HEADER KINASE (TRANSPHOSPHORYLATING) 07-DEC-95 1AYL TITLE PHOSPHOENOLPYRUVATE CARBOXYKINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-OXALOACETATE CARBOXY-LYASE (ATP); COMPND 5 EC: 4.1.1.49; COMPND 6 OTHER_DETAILS: ORDERED MAGNESIUM ION OBSERVED BOUND TO ATP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS P-LOOP, PROTEIN-ATP COMPLEX, NUCLEOTIDE-TRIPHOSPHATE HYDROLASE, KEYWDS 2 KINASE (TRANSPHOSPHORYLATING) EXPDTA X-RAY DIFFRACTION AUTHOR L.W.TARI,U.PUGAZENTHI,H.GOLDIE,L.T.J.DELBAERE REVDAT 6 07-FEB-24 1AYL 1 REMARK LINK REVDAT 5 21-MAR-18 1AYL 1 REMARK REVDAT 4 29-NOV-17 1AYL 1 HELIX REVDAT 3 13-JUL-11 1AYL 1 VERSN REVDAT 2 24-FEB-09 1AYL 1 VERSN REVDAT 1 11-JAN-97 1AYL 0 JRNL AUTH L.W.TARI,A.MATTE,U.PUGAZHENTHI,H.GOLDIE,L.T.DELBAERE JRNL TITL SNAPSHOT OF AN ENZYME REACTION INTERMEDIATE IN THE STRUCTURE JRNL TITL 2 OF THE ATP-MG2+-OXALATE TERNARY COMPLEX OF ESCHERICHIA COLI JRNL TITL 3 PEP CARBOXYKINASE. JRNL REF NAT.STRUCT.BIOL. V. 3 355 1996 JRNL REFN ISSN 1072-8368 JRNL PMID 8599762 JRNL DOI 10.1038/NSB0496-355 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.GOLDIE,B.D.SANWAL REMARK 1 TITL ALLOSTERIC CONTROL BY CALCIUM AND MECHANISM OF REMARK 1 TITL 2 DESENSITIZATION OF PHOSPHOENOLPYRUVATE CARBOXYKINASE OF REMARK 1 TITL 3 ESCHERICHIA COLI REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH A.MATTE,H.GOLDIE,R.M.SWEET,L.T.DELBAERE REMARK 1 TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYKINASE: A NEW STRUCTURAL FAMILY WITH THE P-LOOP REMARK 1 TITL 3 NUCLEOSIDE TRIPHOSPHATE HYDROLASE FOLD REMARK 1 REF J.MOL.BIOL. V. 256 126 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.T.DELBAERE,M.VANDONSELAAR,D.GLAESKE,C.JABS,H.GOLDIE REMARK 1 TITL CRYSTALLIZATION OF THE CALCIUM-ACTIVATED PHOSPHOENOLPYRUVATE REMARK 1 TITL 2 CARBOXYKINASE FROM ESCHERICHIA COLI K12 REMARK 1 REF J.MOL.BIOL. V. 219 593 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH V.MEDINA,R.PONTAROLLO,D.GLAESKE,H.TABEL,H.GOLDIE REMARK 1 TITL SEQUENCE OF THE PCKA GENE OF ESCHERICHIA COLI K-12: REMARK 1 TITL 2 RELEVANCE TO GENETIC AND ALLOSTERIC REGULATION AND HOMOLOGY REMARK 1 TITL 3 OF E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE WITH THE REMARK 1 TITL 4 ENZYMES FROM TRYPANOSOMA BRUCEI AND SACCHAROMYCES CEREVISIAE REMARK 1 REF J.BACTERIOL. V. 172 7151 1990 REMARK 1 REFN ISSN 0021-9193 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.230 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MET 477 HAS DISALLOWED RAMACHANDRAN ANGLES; THE DEPOSITORS REMARK 3 ACCOUNT FOR THIS AS IT IS THE SECOND RESIDUE WITHIN A REMARK 3 GAMMA-TURN. REMARK 4 REMARK 4 1AYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : WEIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40067 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.75500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.75500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.34500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 393 REMARK 465 THR A 394 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 GLY A 397 REMARK 465 ILE A 398 REMARK 465 THR A 399 REMARK 465 GLU A 400 REMARK 465 SER A 541 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 3 CG1 CG2 REMARK 470 ASN A 4 CG OD1 ND2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 LYS A 492 CB CG CD CE NZ REMARK 470 LYS A 539 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 70 H2 HOH A 678 1.11 REMARK 500 HH11 ARG A 316 HG1 THR A 320 1.18 REMARK 500 HH TYR A 500 HZ2 LYS A 509 1.18 REMARK 500 HZ2 LYS A 116 H1 HOH A 623 1.22 REMARK 500 H ILE A 321 H2 HOH A 835 1.22 REMARK 500 H SER A 18 HG SER A 114 1.22 REMARK 500 HG SER A 335 H1 HOH A 700 1.26 REMARK 500 H ASP A 468 H2 HOH A 870 1.28 REMARK 500 H THR A 375 HE22 GLN A 378 1.29 REMARK 500 HG1 THR A 101 H1 HOH A 882 1.29 REMARK 500 HE1 TRP A 273 HD1 HIS A 353 1.30 REMARK 500 HZ1 LYS A 288 H2 HOH A 863 1.31 REMARK 500 H2 HOH A 745 H2 HOH A 820 1.32 REMARK 500 H LYS A 288 H2 HOH A 551 1.33 REMARK 500 HG SER A 134 H2 HOH A 758 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H ASP A 460 H2 HOH A 632 4556 0.75 REMARK 500 HE ARG A 428 H1 HOH A 687 4546 0.83 REMARK 500 HH21 ARG A 428 H2 HOH A 687 4546 0.84 REMARK 500 N ASP A 460 H2 HOH A 632 4556 0.87 REMARK 500 HH22 ARG A 316 O HOH A 674 4555 0.89 REMARK 500 H2 MET A 1 H2 MET A 1 2656 0.99 REMARK 500 NH2 ARG A 428 H2 HOH A 687 4546 1.02 REMARK 500 HH22 ARG A 316 H1 HOH A 674 4555 1.06 REMARK 500 HH11 ARG A 497 H2 HOH A 699 4555 1.07 REMARK 500 HH21 ARG A 428 O HOH A 687 4546 1.16 REMARK 500 CB ALA A 501 H2 HOH A 598 4555 1.17 REMARK 500 N ILE A 459 O HOH A 632 4556 1.18 REMARK 500 H ILE A 459 H1 HOH A 632 4556 1.23 REMARK 500 OD1 ASN A 440 H2 HOH A 634 4556 1.23 REMARK 500 HD22 ASN A 498 H1 HOH A 715 3455 1.26 REMARK 500 CA ILE A 459 O HOH A 632 4556 1.28 REMARK 500 N ILE A 459 H1 HOH A 632 4556 1.29 REMARK 500 H2 HOH A 650 H1 HOH A 793 4546 1.33 REMARK 500 H MET A 477 H1 HOH A 795 2555 1.34 REMARK 500 HE ARG A 428 O HOH A 687 4546 1.34 REMARK 500 C ILE A 459 H2 HOH A 632 4556 1.37 REMARK 500 CZ ARG A 428 H2 HOH A 687 4546 1.41 REMARK 500 H ASP A 460 O HOH A 632 4556 1.41 REMARK 500 CB ALA A 389 H1 HOH A 763 4555 1.47 REMARK 500 CG ASN A 440 H2 HOH A 634 4556 1.51 REMARK 500 CB ALA A 389 H2 HOH A 763 4555 1.53 REMARK 500 HD21 ASN A 440 O HOH A 634 4556 1.59 REMARK 500 C ILE A 459 O HOH A 632 4556 1.65 REMARK 500 N ASP A 460 O HOH A 632 4556 1.72 REMARK 500 NH2 ARG A 428 O HOH A 687 4546 1.77 REMARK 500 NH2 ARG A 316 O HOH A 674 4555 1.85 REMARK 500 CB ALA A 389 O HOH A 763 4555 1.87 REMARK 500 CB ALA A 501 O HOH A 598 4555 1.91 REMARK 500 NE ARG A 428 O HOH A 687 4546 1.91 REMARK 500 OD1 ASN A 440 O HOH A 634 4556 2.04 REMARK 500 CZ ARG A 428 O HOH A 687 4546 2.08 REMARK 500 O GLY A 227 O HOH A 687 4546 2.08 REMARK 500 C ILE A 458 O HOH A 632 4556 2.12 REMARK 500 ND2 ASN A 440 O HOH A 634 4556 2.13 REMARK 500 CB ILE A 459 O HOH A 632 4556 2.15 REMARK 500 O HOH A 566 O HOH A 691 4546 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 285 CB CYS A 285 SG -0.378 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 2 -152.21 47.20 REMARK 500 VAL A 3 -140.23 -102.95 REMARK 500 ASN A 5 -13.53 -172.51 REMARK 500 LYS A 87 -39.07 -133.90 REMARK 500 ASP A 269 -35.41 -152.47 REMARK 500 ASP A 274 -163.57 -113.09 REMARK 500 ASP A 307 -16.89 98.86 REMARK 500 ASN A 331 47.71 -82.14 REMARK 500 LYS A 390 -169.66 50.88 REMARK 500 MET A 477 -60.39 75.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 543 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 255 OG1 REMARK 620 2 ATP A 544 O2B 88.3 REMARK 620 3 ATP A 544 O3G 176.0 89.4 REMARK 620 4 HOH A 702 O 89.7 87.9 93.5 REMARK 620 5 HOH A 822 O 90.5 175.8 92.0 88.1 REMARK 620 6 HOH A 875 O 92.7 90.5 84.1 177.1 93.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: PUTATIVE ACTIVE SITE RESIDUES. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL A 542 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 544 DBREF 1AYL A 1 540 UNP P22259 PPCK_ECOLI 1 540 SEQRES 1 A 541 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 A 541 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 A 541 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 A 541 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 A 541 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 A 541 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 A 541 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 A 541 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 A 541 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 A 541 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 A 541 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 A 541 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 A 541 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 A 541 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 A 541 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 A 541 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP TYR GLY SEQRES 17 A 541 GLY GLU MET LYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 A 541 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 A 541 ALA ASN VAL GLY GLU LYS GLY ASP VAL ALA VAL PHE PHE SEQRES 20 A 541 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 A 541 PRO LYS ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 A 541 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY CYS TYR SEQRES 23 A 541 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 A 541 ILE TYR ASN ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 A 541 VAL THR VAL ARG GLU ASP GLY THR ILE ASP PHE ASP ASP SEQRES 26 A 541 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 A 541 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 A 541 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 A 541 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 A 541 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 A 541 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 A 541 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 A 541 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 A 541 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 A 541 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 A 541 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 A 541 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 A 541 ILE PRO THR GLU LEU PRO GLY VAL ASP THR LYS ILE LEU SEQRES 39 A 541 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 A 541 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 A 541 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 A 541 VAL ALA ALA GLY PRO LYS LEU SER HET OXL A 542 6 HET MG A 543 1 HET ATP A 544 34 HETNAM OXL OXALATE ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 OXL C2 O4 2- FORMUL 3 MG MG 2+ FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 HOH *345(H2 O) HELIX 1 A PRO A 9 GLY A 16 1 8 HELIX 2 B TYR A 29 GLU A 36 1 8 HELIX 3 C PRO A 99 LEU A 113 1 15 HELIX 4 D ALA A 142 MET A 151 1 10 HELIX 5 E GLY A 209 LEU A 225 1 17 HELIX 6 F GLY A 253 SER A 258 1 6 HELIX 7 G PRO A 298 ALA A 303 1 6 HELIX 8 H ALA A 376 SER A 385 1 10 HELIX 9 I PRO A 418 ALA A 432 1 15 HELIX 10 J SER A 451 LEU A 463 1 13 HELIX 11 K THR A 491 LEU A 494 5 4 HELIX 12 L PRO A 503 TYR A 524 1 22 HELIX 13 M PRO A 528 LEU A 533 1 6 HELIX 14 N VAL A 534 ALA A 536 5 3 SHEET 1 A 8 ASP A 22 TYR A 25 0 SHEET 2 A 8 ARG A 117 CYS A 125 1 SHEET 3 A 8 LEU A 133 THR A 139 -1 SHEET 4 A 8 PHE A 167 GLY A 172 1 SHEET 5 A 8 MET A 199 GLY A 203 1 SHEET 6 A 8 PHE A 190 ASN A 194 -1 SHEET 7 A 8 LYS A 70 VAL A 73 1 SHEET 8 A 8 LYS A 95 LEU A 97 1 SHEET 1 B 5 GLY A 47 LEU A 49 0 SHEET 2 B 5 VAL A 55 VAL A 57 -1 SHEET 3 B 5 LEU A 309 GLU A 311 1 SHEET 4 B 5 ARG A 333 TYR A 336 -1 SHEET 5 B 5 GLY A 284 LYS A 288 -1 SHEET 1 C 4 SER A 349 GLY A 352 0 SHEET 2 C 4 GLY A 277 ASN A 280 -1 SHEET 3 C 4 GLU A 270 ASP A 274 -1 SHEET 4 C 4 ALA A 229 HIS A 232 -1 SHEET 1 D 6 ARG A 264 GLY A 267 0 SHEET 2 D 6 SER A 234 VAL A 237 -1 SHEET 3 D 6 VAL A 243 PHE A 247 -1 SHEET 4 D 6 THR A 355 THR A 361 1 SHEET 5 D 6 GLN A 435 ASN A 440 1 SHEET 6 D 6 VAL A 371 ARG A 373 -1 LINK OG1 THR A 255 MG MG A 543 1555 1555 2.13 LINK MG MG A 543 O2B ATP A 544 1555 1555 2.22 LINK MG MG A 543 O3G ATP A 544 1555 1555 2.09 LINK MG MG A 543 O HOH A 702 1555 1555 2.19 LINK MG MG A 543 O HOH A 822 1555 1555 2.27 LINK MG MG A 543 O HOH A 875 1555 1555 2.29 CISPEP 1 LYS A 346 PRO A 347 0 0.82 SITE 1 ACT 17 ARG A 65 TYR A 207 LYS A 212 LYS A 213 SITE 2 ACT 17 HIS A 232 SER A 250 LYS A 254 THR A 255 SITE 3 ACT 17 ASP A 268 ASP A 269 LYS A 288 GLU A 297 SITE 4 ACT 17 ARG A 333 ARG A 449 ILE A 450 ILE A 452 SITE 5 ACT 17 THR A 455 SITE 1 AC1 7 ARG A 65 TYR A 207 LYS A 212 LYS A 213 SITE 2 AC1 7 ARG A 333 HOH A 805 HOH A 817 SITE 1 AC2 5 THR A 255 ATP A 544 HOH A 702 HOH A 822 SITE 2 AC2 5 HOH A 875 SITE 1 AC3 23 LEU A 249 SER A 250 GLY A 251 THR A 252 SITE 2 AC3 23 GLY A 253 LYS A 254 THR A 255 THR A 256 SITE 3 AC3 23 LYS A 288 ILE A 290 GLU A 297 ARG A 333 SITE 4 AC3 23 ARG A 449 ILE A 450 SER A 451 ILE A 452 SITE 5 AC3 23 THR A 455 MG A 543 HOH A 551 HOH A 560 SITE 6 AC3 23 HOH A 702 HOH A 823 HOH A 875 CRYST1 127.510 96.690 46.960 90.00 96.63 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007843 0.000000 0.000912 0.00000 SCALE2 0.000000 0.010342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021438 0.00000