HEADER PHOSPHOTRANSFERASE 28-DEC-98 1B4S TITLE STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE H122G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NDPK; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, KINASE, ATP-BINDING, PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MEYER,J.JANIN REVDAT 5 22-MAY-24 1B4S 1 REMARK REVDAT 4 02-AUG-23 1B4S 1 REMARK REVDAT 3 03-NOV-21 1B4S 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1B4S 1 VERSN REVDAT 1 15-JUN-99 1B4S 0 JRNL AUTH S.J.ADMIRAAL,B.SCHNEIDER,P.MEYER,J.JANIN,M.VERON, JRNL AUTH 2 D.DEVILLE-BONNE,D.HERSCHLAG JRNL TITL NUCLEOPHILIC ACTIVATION BY POSITIONING IN PHOSPHORYL JRNL TITL 2 TRANSFER CATALYZED BY NUCLEOSIDE DIPHOSPHATE KINASE. JRNL REF BIOCHEMISTRY V. 38 4701 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10200157 JRNL DOI 10.1021/BI9827565 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.MORERA,M.CHIADMI,G.LEBRAS,I.LASCU,J.JANIN REMARK 1 TITL MECHANISM OF PHOSPHATE TRANSFER BY NUCLEOSIDE DIPHOSPHATE REMARK 1 TITL 2 KINASE: X-RAY STRUCTURES OF THE PHOSPHOHISTIDINE REMARK 1 TITL 3 INTERMEDIATE OF THE ENZYMES FROM DROSOPHILA AND REMARK 1 TITL 4 DICTYOSTELIUM REMARK 1 REF BIOCHEMISTRY V. 34 11062 1995 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.MORERA,I.LASCU,C.DUMAS,G.LEBRAS,P.BRIOZZO,M.VERON,J.JANIN REMARK 1 TITL ADENOSINE 5'-DIPHOSPHATE BINDING AND THE ACTIVE SITE OF REMARK 1 TITL 2 NUCLEOSIDE DIPHOSPHATE KINASE REMARK 1 REF BIOCHEMISTRY V. 33 459 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3423 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 2.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MUTANT HAS LOST NDPK ACTIVITY, BUT EFFICIENTLY REMARK 3 PHOSPHORYLATES IMIDAZOLE AND OTHER PHOSPHATE ACCEPTOR REMARK 3 MOLECULES (AMINES AND ALCOHOLS). THE PROTEIN WAS REMARK 3 CRYSTALLIZED WITH ATP, BUT THE NUCLEOTIDE IS SEEN TO BE REMARK 3 HYDROLYZED TO ADP+PO4 IN THE CRYSTAL. REMARK 4 REMARK 4 1B4S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : D41A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.375 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1KDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.59000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.18000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.18000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 105.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 60.62178 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.59000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 ASN C 4 REMARK 465 LYS C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 76 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 114 -35.36 -138.28 REMARK 500 ASN A 119 33.56 -92.20 REMARK 500 ILE A 120 -42.44 55.83 REMARK 500 LYS B 43 144.57 -172.33 REMARK 500 VAL B 114 -34.18 -140.43 REMARK 500 ASN B 119 37.60 -96.22 REMARK 500 ILE B 120 -47.28 53.93 REMARK 500 ASN C 7 57.23 -63.68 REMARK 500 TYR C 56 33.56 -99.17 REMARK 500 VAL C 114 -43.27 -137.83 REMARK 500 ARG C 118 59.45 -118.85 REMARK 500 ASN C 119 34.92 -94.99 REMARK 500 ILE C 120 -48.71 56.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 162 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 160 O1B REMARK 620 2 ADP A 160 O1A 65.0 REMARK 620 3 PO4 A 161 O1 80.2 78.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 162 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 160 O1B REMARK 620 2 ADP B 160 O1A 73.8 REMARK 620 3 PO4 B 161 O2 79.5 86.4 REMARK 620 4 HOH B 203 O 99.0 172.3 89.4 REMARK 620 5 HOH B 204 O 89.1 80.4 164.6 102.7 REMARK 620 6 HOH B 205 O 148.5 76.9 87.4 109.4 97.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 162 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP C 160 O1A REMARK 620 2 ADP C 160 O1B 73.3 REMARK 620 3 PO4 C 161 O1 92.5 79.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 160 DBREF 1B4S A 1 155 UNP P22887 NDKC_DICDI 1 155 DBREF 1B4S B 1 155 UNP P22887 NDKC_DICDI 1 155 DBREF 1B4S C 1 155 UNP P22887 NDKC_DICDI 1 155 SEQADV 1B4S GLY A 122 UNP P22887 HIS 122 ENGINEERED MUTATION SEQADV 1B4S GLY B 122 UNP P22887 HIS 122 ENGINEERED MUTATION SEQADV 1B4S GLY C 122 UNP P22887 HIS 122 ENGINEERED MUTATION SEQRES 1 A 155 MET SER THR ASN LYS VAL ASN LYS GLU ARG THR PHE LEU SEQRES 2 A 155 ALA VAL LYS PRO ASP GLY VAL ALA ARG GLY LEU VAL GLY SEQRES 3 A 155 GLU ILE ILE ALA ARG TYR GLU LYS LYS GLY PHE VAL LEU SEQRES 4 A 155 VAL GLY LEU LYS GLN LEU VAL PRO THR LYS ASP LEU ALA SEQRES 5 A 155 GLU SER HIS TYR ALA GLU HIS LYS GLU ARG PRO PHE PHE SEQRES 6 A 155 GLY GLY LEU VAL SER PHE ILE THR SER GLY PRO VAL VAL SEQRES 7 A 155 ALA MET VAL PHE GLU GLY LYS GLY VAL VAL ALA SER ALA SEQRES 8 A 155 ARG LEU MET ILE GLY VAL THR ASN PRO LEU ALA SER ALA SEQRES 9 A 155 PRO GLY SER ILE ARG GLY ASP PHE GLY VAL ASP VAL GLY SEQRES 10 A 155 ARG ASN ILE ILE GLY GLY SER ASP SER VAL GLU SER ALA SEQRES 11 A 155 ASN ARG GLU ILE ALA LEU TRP PHE LYS PRO GLU GLU LEU SEQRES 12 A 155 LEU THR GLU VAL LYS PRO ASN PRO ASN LEU TYR GLU SEQRES 1 B 155 MET SER THR ASN LYS VAL ASN LYS GLU ARG THR PHE LEU SEQRES 2 B 155 ALA VAL LYS PRO ASP GLY VAL ALA ARG GLY LEU VAL GLY SEQRES 3 B 155 GLU ILE ILE ALA ARG TYR GLU LYS LYS GLY PHE VAL LEU SEQRES 4 B 155 VAL GLY LEU LYS GLN LEU VAL PRO THR LYS ASP LEU ALA SEQRES 5 B 155 GLU SER HIS TYR ALA GLU HIS LYS GLU ARG PRO PHE PHE SEQRES 6 B 155 GLY GLY LEU VAL SER PHE ILE THR SER GLY PRO VAL VAL SEQRES 7 B 155 ALA MET VAL PHE GLU GLY LYS GLY VAL VAL ALA SER ALA SEQRES 8 B 155 ARG LEU MET ILE GLY VAL THR ASN PRO LEU ALA SER ALA SEQRES 9 B 155 PRO GLY SER ILE ARG GLY ASP PHE GLY VAL ASP VAL GLY SEQRES 10 B 155 ARG ASN ILE ILE GLY GLY SER ASP SER VAL GLU SER ALA SEQRES 11 B 155 ASN ARG GLU ILE ALA LEU TRP PHE LYS PRO GLU GLU LEU SEQRES 12 B 155 LEU THR GLU VAL LYS PRO ASN PRO ASN LEU TYR GLU SEQRES 1 C 155 MET SER THR ASN LYS VAL ASN LYS GLU ARG THR PHE LEU SEQRES 2 C 155 ALA VAL LYS PRO ASP GLY VAL ALA ARG GLY LEU VAL GLY SEQRES 3 C 155 GLU ILE ILE ALA ARG TYR GLU LYS LYS GLY PHE VAL LEU SEQRES 4 C 155 VAL GLY LEU LYS GLN LEU VAL PRO THR LYS ASP LEU ALA SEQRES 5 C 155 GLU SER HIS TYR ALA GLU HIS LYS GLU ARG PRO PHE PHE SEQRES 6 C 155 GLY GLY LEU VAL SER PHE ILE THR SER GLY PRO VAL VAL SEQRES 7 C 155 ALA MET VAL PHE GLU GLY LYS GLY VAL VAL ALA SER ALA SEQRES 8 C 155 ARG LEU MET ILE GLY VAL THR ASN PRO LEU ALA SER ALA SEQRES 9 C 155 PRO GLY SER ILE ARG GLY ASP PHE GLY VAL ASP VAL GLY SEQRES 10 C 155 ARG ASN ILE ILE GLY GLY SER ASP SER VAL GLU SER ALA SEQRES 11 C 155 ASN ARG GLU ILE ALA LEU TRP PHE LYS PRO GLU GLU LEU SEQRES 12 C 155 LEU THR GLU VAL LYS PRO ASN PRO ASN LEU TYR GLU HET PO4 A 161 5 HET MG A 162 1 HET ADP A 160 27 HET PO4 B 161 5 HET MG B 162 1 HET ADP B 160 27 HET PO4 C 161 5 HET MG C 162 1 HET ADP C 160 27 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 PO4 3(O4 P 3-) FORMUL 5 MG 3(MG 2+) FORMUL 6 ADP 3(C10 H15 N5 O10 P2) FORMUL 13 HOH *108(H2 O) HELIX 1 A0 PRO A 17 ALA A 21 1 5 HELIX 2 A1 VAL A 25 LYS A 35 1 11 HELIX 3 A2 LYS A 49 HIS A 55 1 7 HELIX 4 A3 ALA A 57 HIS A 59 5 3 HELIX 5 A5 PHE A 65 PHE A 71 1 7 HELIX 6 A6 VAL A 87 ILE A 95 1 9 HELIX 7 A7 PRO A 100 ALA A 102 5 3 HELIX 8 A8 ILE A 108 PHE A 112 1 5 HELIX 9 A9 VAL A 127 TRP A 137 1 11 HELIX 10 A10 PRO A 140 GLU A 142 5 3 HELIX 11 B0 PRO B 17 ALA B 21 1 5 HELIX 12 B1 VAL B 25 LYS B 34 1 10 HELIX 13 B2 LYS B 49 HIS B 55 1 7 HELIX 14 B3 ALA B 57 HIS B 59 5 3 HELIX 15 B4 PHE B 65 ILE B 72 1 8 HELIX 16 B5 VAL B 87 ILE B 95 1 9 HELIX 17 B6 ILE B 108 PHE B 112 1 5 HELIX 18 B7 VAL B 127 TRP B 137 1 11 HELIX 19 B8 PRO B 140 GLU B 142 5 3 HELIX 20 C0 PRO C 17 ALA C 21 1 5 HELIX 21 C1 VAL C 25 LYS C 35 1 11 HELIX 22 C2 LYS C 49 HIS C 55 1 7 HELIX 23 C3 ALA C 57 HIS C 59 5 3 HELIX 24 C4 PHE C 65 ILE C 72 1 8 HELIX 25 C5 VAL C 87 ILE C 95 1 9 HELIX 26 C6 PRO C 100 ALA C 102 5 3 HELIX 27 C7 ILE C 108 PHE C 112 1 5 HELIX 28 C8 VAL C 127 TRP C 137 1 11 HELIX 29 C9 PRO C 140 GLU C 142 5 3 SHEET 1 A 4 ILE A 121 GLY A 123 0 SHEET 2 A 4 ARG A 10 VAL A 15 -1 N ALA A 14 O GLY A 122 SHEET 3 A 4 PRO A 76 GLU A 83 -1 N PHE A 82 O THR A 11 SHEET 4 A 4 VAL A 38 VAL A 46 -1 N LEU A 45 O VAL A 77 SHEET 1 B 4 ILE B 121 GLY B 123 0 SHEET 2 B 4 ARG B 10 VAL B 15 -1 N ALA B 14 O GLY B 122 SHEET 3 B 4 PRO B 76 GLU B 83 -1 N PHE B 82 O THR B 11 SHEET 4 B 4 VAL B 38 VAL B 46 -1 N LEU B 45 O VAL B 77 SHEET 1 C 4 ILE C 121 GLY C 123 0 SHEET 2 C 4 ARG C 10 VAL C 15 -1 N ALA C 14 O GLY C 122 SHEET 3 C 4 VAL C 77 GLU C 83 -1 N PHE C 82 O THR C 11 SHEET 4 C 4 VAL C 38 LEU C 45 -1 N LEU C 45 O VAL C 77 LINK O1B ADP A 160 MG MG A 162 1555 1555 2.56 LINK O1A ADP A 160 MG MG A 162 1555 1555 2.53 LINK O1 PO4 A 161 MG MG A 162 1555 1555 2.24 LINK O1B ADP B 160 MG MG B 162 1555 1555 2.22 LINK O1A ADP B 160 MG MG B 162 1555 1555 2.27 LINK O2 PO4 B 161 MG MG B 162 1555 1555 2.04 LINK MG MG B 162 O HOH B 203 1555 1555 2.11 LINK MG MG B 162 O HOH B 204 1555 1555 2.07 LINK MG MG B 162 O HOH B 205 1555 1555 1.85 LINK O1A ADP C 160 MG MG C 162 1555 1555 2.15 LINK O1B ADP C 160 MG MG C 162 1555 1555 2.56 LINK O1 PO4 C 161 MG MG C 162 1555 1555 2.40 SITE 1 AC1 9 LYS A 16 HIS A 55 TYR A 56 ARG A 92 SITE 2 AC1 9 ARG A 109 GLY A 122 GLY A 123 ADP A 160 SITE 3 AC1 9 MG A 162 SITE 1 AC2 2 ADP A 160 PO4 A 161 SITE 1 AC3 11 LYS B 16 HIS B 55 TYR B 56 ARG B 92 SITE 2 AC3 11 GLY B 122 GLY B 123 ADP B 160 MG B 162 SITE 3 AC3 11 HOH B 182 HOH B 203 HOH B 205 SITE 1 AC4 5 ADP B 160 PO4 B 161 HOH B 203 HOH B 204 SITE 2 AC4 5 HOH B 205 SITE 1 AC5 8 LYS C 16 HIS C 55 TYR C 56 ARG C 92 SITE 2 AC5 8 GLY C 122 GLY C 123 ADP C 160 MG C 162 SITE 1 AC6 2 ADP C 160 PO4 C 161 SITE 1 AC7 12 LYS A 16 TYR A 56 HIS A 59 PHE A 64 SITE 2 AC7 12 LEU A 68 ARG A 92 THR A 98 ARG A 109 SITE 3 AC7 12 VAL A 116 ASN A 119 PO4 A 161 MG A 162 SITE 1 AC8 15 LYS B 16 TYR B 56 HIS B 59 PHE B 64 SITE 2 AC8 15 LEU B 68 ARG B 92 THR B 98 ARG B 109 SITE 3 AC8 15 VAL B 116 ASN B 119 PO4 B 161 MG B 162 SITE 4 AC8 15 HOH B 175 HOH B 204 HOH B 205 SITE 1 AC9 13 LYS C 16 TYR C 56 HIS C 59 ARG C 62 SITE 2 AC9 13 PHE C 64 LEU C 68 ARG C 92 THR C 98 SITE 3 AC9 13 ARG C 109 VAL C 116 ASN C 119 PO4 C 161 SITE 4 AC9 13 MG C 162 CRYST1 70.000 70.000 151.770 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014286 0.008248 0.000000 0.00000 SCALE2 0.000000 0.016496 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006589 0.00000