          
REMARK 500  2  DA A   3   O4' -  C1' -  N9  ANGL. DEV. =   3.2 DEGREES          
REMARK 500  2  DA A   3   C6  -  N1  -  C2  ANGL. DEV. =   3.8 DEGREES          
REMARK 500  2  DT A   4   C3' -  C2' -  C1' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500  2  DC A   5   O4' -  C1' -  C2' ANGL. DEV. =  -5.4 DEGREES          
REMARK 500  2  DC A   5   N1  -  C1' -  C2' ANGL. DEV. =   9.6 DEGREES          
REMARK 500  2  DC A   5   O4' -  C1' -  N1  ANGL. DEV. =   3.5 DEGREES          
REMARK 500  2  DC A   7   O4' -  C4' -  C3' ANGL. DEV. =  -3.4 DEGREES          
REMARK 500  2  DC A   7   C3' -  C2' -  C1' ANGL. DEV. =  -6.2 DEGREES          
REMARK 500  2  DC A   7   O4' -  C1' -  C2' ANGL. DEV. =   3.1 DEGREES          
REMARK 500  2  DC A   7   O4' -  C1' -  N1  ANGL. DEV. =   6.7 DEGREES          
REMARK 500  2  DT A   8   O4' -  C1' -  N1  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  2  DT A   8   C6  -  C5  -  C7  ANGL. DEV. =  -3.8 DEGREES          
REMARK 500  2  DG B  13   O4' -  C1' -  N9  ANGL. DEV. =   2.2 DEGREES          
REMARK 500  2  DA B  15   C3' -  O3' -  P   ANGL. DEV. =  11.9 DEGREES          
REMARK 500  2  DG B  16   O4' -  C1' -  C2' ANGL. DEV. =  -7.2 DEGREES          
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     145 ANGLE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BAP A 22                  
DBREF  1AXL A    1    11  PDB    1AXL     1AXL             1     11             
DBREF  1AXL B   12    21  PDB    1AXL     1AXL            12     21             
SEQRES   1 A   11   DC  DC  DA  DT  DC  DG  DC  DT  DA  DC  DC                  
SEQRES   1 B   10   DG  DG  DT  DA  DG  DG  DA  DT  DG  DG                      
HET    BAP  A  22      38                                                       
HETNAM     BAP 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE                
FORMUL   3  BAP    C20 H16 O3                                                   
LINK         N2   DG A   6                 C4' BAP A  22     1555   1555  1.48  
SITE     1 AC1  5  DC A   5   DG A   6   DC A   7   DG B  16                    
SITE     2 AC1  5  DG B  17                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1