HEADER RNA BINDING PROTEIN 27-JAN-99 1B75 TITLE SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L25 FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (50S RIBOSOMAL PROTEIN L25); COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: MRE 600 KEYWDS RIBOSOMAL PROTEIN, RNA-BINDING PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.STOLDT,J.WOEHNERT,M.GOERLACH,L.R.BROWN REVDAT 6 27-DEC-23 1B75 1 REMARK REVDAT 5 23-MAR-22 1B75 1 REMARK REVDAT 4 24-FEB-09 1B75 1 VERSN REVDAT 3 01-APR-03 1B75 1 JRNL REVDAT 2 26-SEP-01 1B75 3 ATOM REVDAT 1 26-JAN-00 1B75 0 JRNL AUTH M.STOLDT,J.WOHNERT,M.GORLACH,L.R.BROWN JRNL TITL THE NMR STRUCTURE OF ESCHERICHIA COLI RIBOSOMAL PROTEIN L25 JRNL TITL 2 SHOWS HOMOLOGY TO GENERAL STRESS PROTEINS AND JRNL TITL 3 GLUTAMINYL-TRNA SYNTHETASES. JRNL REF EMBO J. V. 17 6377 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9799245 JRNL DOI 10.1093/EMBOJ/17.21.6377 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : GUNTERT,WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1B75 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-99. REMARK 100 THE DEPOSITION ID IS D_1000000392. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D/4D HETERONUCLEAR EXPERIMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY/SIMULAT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N LABELED L25. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 12 96.20 -67.12 REMARK 500 1 ARG A 19 -46.01 -163.86 REMARK 500 1 ARG A 21 45.86 -85.79 REMARK 500 1 ALA A 22 -48.25 -173.46 REMARK 500 1 ALA A 23 -118.58 -78.71 REMARK 500 1 ASN A 24 67.54 -158.12 REMARK 500 1 LYS A 34 -68.50 -167.89 REMARK 500 1 HIS A 44 -62.20 -102.17 REMARK 500 1 ALA A 52 -74.49 61.61 REMARK 500 1 LYS A 53 -112.32 -152.34 REMARK 500 1 VAL A 60 155.42 71.06 REMARK 500 1 ALA A 74 155.62 79.22 REMARK 500 1 GLN A 75 -79.36 -127.55 REMARK 500 1 TYR A 82 -67.92 73.98 REMARK 500 1 LYS A 85 -61.03 -140.36 REMARK 500 2 GLU A 11 -69.91 69.37 REMARK 500 2 GLN A 12 68.19 -150.23 REMARK 500 2 ARG A 19 -50.79 -164.35 REMARK 500 2 ALA A 22 -62.44 -166.44 REMARK 500 2 ALA A 23 -44.47 -169.12 REMARK 500 2 ASN A 24 90.71 -67.65 REMARK 500 2 LYS A 25 163.36 69.79 REMARK 500 2 LYS A 34 -50.36 -160.25 REMARK 500 2 ASP A 45 -71.40 -162.48 REMARK 500 2 ALA A 52 -74.84 62.75 REMARK 500 2 LYS A 53 -102.64 -144.40 REMARK 500 2 VAL A 60 151.27 75.54 REMARK 500 2 ASP A 66 83.69 58.06 REMARK 500 2 ALA A 74 140.84 73.13 REMARK 500 2 GLN A 75 -76.79 -136.88 REMARK 500 2 TYR A 82 -68.86 73.42 REMARK 500 2 LYS A 85 71.78 -155.32 REMARK 500 3 PHE A 2 168.20 63.20 REMARK 500 3 THR A 3 88.94 -153.86 REMARK 500 3 ARG A 9 96.02 -68.73 REMARK 500 3 LYS A 10 83.99 -158.33 REMARK 500 3 ARG A 18 -126.19 51.69 REMARK 500 3 LEU A 20 -67.13 -153.38 REMARK 500 3 ARG A 21 -72.07 -5.49 REMARK 500 3 ALA A 22 54.20 -147.34 REMARK 500 3 ALA A 23 -106.76 -151.29 REMARK 500 3 LYS A 25 76.44 70.59 REMARK 500 3 LYS A 34 144.85 178.08 REMARK 500 3 GLU A 35 156.51 74.09 REMARK 500 3 ASP A 45 -64.43 -161.57 REMARK 500 3 GLN A 51 -80.60 -59.47 REMARK 500 3 ALA A 52 -28.09 67.97 REMARK 500 3 LYS A 53 152.09 75.71 REMARK 500 3 ALA A 54 -70.48 68.24 REMARK 500 3 SER A 58 -63.87 -140.91 REMARK 500 REMARK 500 THIS ENTRY HAS 163 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 56 0.10 SIDE CHAIN REMARK 500 4 TYR A 57 0.07 SIDE CHAIN REMARK 500 6 PHE A 56 0.10 SIDE CHAIN REMARK 500 7 PHE A 56 0.09 SIDE CHAIN REMARK 500 7 TYR A 57 0.07 SIDE CHAIN REMARK 500 8 PHE A 56 0.08 SIDE CHAIN REMARK 500 10 PHE A 26 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1B75 A 1 94 UNP P68919 RL25_ECOLI 1 94 SEQRES 1 A 94 MET PHE THR ILE ASN ALA GLU VAL ARG LYS GLU GLN GLY SEQRES 2 A 94 LYS GLY ALA SER ARG ARG LEU ARG ALA ALA ASN LYS PHE SEQRES 3 A 94 PRO ALA ILE ILE TYR GLY GLY LYS GLU ALA PRO LEU ALA SEQRES 4 A 94 ILE GLU LEU ASP HIS ASP LYS VAL MET ASN MET GLN ALA SEQRES 5 A 94 LYS ALA GLU PHE TYR SER GLU VAL LEU THR ILE VAL VAL SEQRES 6 A 94 ASP GLY LYS GLU ILE LYS VAL LYS ALA GLN ASP VAL GLN SEQRES 7 A 94 ARG HIS PRO TYR LYS PRO LYS LEU GLN HIS ILE ASP PHE SEQRES 8 A 94 VAL ARG ALA HELIX 1 A ASP A 45 GLN A 51 1 7 HELIX 2 B GLU A 55 SER A 58 1 4 SHEET 1 I 6 THR A 3 VAL A 8 0 SHEET 2 I 6 LEU A 61 VAL A 65 1 N ILE A 4 O THR A 62 SHEET 3 I 6 GLU A 69 GLN A 78 -1 N VAL A 72 O LEU A 61 SHEET 4 I 6 HIS A 88 VAL A 92 -1 N VAL A 92 O LYS A 73 SHEET 5 I 6 PHE A 26 GLY A 32 1 N ILE A 29 O ILE A 89 SHEET 6 I 6 PRO A 37 ASP A 43 -1 N ILE A 40 O ALA A 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1