HEADER OXYGEN TRANSPORT 08-FEB-99 1B86 TITLE HUMAN DEOXYHAEMOGLOBIN-2,3-DIPHOSPHOGLYCERATE COMPLEX CAVEAT 1B86 HIS D 545 HAS WRONG CHIRALITY FOR AN L-AMINO ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (HEMOGLOBIN; ALPHA CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PROTEIN (HEMOGLOBIN; BETA CHAIN); COMPND 6 CHAIN: B, D; COMPND 7 OTHER_DETAILS: 2,3-DIPHOSPHOGLYCERATE COMPLEX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL: RED BLOOD CELLS; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 CELL: RED BLOOD CELLS KEYWDS ALLOSTERIC EFFECTOR, 2, 3-DIPHOSPHOGLYCERATE, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR V.RICHARD,G.G.DODSON,Y.MAUGUEN REVDAT 9 22-MAY-24 1B86 1 REMARK REVDAT 8 15-MAR-23 1B86 1 REMARK REVDAT 7 08-FEB-23 1B86 1 REMARK LINK CRYST1 ATOM REVDAT 6 07-SEP-11 1B86 1 CRYST1 HET HETATM REMARK REVDAT 6 2 1 VERSN REVDAT 5 22-SEP-09 1B86 1 CRYST1 REVDAT 4 24-FEB-09 1B86 1 VERSN REVDAT 3 01-APR-03 1B86 1 JRNL REVDAT 2 19-FEB-99 1B86 3 REVDAT 1 14-FEB-99 1B86 0 JRNL AUTH V.RICHARD,G.G.DODSON,Y.MAUGUEN JRNL TITL HUMAN DEOXYHAEMOGLOBIN-2,3-DIPHOSPHOGLYCERATE COMPLEX JRNL TITL 2 LOW-SALT STRUCTURE AT 2.5 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 233 270 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8377203 JRNL DOI 10.1006/JMBI.1993.1505 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 77650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1690 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1690 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 77650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 191 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.017 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.025 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-99. REMARK 100 THE DEPOSITION ID IS D_1000000455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28482 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: PROLSQ REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG LEU A 29 O HOH A 169 1.29 REMARK 500 CD2 LEU A 29 O HOH A 169 1.29 REMARK 500 NE2 HIS D 686 O HOH D 102 1.57 REMARK 500 CD2 HIS D 686 O HOH D 102 1.85 REMARK 500 CD2 LEU D 571 O HOH D 128 1.90 REMARK 500 O HOH B 70 O HOH B 71 2.02 REMARK 500 NC HEM D 691 O HOH D 127 2.02 REMARK 500 CA ALA B 153 O HOH B 49 2.05 REMARK 500 ND HEM D 691 O HOH D 127 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 170 O HOH D 132 4554 0.01 REMARK 500 OE1 GLU A 23 O HOH B 28 3445 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY D 626 N GLY D 626 CA 0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 1 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 LEU A 2 CB - CG - CD1 ANGL. DEV. = -12.1 DEGREES REMARK 500 LYS A 7 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 LYS A 7 CA - C - O ANGL. DEV. = 17.6 DEGREES REMARK 500 LYS A 7 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 THR A 8 O - C - N ANGL. DEV. = 12.5 DEGREES REMARK 500 VAL A 10 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 LYS A 11 CD - CE - NZ ANGL. DEV. = 36.9 DEGREES REMARK 500 TRP A 14 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 ALA A 19 N - CA - CB ANGL. DEV. = -8.9 DEGREES REMARK 500 HIS A 20 CA - CB - CG ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU A 23 CA - CB - CG ANGL. DEV. = 24.5 DEGREES REMARK 500 TYR A 24 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 TYR A 24 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 GLU A 27 OE1 - CD - OE2 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLU A 27 CG - CD - OE1 ANGL. DEV. = -12.8 DEGREES REMARK 500 GLU A 27 CG - CD - OE2 ANGL. DEV. = 23.4 DEGREES REMARK 500 LEU A 29 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLU A 30 OE1 - CD - OE2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 MET A 32 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU A 34 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 TYR A 42 CB - CG - CD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 PHE A 46 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE A 46 O - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 47 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 GLY A 59 CA - C - O ANGL. DEV. = 13.7 DEGREES REMARK 500 LYS A 60 CA - CB - CG ANGL. DEV. = 20.4 DEGREES REMARK 500 ASP A 64 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 VAL A 70 CA - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 HIS A 72 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 PRO A 77 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO A 77 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU A 83 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 85 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG A 92 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = 12.8 DEGREES REMARK 500 VAL A 96 CA - C - O ANGL. DEV. = -15.7 DEGREES REMARK 500 ASN A 97 CB - CG - OD1 ANGL. DEV. = -18.1 DEGREES REMARK 500 LYS A 99 CG - CD - CE ANGL. DEV. = 24.4 DEGREES REMARK 500 LYS A 99 CA - C - N ANGL. DEV. = 13.4 DEGREES REMARK 500 HIS A 103 CG - ND1 - CE1 ANGL. DEV. = 6.3 DEGREES REMARK 500 HIS A 103 ND1 - CE1 - NE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 HIS A 103 CE1 - NE2 - CD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 CYS A 104 CA - CB - SG ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 248 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 57.94 -153.60 REMARK 500 ASN B 223 53.18 -150.37 REMARK 500 LYS C 490 -56.17 -120.56 REMARK 500 ASP D 564 -73.50 -52.41 REMARK 500 TYR D 578 79.67 -116.76 REMARK 500 ARG D 583 -16.69 -49.41 REMARK 500 HIS D 620 42.54 -143.33 REMARK 500 ASN D 623 77.31 -160.30 REMARK 500 CYS D 636 -70.52 -72.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 141 0.10 SIDE CHAIN REMARK 500 ARG B 183 0.10 SIDE CHAIN REMARK 500 ARG B 247 0.21 SIDE CHAIN REMARK 500 ARG C 492 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 143 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 143 NA 88.1 REMARK 620 3 HEM A 143 NB 85.1 86.3 REMARK 620 4 HEM A 143 NC 100.8 169.8 89.5 REMARK 620 5 HEM A 143 ND 109.6 96.4 165.1 85.4 REMARK 620 6 OXY A 144 O1 167.9 81.5 88.0 89.1 78.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 291 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 126 O REMARK 620 2 HEM B 291 NA 103.4 REMARK 620 3 HEM B 291 NB 95.3 87.3 REMARK 620 4 HEM B 291 NC 60.0 162.9 90.6 REMARK 620 5 HEM B 291 ND 78.1 90.0 172.1 89.8 REMARK 620 6 HIS B 235 NE2 156.7 92.9 102.1 104.1 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 543 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 487 NE2 REMARK 620 2 HEM C 543 NA 98.1 REMARK 620 3 HEM C 543 NB 94.0 89.8 REMARK 620 4 HEM C 543 NC 96.6 165.3 88.2 REMARK 620 5 HEM C 543 ND 102.0 91.3 163.7 86.7 REMARK 620 6 OXY C 544 O1 163.4 92.7 73.5 72.8 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 691 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 127 O REMARK 620 2 HEM D 691 NA 104.2 REMARK 620 3 HEM D 691 NB 100.6 86.8 REMARK 620 4 HEM D 691 NC 58.1 159.8 87.5 REMARK 620 5 HEM D 691 ND 59.6 88.4 157.6 89.6 REMARK 620 6 HIS D 635 NE2 139.5 104.0 109.5 96.1 92.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY C 544 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 691 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DG2 D 701 DBREF 1B86 A 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 1B86 B 144 289 UNP P68871 HBB_HUMAN 1 146 DBREF 1B86 C 401 541 UNP P69905 HBA_HUMAN 1 141 DBREF 1B86 D 544 689 UNP P68871 HBB_HUMAN 1 146 SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET HEM A 143 43 HET OXY A 144 2 HET HEM B 291 43 HET HEM C 543 43 HET OXY C 544 2 HET HEM D 691 43 HET DG2 D 701 15 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETNAM DG2 (2R)-2,3-DIPHOSPHOGLYCERIC ACID HETSYN HEM HEME HETSYN DG2 2,3-BISPHOSPHOGLYCERIC ACID; 2,3-BISPHOSPHOGLYCERATE; HETSYN 2 DG2 2,3-BPG; 2,3-DIPHOSPHOGLYCERIC ACID; 2,3- HETSYN 3 DG2 DIPHOSPHOGLYCERATE; 2,3-DPG; (2~{R})-2,3- HETSYN 4 DG2 DIPHOSPHONOOXYPROPANOIC ACID FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 OXY 2(O2) FORMUL 11 DG2 C3 H8 O10 P2 FORMUL 12 HOH *136(H2 O) HELIX 1 1 PRO A 4 SER A 35 1 32 HELIX 2 2 PRO A 37 TYR A 42 5 6 HELIX 3 3 ALA A 53 HIS A 72 1 20 HELIX 4 4 MET A 76 ALA A 79 1 4 HELIX 5 5 SER A 81 HIS A 89 1 9 HELIX 6 6 PRO A 95 HIS A 112 5 18 HELIX 7 7 PRO A 119 LEU A 136 1 18 HELIX 8 8 PRO B 148 LYS B 160 1 13 HELIX 9 9 VAL B 163 VAL B 177 1 15 HELIX 10 10 PRO B 179 PHE B 184 5 6 HELIX 11 11 GLU B 186 PHE B 188 5 3 HELIX 12 12 PRO B 194 MET B 198 1 5 HELIX 13 13 PRO B 201 HIS B 220 1 20 HELIX 14 14 LEU B 224 ASP B 237 1 14 HELIX 15 15 PRO B 243 GLU B 264 5 22 HELIX 16 16 PRO B 267 ALA B 285 1 19 HELIX 17 17 PRO C 404 SER C 435 1 32 HELIX 18 18 PRO C 437 TYR C 442 5 6 HELIX 19 19 ALA C 453 ALA C 471 1 19 HELIX 20 20 MET C 476 ALA C 479 1 4 HELIX 21 21 SER C 481 HIS C 489 1 9 HELIX 22 22 PRO C 495 ALA C 510 5 16 HELIX 23 23 PRO C 519 LYS C 539 1 21 HELIX 24 24 PRO D 548 LYS D 560 1 13 HELIX 25 25 VAL D 563 VAL D 577 1 15 HELIX 26 26 PRO D 579 PHE D 584 5 6 HELIX 27 27 GLU D 586 PHE D 588 5 3 HELIX 28 28 PRO D 594 GLY D 599 1 6 HELIX 29 29 PRO D 601 ALA D 619 1 19 HELIX 30 30 LEU D 624 ASP D 637 1 14 HELIX 31 31 PRO D 643 GLU D 664 5 22 HELIX 32 32 PRO D 667 HIS D 686 1 20 LINK NE2 HIS A 87 FE HEM A 143 1555 1555 2.10 LINK FE HEM A 143 O1 OXY A 144 1555 1555 1.93 LINK O HOH B 126 FE HEM B 291 1555 1555 2.53 LINK NE2 HIS B 235 FE HEM B 291 1555 1555 2.13 LINK NE2 HIS C 487 FE HEM C 543 1555 1555 2.11 LINK FE HEM C 543 O1 OXY C 544 1555 1555 2.03 LINK O HOH D 127 FE HEM D 691 1555 1555 2.18 LINK NE2 HIS D 635 FE HEM D 691 1555 1555 2.07 SITE 1 AC1 14 TYR A 42 PHE A 43 HIS A 45 PHE A 46 SITE 2 AC1 14 HIS A 58 LEU A 83 HIS A 87 LEU A 91 SITE 3 AC1 14 VAL A 93 ASN A 97 PHE A 98 VAL A 132 SITE 4 AC1 14 LEU A 136 OXY A 144 SITE 1 AC2 3 HIS A 58 VAL A 62 HEM A 143 SITE 1 AC3 17 HIS A 72 ASP A 75 HOH B 65 HOH B 66 SITE 2 AC3 17 HOH B 126 PHE B 184 HIS B 206 LYS B 209 SITE 3 AC3 17 VAL B 210 ALA B 213 LEU B 231 LEU B 234 SITE 4 AC3 17 HIS B 235 LEU B 239 ASN B 245 LEU B 249 SITE 5 AC3 17 LEU B 284 SITE 1 AC4 19 LYS B 160 GLU B 264 HOH C 50 HOH C 59 SITE 2 AC4 19 TYR C 442 PHE C 443 HIS C 445 PHE C 446 SITE 3 AC4 19 HIS C 458 LYS C 461 ALA C 465 LEU C 486 SITE 4 AC4 19 HIS C 487 LEU C 491 VAL C 493 ASN C 497 SITE 5 AC4 19 PHE C 498 LEU C 536 OXY C 544 SITE 1 AC5 3 PHE C 443 HIS C 458 HEM C 543 SITE 1 AC6 10 HOH D 127 PHE D 585 HIS D 606 LYS D 609 SITE 2 AC6 10 VAL D 610 HIS D 635 LEU D 639 ASN D 645 SITE 3 AC6 10 LEU D 649 LEU D 684 SITE 1 AC7 7 HIS B 145 LYS B 225 HOH D 105 HOH D 112 SITE 2 AC7 7 HOH D 123 HIS D 545 LYS D 625 CRYST1 96.300 98.080 65.760 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 24.07500 ORIGX2 0.000000 -1.000000 0.000000 24.52000 ORIGX3 0.000000 0.000000 -1.000000 0.00000 SCALE1 0.010384 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015207 0.00000