HEADER PEPTIDE BINDING PROTEIN 11-DEC-98 1B3L TITLE OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KGK COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN); COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: OPPA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (LYS-GLY-LYS); COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 GENE: OPPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES KEYWDS COMPLEX (PEPTIDE TRANSPORT-PEPTIDE), PEPTIDE TRANSPORT, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.H.TAME,A.J.WILKINSON REVDAT 7 16-OCT-24 1B3L 1 REMARK REVDAT 6 09-AUG-23 1B3L 1 REMARK REVDAT 5 24-FEB-09 1B3L 1 VERSN REVDAT 4 01-APR-03 1B3L 1 JRNL REVDAT 3 06-JAN-00 1B3L 1 JRNL REVDAT 2 29-DEC-99 1B3L 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 16-DEC-98 1B3L 0 JRNL AUTH S.H.SLEIGH,P.R.SEAVERS,A.J.WILKINSON,J.E.LADBURY,J.R.TAME JRNL TITL CRYSTALLOGRAPHIC AND CALORIMETRIC ANALYSIS OF PEPTIDE JRNL TITL 2 BINDING TO OPPA PROTEIN. JRNL REF J.MOL.BIOL. V. 291 393 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10438628 JRNL DOI 10.1006/JMBI.1999.2929 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.H.TAME,S.H.SLEIGH,A.J.WILKINSON,J.E.LADBURY REMARK 1 TITL THE ROLE OF WATER IN SEQUENCE-INDEPENDENT LIGAND BINDING BY REMARK 1 TITL 2 AN OLIGOPEPTIDE TRANSPORTER PROTEIN REMARK 1 REF NAT.STRUCT.BIOL. V. 3 998 1996 REMARK 1 REFN ISSN 1072-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.R.H.TAME,E.J.DODSON,G.MURSHUDOV,C.F.HIGGINS,A.J.WILKINSON REMARK 1 TITL THE CRYSTAL STRUCTURES OF THE OLIGOPEPTIDE-BINDING PROTEIN REMARK 1 TITL 2 OPPA COMPLEXED WITH TRIPEPTIDE AND TETRAPEPTIDE LIGANDS REMARK 1 REF STRUCTURE V. 3 1395 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 3 REMARK 1 AUTH I.D.GLOVER,R.DENNY,N.D.NGUTI,S.MCSWEENEY,A.THOMPSON, REMARK 1 AUTH 2 E.DODSON,A.J.WILKINSON,J.R.H.TAME REMARK 1 TITL STRUCTURE DETERMINATION OF OPPA AT 2.3 ANGSTROMS RESOLUTION REMARK 1 TITL 2 USING MULTIPLE WAVELENGTH ANOMALOUS METHODS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 51 39 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 4 REMARK 1 AUTH J.R.H.TAME,G.N.MURSHUDOV,E.J.DODSON,T.K.NEIL,G.G.DODSON, REMARK 1 AUTH 2 C.F.HIGGINS,A.J.WILKINSON REMARK 1 TITL THE STRUCTURAL BASIS OF SEQUENCE-INDEPENDENT PEPTIDE BINDING REMARK 1 TITL 2 BY OPPA PROTEIN REMARK 1 REF SCIENCE V. 264 1578 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 72216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2154 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8376 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 339 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.016 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.035 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.039 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.177 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.255 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.154 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.000 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 17.800; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 29.400; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.886 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.649 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.348 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.526 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40411 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1OLB REMARK 200 REMARK 200 REMARK: FLASH COOLED TO 120K REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CO-CRYSTALLIZED WITH URANIUM ACETATE, REMARK 280 PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 70 NZ REMARK 480 LYS A 192 CD CE NZ REMARK 480 LYS A 194 CE NZ REMARK 480 LYS A 339 CE NZ REMARK 480 GLU A 396 CD OE1 OE2 REMARK 480 LYS C 192 CE NZ REMARK 480 LYS C 326 CG CD CE NZ REMARK 480 LYS C 345 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 194 CD LYS A 194 CE -0.250 REMARK 500 LYS A 339 CD LYS A 339 CE 0.381 REMARK 500 GLU A 396 CG GLU A 396 CD 0.889 REMARK 500 LYS C 192 CD LYS C 192 CE 0.486 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 102 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 TYR A 109 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 TYR A 115 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR A 115 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLU A 145 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 LYS A 192 CB - CG - CD ANGL. DEV. = -15.8 DEGREES REMARK 500 LYS A 194 CG - CD - CE ANGL. DEV. = 32.1 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 235 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LYS A 255 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 286 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 290 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 LYS A 339 CD - CE - NZ ANGL. DEV. = -31.4 DEGREES REMARK 500 ASP A 362 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 GLU A 396 CB - CG - CD ANGL. DEV. = -47.0 DEGREES REMARK 500 ARG A 413 NH1 - CZ - NH2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 GLU A 422 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG C 77 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ASP C 84 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP C 102 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR C 115 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TYR C 115 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP C 140 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 LYS C 192 CG - CD - CE ANGL. DEV. = -19.0 DEGREES REMARK 500 ARG C 201 CD - NE - CZ ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG C 201 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP C 212 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 235 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 265 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG C 265 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR C 273 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 TYR C 273 CB - CG - CD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG C 290 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP C 298 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG C 299 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP C 311 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C 413 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG C 413 NH1 - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG C 413 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP C 433 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 GLN C 461 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG C 489 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG C 489 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 10 172.21 -59.78 REMARK 500 GLU A 32 -6.69 -144.53 REMARK 500 ASP A 51 -154.47 -70.96 REMARK 500 PRO A 58 127.40 -36.53 REMARK 500 PHE A 69 19.99 58.03 REMARK 500 GLU A 200 -59.40 -122.17 REMARK 500 ARG A 206 137.49 -38.45 REMARK 500 PRO A 225 52.85 -111.04 REMARK 500 TYR A 236 -61.35 -90.70 REMARK 500 SER A 238 29.80 -78.98 REMARK 500 LYS A 258 -7.28 -159.41 REMARK 500 ASN A 308 73.16 49.12 REMARK 500 ASP A 356 -14.92 74.89 REMARK 500 LYS A 357 62.01 -167.52 REMARK 500 THR A 367 129.36 -39.74 REMARK 500 THR A 408 50.07 -96.14 REMARK 500 ASP A 410 -67.13 -102.83 REMARK 500 TYR A 513 142.81 -170.65 REMARK 500 GLN C 13 74.84 -102.56 REMARK 500 GLU C 32 -0.84 -140.08 REMARK 500 GLU C 200 -56.04 -130.10 REMARK 500 ASN C 246 54.32 -98.13 REMARK 500 SER C 368 146.15 178.32 REMARK 500 THR C 408 57.85 -97.20 REMARK 500 ASP C 410 -66.17 -104.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IUM C 518 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM C 518 DBREF 1B3L A 1 517 UNP P06202 OPPA_SALTY 26 542 DBREF 1B3L C 1 517 UNP P06202 OPPA_SALTY 26 542 DBREF 1B3L B 1 3 PDB 1B3L 1B3L 1 3 DBREF 1B3L D 1 3 PDB 1B3L 1B3L 1 3 SEQRES 1 A 517 ALA ASP VAL PRO ALA GLY VAL GLN LEU ALA ASP LYS GLN SEQRES 2 A 517 THR LEU VAL ARG ASN ASN GLY SER GLU VAL GLN SER LEU SEQRES 3 A 517 ASP PRO HIS LYS ILE GLU GLY VAL PRO GLU SER ASN VAL SEQRES 4 A 517 SER ARG ASP LEU PHE GLU GLY LEU LEU ILE SER ASP VAL SEQRES 5 A 517 GLU GLY HIS PRO SER PRO GLY VAL ALA GLU LYS TRP GLU SEQRES 6 A 517 ASN LYS ASP PHE LYS VAL TRP THR PHE HIS LEU ARG GLU SEQRES 7 A 517 ASN ALA LYS TRP SER ASP GLY THR PRO VAL THR ALA HIS SEQRES 8 A 517 ASP PHE VAL TYR SER TRP GLN ARG LEU ALA ASP PRO ASN SEQRES 9 A 517 THR ALA SER PRO TYR ALA SER TYR LEU GLN TYR GLY HIS SEQRES 10 A 517 ILE ALA ASN ILE ASP ASP ILE ILE ALA GLY LYS LYS PRO SEQRES 11 A 517 ALA THR ASP LEU GLY VAL LYS ALA LEU ASP ASP HIS THR SEQRES 12 A 517 PHE GLU VAL THR LEU SER GLU PRO VAL PRO TYR PHE TYR SEQRES 13 A 517 LYS LEU LEU VAL HIS PRO SER VAL SER PRO VAL PRO LYS SEQRES 14 A 517 SER ALA VAL GLU LYS PHE GLY ASP LYS TRP THR GLN PRO SEQRES 15 A 517 ALA ASN ILE VAL THR ASN GLY ALA TYR LYS LEU LYS ASN SEQRES 16 A 517 TRP VAL VAL ASN GLU ARG ILE VAL LEU GLU ARG ASN PRO SEQRES 17 A 517 GLN TYR TRP ASP ASN ALA LYS THR VAL ILE ASN GLN VAL SEQRES 18 A 517 THR TYR LEU PRO ILE SER SER GLU VAL THR ASP VAL ASN SEQRES 19 A 517 ARG TYR ARG SER GLY GLU ILE ASP MET THR TYR ASN ASN SEQRES 20 A 517 MET PRO ILE GLU LEU PHE GLN LYS LEU LYS LYS GLU ILE SEQRES 21 A 517 PRO ASN GLU VAL ARG VAL ASP PRO TYR LEU CYS THR TYR SEQRES 22 A 517 TYR TYR GLU ILE ASN ASN GLN LYS ALA PRO PHE ASN ASP SEQRES 23 A 517 VAL ARG VAL ARG THR ALA LEU LYS LEU ALA LEU ASP ARG SEQRES 24 A 517 ASP ILE ILE VAL ASN LYS VAL LYS ASN GLN GLY ASP LEU SEQRES 25 A 517 PRO ALA TYR SER TYR THR PRO PRO TYR THR ASP GLY ALA SEQRES 26 A 517 LYS LEU VAL GLU PRO GLU TRP PHE LYS TRP SER GLN GLN SEQRES 27 A 517 LYS ARG ASN GLU GLU ALA LYS LYS LEU LEU ALA GLU ALA SEQRES 28 A 517 GLY PHE THR ALA ASP LYS PRO LEU THR PHE ASP LEU LEU SEQRES 29 A 517 TYR ASN THR SER ASP LEU HIS LYS LYS LEU ALA ILE ALA SEQRES 30 A 517 VAL ALA SER ILE TRP LYS LYS ASN LEU GLY VAL ASN VAL SEQRES 31 A 517 ASN LEU GLU ASN GLN GLU TRP LYS THR PHE LEU ASP THR SEQRES 32 A 517 ARG HIS GLN GLY THR PHE ASP VAL ALA ARG ALA GLY TRP SEQRES 33 A 517 CYS ALA ASP TYR ASN GLU PRO THR SER PHE LEU ASN THR SEQRES 34 A 517 MET LEU SER ASP SER SER ASN ASN THR ALA HIS TYR LYS SEQRES 35 A 517 SER PRO ALA PHE ASP LYS LEU ILE ALA ASP THR LEU LYS SEQRES 36 A 517 VAL ALA ASP ASP THR GLN ARG SER GLU LEU TYR ALA LYS SEQRES 37 A 517 ALA GLU GLN GLN LEU ASP LYS ASP SER ALA ILE VAL PRO SEQRES 38 A 517 VAL TYR TYR TYR VAL ASN ALA ARG LEU VAL LYS PRO TRP SEQRES 39 A 517 VAL GLY GLY TYR THR GLY LYS ASP PRO LEU ASP ASN ILE SEQRES 40 A 517 TYR VAL LYS ASN LEU TYR ILE ILE LYS HIS SEQRES 1 B 3 LYS GLY LYS SEQRES 1 C 517 ALA ASP VAL PRO ALA GLY VAL GLN LEU ALA ASP LYS GLN SEQRES 2 C 517 THR LEU VAL ARG ASN ASN GLY SER GLU VAL GLN SER LEU SEQRES 3 C 517 ASP PRO HIS LYS ILE GLU GLY VAL PRO GLU SER ASN VAL SEQRES 4 C 517 SER ARG ASP LEU PHE GLU GLY LEU LEU ILE SER ASP VAL SEQRES 5 C 517 GLU GLY HIS PRO SER PRO GLY VAL ALA GLU LYS TRP GLU SEQRES 6 C 517 ASN LYS ASP PHE LYS VAL TRP THR PHE HIS LEU ARG GLU SEQRES 7 C 517 ASN ALA LYS TRP SER ASP GLY THR PRO VAL THR ALA HIS SEQRES 8 C 517 ASP PHE VAL TYR SER TRP GLN ARG LEU ALA ASP PRO ASN SEQRES 9 C 517 THR ALA SER PRO TYR ALA SER TYR LEU GLN TYR GLY HIS SEQRES 10 C 517 ILE ALA ASN ILE ASP ASP ILE ILE ALA GLY LYS LYS PRO SEQRES 11 C 517 ALA THR ASP LEU GLY VAL LYS ALA LEU ASP ASP HIS THR SEQRES 12 C 517 PHE GLU VAL THR LEU SER GLU PRO VAL PRO TYR PHE TYR SEQRES 13 C 517 LYS LEU LEU VAL HIS PRO SER VAL SER PRO VAL PRO LYS SEQRES 14 C 517 SER ALA VAL GLU LYS PHE GLY ASP LYS TRP THR GLN PRO SEQRES 15 C 517 ALA ASN ILE VAL THR ASN GLY ALA TYR LYS LEU LYS ASN SEQRES 16 C 517 TRP VAL VAL ASN GLU ARG ILE VAL LEU GLU ARG ASN PRO SEQRES 17 C 517 GLN TYR TRP ASP ASN ALA LYS THR VAL ILE ASN GLN VAL SEQRES 18 C 517 THR TYR LEU PRO ILE SER SER GLU VAL THR ASP VAL ASN SEQRES 19 C 517 ARG TYR ARG SER GLY GLU ILE ASP MET THR TYR ASN ASN SEQRES 20 C 517 MET PRO ILE GLU LEU PHE GLN LYS LEU LYS LYS GLU ILE SEQRES 21 C 517 PRO ASN GLU VAL ARG VAL ASP PRO TYR LEU CYS THR TYR SEQRES 22 C 517 TYR TYR GLU ILE ASN ASN GLN LYS ALA PRO PHE ASN ASP SEQRES 23 C 517 VAL ARG VAL ARG THR ALA LEU LYS LEU ALA LEU ASP ARG SEQRES 24 C 517 ASP ILE ILE VAL ASN LYS VAL LYS ASN GLN GLY ASP LEU SEQRES 25 C 517 PRO ALA TYR SER TYR THR PRO PRO TYR THR ASP GLY ALA SEQRES 26 C 517 LYS LEU VAL GLU PRO GLU TRP PHE LYS TRP SER GLN GLN SEQRES 27 C 517 LYS ARG ASN GLU GLU ALA LYS LYS LEU LEU ALA GLU ALA SEQRES 28 C 517 GLY PHE THR ALA ASP LYS PRO LEU THR PHE ASP LEU LEU SEQRES 29 C 517 TYR ASN THR SER ASP LEU HIS LYS LYS LEU ALA ILE ALA SEQRES 30 C 517 VAL ALA SER ILE TRP LYS LYS ASN LEU GLY VAL ASN VAL SEQRES 31 C 517 ASN LEU GLU ASN GLN GLU TRP LYS THR PHE LEU ASP THR SEQRES 32 C 517 ARG HIS GLN GLY THR PHE ASP VAL ALA ARG ALA GLY TRP SEQRES 33 C 517 CYS ALA ASP TYR ASN GLU PRO THR SER PHE LEU ASN THR SEQRES 34 C 517 MET LEU SER ASP SER SER ASN ASN THR ALA HIS TYR LYS SEQRES 35 C 517 SER PRO ALA PHE ASP LYS LEU ILE ALA ASP THR LEU LYS SEQRES 36 C 517 VAL ALA ASP ASP THR GLN ARG SER GLU LEU TYR ALA LYS SEQRES 37 C 517 ALA GLU GLN GLN LEU ASP LYS ASP SER ALA ILE VAL PRO SEQRES 38 C 517 VAL TYR TYR TYR VAL ASN ALA ARG LEU VAL LYS PRO TRP SEQRES 39 C 517 VAL GLY GLY TYR THR GLY LYS ASP PRO LEU ASP ASN ILE SEQRES 40 C 517 TYR VAL LYS ASN LEU TYR ILE ILE LYS HIS SEQRES 1 D 3 LYS GLY LYS HET IUM C 518 1 HETNAM IUM URANYL (VI) ION FORMUL 5 IUM O2 U 2+ FORMUL 6 HOH *339(H2 O) HELIX 1 1 PRO A 28 LYS A 30 5 3 HELIX 2 2 VAL A 34 LEU A 43 1 10 HELIX 3 3 ALA A 90 ALA A 101 1 12 HELIX 4 4 PRO A 103 THR A 105 5 3 HELIX 5 5 ALA A 110 TYR A 115 5 6 HELIX 6 6 ILE A 121 ILE A 125 1 5 HELIX 7 7 ALA A 131 ASP A 133 5 3 HELIX 8 8 PHE A 155 VAL A 160 1 6 HELIX 9 9 PRO A 162 VAL A 164 5 3 HELIX 10 10 LYS A 169 THR A 180 1 12 HELIX 11 11 ASN A 213 LYS A 215 5 3 HELIX 12 12 GLU A 229 TYR A 236 1 8 HELIX 13 13 ILE A 250 GLU A 259 1 10 HELIX 14 14 VAL A 287 ALA A 296 1 10 HELIX 15 15 ARG A 299 ASN A 304 1 6 HELIX 16 16 GLU A 331 LYS A 334 1 4 HELIX 17 17 GLN A 337 GLU A 350 1 14 HELIX 18 18 ASP A 369 LEU A 386 1 18 HELIX 19 19 TRP A 397 GLN A 406 1 10 HELIX 20 20 PRO A 423 MET A 430 5 8 HELIX 21 21 PRO A 444 LEU A 454 1 11 HELIX 22 22 ASP A 459 ASP A 476 1 18 HELIX 23 23 VAL A 509 ASN A 511 5 3 HELIX 24 24 PRO C 28 LYS C 30 5 3 HELIX 25 25 VAL C 34 LEU C 43 1 10 HELIX 26 26 ALA C 90 ALA C 101 1 12 HELIX 27 27 PRO C 103 THR C 105 5 3 HELIX 28 28 ALA C 110 TYR C 115 5 6 HELIX 29 29 ILE C 121 ILE C 125 1 5 HELIX 30 30 ALA C 131 ASP C 133 5 3 HELIX 31 31 PHE C 155 VAL C 160 1 6 HELIX 32 32 PRO C 162 VAL C 164 5 3 HELIX 33 33 LYS C 169 THR C 180 1 12 HELIX 34 34 ASN C 213 LYS C 215 5 3 HELIX 35 35 GLU C 229 ARG C 237 1 9 HELIX 36 36 ILE C 250 GLU C 259 1 10 HELIX 37 37 VAL C 287 ALA C 296 1 10 HELIX 38 38 ARG C 299 ASN C 304 1 6 HELIX 39 39 GLU C 331 LYS C 334 1 4 HELIX 40 40 GLN C 337 GLU C 350 1 14 HELIX 41 41 ASP C 369 LEU C 386 1 18 HELIX 42 42 TRP C 397 GLN C 406 1 10 HELIX 43 43 PRO C 423 MET C 430 5 8 HELIX 44 44 PRO C 444 LEU C 454 1 11 HELIX 45 45 ASP C 459 LYS C 475 1 17 HELIX 46 46 VAL C 509 ASN C 511 5 3 SHEET 1 A 4 THR A 14 ASN A 18 0 SHEET 2 A 4 GLN A 220 LEU A 224 1 N GLN A 220 O LEU A 15 SHEET 3 A 4 ARG A 201 ARG A 206 -1 N LEU A 204 O VAL A 221 SHEET 4 A 4 TYR A 191 VAL A 197 -1 N VAL A 197 O ARG A 201 SHEET 1 B 2 LEU A 48 SER A 50 0 SHEET 2 B 2 PRO A 56 PRO A 58 -1 N SER A 57 O ILE A 49 SHEET 1 C 4 ALA A 61 LYS A 67 0 SHEET 2 C 4 VAL A 71 LEU A 76 -1 N HIS A 75 O GLU A 62 SHEET 3 C 4 THR A 143 THR A 147 -1 N VAL A 146 O TRP A 72 SHEET 4 C 4 VAL A 136 ASP A 140 -1 N ASP A 140 O THR A 143 SHEET 1 D 2 VAL A 264 PRO A 268 0 SHEET 2 D 2 VAL A 486 LEU A 490 -1 N ARG A 489 O ARG A 265 SHEET 1 E 3 VAL A 411 CYS A 417 0 SHEET 2 E 3 CYS A 271 ILE A 277 -1 N GLU A 276 O ALA A 412 SHEET 3 E 3 ILE A 479 TYR A 484 -1 N TYR A 483 O TYR A 273 SHEET 1 F 2 THR A 360 ASN A 366 0 SHEET 2 F 2 ASN A 389 GLN A 395 1 N ASN A 389 O PHE A 361 SHEET 1 G 4 THR C 14 ASN C 18 0 SHEET 2 G 4 GLN C 220 LEU C 224 1 N GLN C 220 O LEU C 15 SHEET 3 G 4 ARG C 201 ARG C 206 -1 N LEU C 204 O VAL C 221 SHEET 4 G 4 TYR C 191 VAL C 197 -1 N VAL C 197 O ARG C 201 SHEET 1 H 2 LEU C 48 SER C 50 0 SHEET 2 H 2 PRO C 56 PRO C 58 -1 N SER C 57 O ILE C 49 SHEET 1 I 4 ALA C 61 LYS C 67 0 SHEET 2 I 4 VAL C 71 LEU C 76 -1 N HIS C 75 O GLU C 62 SHEET 3 I 4 THR C 143 THR C 147 -1 N VAL C 146 O TRP C 72 SHEET 4 I 4 VAL C 136 ASP C 140 -1 N ASP C 140 O THR C 143 SHEET 1 J 2 VAL C 264 PRO C 268 0 SHEET 2 J 2 VAL C 486 LEU C 490 -1 N ARG C 489 O ARG C 265 SHEET 1 K 3 VAL C 411 CYS C 417 0 SHEET 2 K 3 CYS C 271 ILE C 277 -1 N GLU C 276 O ALA C 412 SHEET 3 K 3 ILE C 479 TYR C 484 -1 N TYR C 483 O TYR C 273 SHEET 1 L 2 THR C 360 ASN C 366 0 SHEET 2 L 2 ASN C 389 GLN C 395 1 N ASN C 389 O PHE C 361 SSBOND 1 CYS A 271 CYS A 417 1555 1555 2.02 SSBOND 2 CYS C 271 CYS C 417 1555 1555 2.04 CISPEP 1 ALA A 282 PRO A 283 0 -0.60 CISPEP 2 ALA C 282 PRO C 283 0 5.62 SITE 1 AC1 2 ASP C 362 ASP C 410 CRYST1 69.910 74.800 103.770 90.00 91.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014304 0.000000 0.000275 0.00000 SCALE2 0.000000 0.013369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009638 0.00000 MTRIX1 1 -0.995000 0.071000 0.072000 58.79204 1 MTRIX2 1 -0.079000 -0.989000 -0.128000 21.41094 1 MTRIX3 1 0.062000 -0.133000 0.989000 -53.27153 1