data_1B03 # _entry.id 1B03 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1B03 pdb_00001b03 10.2210/pdb1b03/pdb RCSB RCSB000097 ? ? WWPDB D_1000000097 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-11-25 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly 2 4 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' struct_conf 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1B03 _pdbx_database_status.recvd_initial_deposition_date 1998-11-17 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tugarinov, V.' 1 'Zvi, A.' 2 'Levy, R.' 3 'Anglister, J.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A cis proline turn linking two beta-hairpin strands in the solution structure of an antibody-bound HIV-1IIIB V3 peptide.' Nat.Struct.Biol. 6 331 335 1999 NSBIEW US 1072-8368 2024 ? 10201400 10.1038/7567 1 ;Conformation of the Principal Neutralizing Determinant of Human Immunodeficiency Virus Type 1 in Complex with an Anti-GP120 Virus Neutralizing Antibody Studied by Two-dimensional Nuclear Magnetic Resonance Difference Spectroscopy. ; Biochemistry 36 8619 8627 1997 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tugarinov, V.' 1 ? primary 'Zvi, A.' 2 ? primary 'Levy, R.' 3 ? primary 'Anglister, J.' 4 ? 1 'Zvi, A.' 5 ? 1 'Feigelson, D.J.' 6 ? 1 'Hayek, Y.' 7 ? 1 'Anglister, J.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'PROTEIN (P1053 PEPTIDE)' _entity.formula_weight 2017.406 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'P1053 PEPTIDE REPRESENTS THE FULL ANTIBODY RECOGNIZED EPITOPE OF THE HIV-1IIIB GP120 V3 LOOP.' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RKSIRIQRGPGRAFVTIG _entity_poly.pdbx_seq_one_letter_code_can RKSIRIQRGPGRAFVTIG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 LYS n 1 3 SER n 1 4 ILE n 1 5 ARG n 1 6 ILE n 1 7 GLN n 1 8 ARG n 1 9 GLY n 1 10 PRO n 1 11 GLY n 1 12 ARG n 1 13 ALA n 1 14 PHE n 1 15 VAL n 1 16 THR n 1 17 ILE n 1 18 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 4 4 ARG ARG A . n A 1 2 LYS 2 5 5 LYS LYS A . n A 1 3 SER 3 6 6 SER SER A . n A 1 4 ILE 4 7 7 ILE ILE A . n A 1 5 ARG 5 8 8 ARG ARG A . n A 1 6 ILE 6 9 9 ILE ILE A . n A 1 7 GLN 7 10 10 GLN GLN A . n A 1 8 ARG 8 11 11 ARG ARG A . n A 1 9 GLY 9 12 12 GLY GLY A . n A 1 10 PRO 10 13 13 PRO PRO A . n A 1 11 GLY 11 14 14 GLY GLY A . n A 1 12 ARG 12 15 15 ARG ARG A . n A 1 13 ALA 13 16 16 ALA ALA A . n A 1 14 PHE 14 17 17 PHE PHE A . n A 1 15 VAL 15 18 18 VAL VAL A . n A 1 16 THR 16 19 19 THR THR A . n A 1 17 ILE 17 20 20 ILE ILE A . n A 1 18 GLY 18 21 21 GLY GLY A . n # _cell.entry_id 1B03 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B03 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1B03 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1B03 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1B03 _struct.title 'SOLUTION STRUCTURE OF THE ANTIBODY-BOUND HIV-1IIIB V3 PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1B03 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'P1053 STRUCTURE, Viral protein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q79428_9HIV1 _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession Q79428 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1B03 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 18 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q79428 _struct_ref_seq.db_align_beg 108 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 125 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 21 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 1 0.07 2 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 2 0.14 3 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 3 0.04 4 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 4 0.01 5 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 5 0.18 6 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 6 0.13 7 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 7 0.12 8 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 8 0.13 9 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 9 -0.15 10 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 10 -0.07 11 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 11 0.06 12 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 12 -0.05 13 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 13 -0.03 14 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 14 0.11 15 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 15 0.00 16 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 16 -0.11 17 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 17 -0.02 18 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 18 0.24 19 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 19 0.16 20 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 20 -0.02 21 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 21 0.13 22 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 22 0.17 23 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 23 0.00 24 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 24 0.02 25 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 25 0.03 26 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 26 0.08 27 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 27 0.35 28 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 28 0.24 29 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 29 -0.17 30 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 30 0.04 31 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 31 -0.07 32 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 32 -0.12 33 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 33 0.05 34 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 34 -0.02 35 GLY 9 A . ? GLY 12 A PRO 10 A ? PRO 13 A 35 0.31 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 2 ? ILE A 6 ? LYS A 5 ILE A 9 A 2 ALA A 13 ? ILE A 17 ? ALA A 16 ILE A 20 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 2 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 5 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 17 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 20 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 2 ALA A 16 ? ? -169.52 -166.47 2 4 ARG A 15 ? ? -62.28 88.22 3 5 ALA A 16 ? ? -170.28 -168.12 4 6 ALA A 16 ? ? -160.48 -165.16 5 8 ALA A 16 ? ? -160.96 -169.32 6 10 ALA A 16 ? ? -168.85 -166.63 7 14 ALA A 16 ? ? -170.42 -168.13 8 19 ALA A 16 ? ? -163.29 -168.86 9 21 ALA A 16 ? ? -170.22 -174.74 10 23 ALA A 16 ? ? -168.31 -164.61 11 35 ARG A 15 ? ? -61.58 98.84 # _pdbx_nmr_ensemble.entry_id 1B03 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 35 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATIONS' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 305 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 15N 1 2 1 '13C FILTERED NOESY' 1 # _pdbx_nmr_details.entry_id 1B03 _pdbx_nmr_details.text ;THE STRUCTURE WAS DETERMINED IN COMPLEX WITH THE FV ANTIBODY FRAGMENT USING ISOTOPE-FILTERED AND ISOTOPE-EDITED NMR WITH EITHER THE FV OR THE PEPTIDE LABELLED WITH 15N AND 13C. ; # _pdbx_nmr_refine.entry_id 1B03 _pdbx_nmr_refine.method 'HYBRID DG-SA' _pdbx_nmr_refine.details ;AFTER INITIAL SIMULATED ANNEALING CALCULATIONS THE STRUCTURES WERE MINIMIZED USING A FULL L-J POTENTIAL REPRESENTATION. THE CIS PEPTIDE BOND BETWEEN GLY 12 AND PRO 13 WAS PATHED CIS IN THE PROCESS OF STRUCTURE GENERATION. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' NMRPipe ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 GLN N N N N 41 GLN CA C N S 42 GLN C C N N 43 GLN O O N N 44 GLN CB C N N 45 GLN CG C N N 46 GLN CD C N N 47 GLN OE1 O N N 48 GLN NE2 N N N 49 GLN OXT O N N 50 GLN H H N N 51 GLN H2 H N N 52 GLN HA H N N 53 GLN HB2 H N N 54 GLN HB3 H N N 55 GLN HG2 H N N 56 GLN HG3 H N N 57 GLN HE21 H N N 58 GLN HE22 H N N 59 GLN HXT H N N 60 GLY N N N N 61 GLY CA C N N 62 GLY C C N N 63 GLY O O N N 64 GLY OXT O N N 65 GLY H H N N 66 GLY H2 H N N 67 GLY HA2 H N N 68 GLY HA3 H N N 69 GLY HXT H N N 70 ILE N N N N 71 ILE CA C N S 72 ILE C C N N 73 ILE O O N N 74 ILE CB C N S 75 ILE CG1 C N N 76 ILE CG2 C N N 77 ILE CD1 C N N 78 ILE OXT O N N 79 ILE H H N N 80 ILE H2 H N N 81 ILE HA H N N 82 ILE HB H N N 83 ILE HG12 H N N 84 ILE HG13 H N N 85 ILE HG21 H N N 86 ILE HG22 H N N 87 ILE HG23 H N N 88 ILE HD11 H N N 89 ILE HD12 H N N 90 ILE HD13 H N N 91 ILE HXT H N N 92 LYS N N N N 93 LYS CA C N S 94 LYS C C N N 95 LYS O O N N 96 LYS CB C N N 97 LYS CG C N N 98 LYS CD C N N 99 LYS CE C N N 100 LYS NZ N N N 101 LYS OXT O N N 102 LYS H H N N 103 LYS H2 H N N 104 LYS HA H N N 105 LYS HB2 H N N 106 LYS HB3 H N N 107 LYS HG2 H N N 108 LYS HG3 H N N 109 LYS HD2 H N N 110 LYS HD3 H N N 111 LYS HE2 H N N 112 LYS HE3 H N N 113 LYS HZ1 H N N 114 LYS HZ2 H N N 115 LYS HZ3 H N N 116 LYS HXT H N N 117 PHE N N N N 118 PHE CA C N S 119 PHE C C N N 120 PHE O O N N 121 PHE CB C N N 122 PHE CG C Y N 123 PHE CD1 C Y N 124 PHE CD2 C Y N 125 PHE CE1 C Y N 126 PHE CE2 C Y N 127 PHE CZ C Y N 128 PHE OXT O N N 129 PHE H H N N 130 PHE H2 H N N 131 PHE HA H N N 132 PHE HB2 H N N 133 PHE HB3 H N N 134 PHE HD1 H N N 135 PHE HD2 H N N 136 PHE HE1 H N N 137 PHE HE2 H N N 138 PHE HZ H N N 139 PHE HXT H N N 140 PRO N N N N 141 PRO CA C N S 142 PRO C C N N 143 PRO O O N N 144 PRO CB C N N 145 PRO CG C N N 146 PRO CD C N N 147 PRO OXT O N N 148 PRO H H N N 149 PRO HA H N N 150 PRO HB2 H N N 151 PRO HB3 H N N 152 PRO HG2 H N N 153 PRO HG3 H N N 154 PRO HD2 H N N 155 PRO HD3 H N N 156 PRO HXT H N N 157 SER N N N N 158 SER CA C N S 159 SER C C N N 160 SER O O N N 161 SER CB C N N 162 SER OG O N N 163 SER OXT O N N 164 SER H H N N 165 SER H2 H N N 166 SER HA H N N 167 SER HB2 H N N 168 SER HB3 H N N 169 SER HG H N N 170 SER HXT H N N 171 THR N N N N 172 THR CA C N S 173 THR C C N N 174 THR O O N N 175 THR CB C N R 176 THR OG1 O N N 177 THR CG2 C N N 178 THR OXT O N N 179 THR H H N N 180 THR H2 H N N 181 THR HA H N N 182 THR HB H N N 183 THR HG1 H N N 184 THR HG21 H N N 185 THR HG22 H N N 186 THR HG23 H N N 187 THR HXT H N N 188 VAL N N N N 189 VAL CA C N S 190 VAL C C N N 191 VAL O O N N 192 VAL CB C N N 193 VAL CG1 C N N 194 VAL CG2 C N N 195 VAL OXT O N N 196 VAL H H N N 197 VAL H2 H N N 198 VAL HA H N N 199 VAL HB H N N 200 VAL HG11 H N N 201 VAL HG12 H N N 202 VAL HG13 H N N 203 VAL HG21 H N N 204 VAL HG22 H N N 205 VAL HG23 H N N 206 VAL HXT H N N 207 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 GLN N CA sing N N 39 GLN N H sing N N 40 GLN N H2 sing N N 41 GLN CA C sing N N 42 GLN CA CB sing N N 43 GLN CA HA sing N N 44 GLN C O doub N N 45 GLN C OXT sing N N 46 GLN CB CG sing N N 47 GLN CB HB2 sing N N 48 GLN CB HB3 sing N N 49 GLN CG CD sing N N 50 GLN CG HG2 sing N N 51 GLN CG HG3 sing N N 52 GLN CD OE1 doub N N 53 GLN CD NE2 sing N N 54 GLN NE2 HE21 sing N N 55 GLN NE2 HE22 sing N N 56 GLN OXT HXT sing N N 57 GLY N CA sing N N 58 GLY N H sing N N 59 GLY N H2 sing N N 60 GLY CA C sing N N 61 GLY CA HA2 sing N N 62 GLY CA HA3 sing N N 63 GLY C O doub N N 64 GLY C OXT sing N N 65 GLY OXT HXT sing N N 66 ILE N CA sing N N 67 ILE N H sing N N 68 ILE N H2 sing N N 69 ILE CA C sing N N 70 ILE CA CB sing N N 71 ILE CA HA sing N N 72 ILE C O doub N N 73 ILE C OXT sing N N 74 ILE CB CG1 sing N N 75 ILE CB CG2 sing N N 76 ILE CB HB sing N N 77 ILE CG1 CD1 sing N N 78 ILE CG1 HG12 sing N N 79 ILE CG1 HG13 sing N N 80 ILE CG2 HG21 sing N N 81 ILE CG2 HG22 sing N N 82 ILE CG2 HG23 sing N N 83 ILE CD1 HD11 sing N N 84 ILE CD1 HD12 sing N N 85 ILE CD1 HD13 sing N N 86 ILE OXT HXT sing N N 87 LYS N CA sing N N 88 LYS N H sing N N 89 LYS N H2 sing N N 90 LYS CA C sing N N 91 LYS CA CB sing N N 92 LYS CA HA sing N N 93 LYS C O doub N N 94 LYS C OXT sing N N 95 LYS CB CG sing N N 96 LYS CB HB2 sing N N 97 LYS CB HB3 sing N N 98 LYS CG CD sing N N 99 LYS CG HG2 sing N N 100 LYS CG HG3 sing N N 101 LYS CD CE sing N N 102 LYS CD HD2 sing N N 103 LYS CD HD3 sing N N 104 LYS CE NZ sing N N 105 LYS CE HE2 sing N N 106 LYS CE HE3 sing N N 107 LYS NZ HZ1 sing N N 108 LYS NZ HZ2 sing N N 109 LYS NZ HZ3 sing N N 110 LYS OXT HXT sing N N 111 PHE N CA sing N N 112 PHE N H sing N N 113 PHE N H2 sing N N 114 PHE CA C sing N N 115 PHE CA CB sing N N 116 PHE CA HA sing N N 117 PHE C O doub N N 118 PHE C OXT sing N N 119 PHE CB CG sing N N 120 PHE CB HB2 sing N N 121 PHE CB HB3 sing N N 122 PHE CG CD1 doub Y N 123 PHE CG CD2 sing Y N 124 PHE CD1 CE1 sing Y N 125 PHE CD1 HD1 sing N N 126 PHE CD2 CE2 doub Y N 127 PHE CD2 HD2 sing N N 128 PHE CE1 CZ doub Y N 129 PHE CE1 HE1 sing N N 130 PHE CE2 CZ sing Y N 131 PHE CE2 HE2 sing N N 132 PHE CZ HZ sing N N 133 PHE OXT HXT sing N N 134 PRO N CA sing N N 135 PRO N CD sing N N 136 PRO N H sing N N 137 PRO CA C sing N N 138 PRO CA CB sing N N 139 PRO CA HA sing N N 140 PRO C O doub N N 141 PRO C OXT sing N N 142 PRO CB CG sing N N 143 PRO CB HB2 sing N N 144 PRO CB HB3 sing N N 145 PRO CG CD sing N N 146 PRO CG HG2 sing N N 147 PRO CG HG3 sing N N 148 PRO CD HD2 sing N N 149 PRO CD HD3 sing N N 150 PRO OXT HXT sing N N 151 SER N CA sing N N 152 SER N H sing N N 153 SER N H2 sing N N 154 SER CA C sing N N 155 SER CA CB sing N N 156 SER CA HA sing N N 157 SER C O doub N N 158 SER C OXT sing N N 159 SER CB OG sing N N 160 SER CB HB2 sing N N 161 SER CB HB3 sing N N 162 SER OG HG sing N N 163 SER OXT HXT sing N N 164 THR N CA sing N N 165 THR N H sing N N 166 THR N H2 sing N N 167 THR CA C sing N N 168 THR CA CB sing N N 169 THR CA HA sing N N 170 THR C O doub N N 171 THR C OXT sing N N 172 THR CB OG1 sing N N 173 THR CB CG2 sing N N 174 THR CB HB sing N N 175 THR OG1 HG1 sing N N 176 THR CG2 HG21 sing N N 177 THR CG2 HG22 sing N N 178 THR CG2 HG23 sing N N 179 THR OXT HXT sing N N 180 VAL N CA sing N N 181 VAL N H sing N N 182 VAL N H2 sing N N 183 VAL CA C sing N N 184 VAL CA CB sing N N 185 VAL CA HA sing N N 186 VAL C O doub N N 187 VAL C OXT sing N N 188 VAL CB CG1 sing N N 189 VAL CB CG2 sing N N 190 VAL CB HB sing N N 191 VAL CG1 HG11 sing N N 192 VAL CG1 HG12 sing N N 193 VAL CG1 HG13 sing N N 194 VAL CG2 HG21 sing N N 195 VAL CG2 HG22 sing N N 196 VAL CG2 HG23 sing N N 197 VAL OXT HXT sing N N 198 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1B03 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_