HEADER FERREDOXIN 15-FEB-99 1B9R TITLE TERPREDOXIN FROM PSEUDOMONAS SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (TERPREDOXIN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS STRUCTURE FROM MOLMOL, FERREDOXIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR H.MO,S.S.POCHAPSKY,T.C.POCHAPSKY REVDAT 4 27-DEC-23 1B9R 1 REMARK REVDAT 3 16-FEB-22 1B9R 1 REMARK REVDAT 2 24-FEB-09 1B9R 1 VERSN REVDAT 1 11-MAY-99 1B9R 0 JRNL AUTH H.MO,S.S.POCHAPSKY,T.C.POCHAPSKY JRNL TITL A MODEL FOR THE SOLUTION STRUCTURE OF OXIDIZED TERPREDOXIN, JRNL TITL 2 A FE2S2 FERREDOXIN FROM PSEUDOMONAS. JRNL REF BIOCHEMISTRY V. 38 5666 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10220356 JRNL DOI 10.1021/BI983063R REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.PETERSON,J.Y.LU,J.GEISSELSODER,S.GRAHAM-LORENCE, REMARK 1 AUTH 2 C.CARMONA,F.WITNEY,M.C.LORENCE REMARK 1 TITL CYTOCHROME P-450TERP. ISOLATION AND PURIFICATION OF THE REMARK 1 TITL 2 PROTEIN AND CLONING AND SEQUENCING OF ITS OPERON. REMARK 1 REF J.BIOL.CHEM. V. 267 14193 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.85 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1B9R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-FEB-99. REMARK 100 THE DEPOSITION ID IS D_1000000488. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING DOUBLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 15N- LABELED TERPREDOXIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLU A 53 O ILE A 98 1.47 REMARK 500 O VAL A 4 H VAL A 99 1.47 REMARK 500 O TRP A 56 H VAL A 60 1.48 REMARK 500 H VAL A 3 O VAL A 15 1.54 REMARK 500 O SER A 85 H VAL A 88 1.59 REMARK 500 O ASP A 91 H SER A 93 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 12 144.31 168.86 REMARK 500 1 TYR A 13 61.77 -150.93 REMARK 500 1 VAL A 15 -156.20 -156.74 REMARK 500 1 ALA A 27 -74.30 -27.90 REMARK 500 1 PRO A 33 -28.15 -33.72 REMARK 500 1 ILE A 35 78.74 -63.52 REMARK 500 1 VAL A 36 -90.27 -159.93 REMARK 500 1 GLU A 38 -79.77 -94.86 REMARK 500 1 CYS A 43 44.24 72.01 REMARK 500 1 ALA A 46 41.68 -146.26 REMARK 500 1 ARG A 49 75.54 -69.71 REMARK 500 1 ASP A 54 22.56 -78.14 REMARK 500 1 GLU A 62 170.23 -45.78 REMARK 500 1 ASN A 64 175.01 -53.54 REMARK 500 1 PRO A 65 5.14 -69.83 REMARK 500 1 LEU A 84 91.78 -51.81 REMARK 500 1 PRO A 92 23.83 -59.23 REMARK 500 1 PRO A 104 92.02 -53.08 REMARK 500 2 SER A 10 -32.21 -170.59 REMARK 500 2 GLU A 12 142.18 171.65 REMARK 500 2 TYR A 13 62.78 -151.47 REMARK 500 2 VAL A 15 -155.52 -161.62 REMARK 500 2 ASP A 19 107.37 -34.86 REMARK 500 2 ALA A 27 -74.48 -28.29 REMARK 500 2 PRO A 33 -155.38 -55.87 REMARK 500 2 ILE A 35 159.49 -37.80 REMARK 500 2 VAL A 36 130.05 -26.67 REMARK 500 2 ALA A 37 -159.56 -78.48 REMARK 500 2 CYS A 43 35.34 36.06 REMARK 500 2 CYS A 45 -164.37 -116.37 REMARK 500 2 ALA A 46 21.61 -157.89 REMARK 500 2 CYS A 48 40.15 -94.66 REMARK 500 2 ASP A 54 20.80 -79.04 REMARK 500 2 GLU A 62 -117.76 -48.09 REMARK 500 2 PRO A 77 -168.95 -65.76 REMARK 500 2 MET A 78 -166.49 -124.97 REMARK 500 2 THR A 79 -160.66 -106.09 REMARK 500 2 ILE A 90 163.88 -47.11 REMARK 500 2 PRO A 92 45.82 -66.15 REMARK 500 2 SER A 93 -36.96 -141.62 REMARK 500 2 PRO A 104 98.35 -54.28 REMARK 500 3 ASP A 7 -166.78 -171.14 REMARK 500 3 GLU A 12 144.24 169.81 REMARK 500 3 TYR A 13 57.33 -146.97 REMARK 500 3 VAL A 15 -154.71 -168.02 REMARK 500 3 ASP A 19 107.42 -43.35 REMARK 500 3 ALA A 27 -72.86 -28.55 REMARK 500 3 VAL A 32 160.14 -49.80 REMARK 500 3 ILE A 35 -90.78 35.59 REMARK 500 3 VAL A 36 127.56 -171.16 REMARK 500 REMARK 500 THIS ENTRY HAS 288 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 106 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 FES A 106 S1 105.2 REMARK 620 3 FES A 106 S2 105.1 105.3 REMARK 620 4 CYS A 45 SG 128.9 107.3 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 106 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 48 SG REMARK 620 2 FES A 106 S1 106.2 REMARK 620 3 FES A 106 S2 107.9 105.4 REMARK 620 4 CYS A 86 SG 122.0 107.9 106.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 106 DBREF 1B9R A 1 105 UNP P33007 TERPB_PSESP 1 105 SEQRES 1 A 105 PRO ARG VAL VAL PHE ILE ASP GLU GLN SER GLY GLU TYR SEQRES 2 A 105 ALA VAL ASP ALA GLN ASP GLY GLN SER LEU MET GLU VAL SEQRES 3 A 105 ALA THR GLN ASN GLY VAL PRO GLY ILE VAL ALA GLU CYS SEQRES 4 A 105 GLY GLY SER CYS VAL CYS ALA THR CYS ARG ILE GLU ILE SEQRES 5 A 105 GLU ASP ALA TRP VAL GLU ILE VAL GLY GLU ALA ASN PRO SEQRES 6 A 105 ASP GLU ASN ASP LEU LEU GLN SER THR GLY GLU PRO MET SEQRES 7 A 105 THR ALA GLY THR ARG LEU SER CYS GLN VAL PHE ILE ASP SEQRES 8 A 105 PRO SER MET ASP GLY LEU ILE VAL ARG VAL PRO LEU PRO SEQRES 9 A 105 ALA HET FES A 106 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 FES FE2 S2 HELIX 1 H1 LEU A 23 ASN A 30 5 8 HELIX 2 H2 ALA A 55 VAL A 60 5 6 HELIX 3 H3 PRO A 65 SER A 73 5 9 SHEET 1 S1 1 PRO A 1 ASP A 7 0 SHEET 1 S2 1 GLU A 12 ALA A 17 0 SHEET 1 S3 1 GLN A 21 SER A 22 0 SHEET 1 S4 1 ILE A 50 GLU A 53 0 SHEET 1 S5 1 THR A 82 ARG A 83 0 SHEET 1 S6 1 VAL A 88 ILE A 90 0 SHEET 1 S7 1 LEU A 97 VAL A 101 0 LINK SG CYS A 39 FE1 FES A 106 1555 1555 2.20 LINK SG CYS A 45 FE1 FES A 106 1555 1555 2.20 LINK SG CYS A 48 FE2 FES A 106 1555 1555 2.20 LINK SG CYS A 86 FE2 FES A 106 1555 1555 2.20 SITE 1 AC1 6 GLU A 38 CYS A 39 CYS A 45 CYS A 48 SITE 2 AC1 6 LEU A 84 CYS A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1