HEADER BILIN BINDING 19-SEP-90 1BBP TITLE MOLECULAR STRUCTURE OF THE BILIN BINDING PROTEIN (BBP) FROM PIERIS TITLE 2 BRASSICAE AFTER REFINEMENT AT 2.0 ANGSTROMS RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILIN BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PIERIS BRASSICAE; SOURCE 3 ORGANISM_COMMON: LARGE CABBAGE WHITE; SOURCE 4 ORGANISM_TAXID: 7116 KEYWDS BILIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR R.HUBER,M.SCHNEIDER,I.MAYR,R.MUELLER,R.DEUTZMANN,F.SUTER,H.ZUBER, AUTHOR 2 H.FALK,H.KAYSER REVDAT 5 29-NOV-17 1BBP 1 HELIX REVDAT 4 24-FEB-09 1BBP 1 VERSN REVDAT 3 01-APR-03 1BBP 1 JRNL REVDAT 2 15-JAN-92 1BBP 1 HET FORMUL REVDAT 1 15-OCT-91 1BBP 0 JRNL AUTH R.HUBER,M.SCHNEIDER,I.MAYR,R.MULLER,R.DEUTZMANN,F.SUTER, JRNL AUTH 2 H.ZUBER,H.FALK,H.KAYSER JRNL TITL MOLECULAR STRUCTURE OF THE BILIN BINDING PROTEIN (BBP) FROM JRNL TITL 2 PIERIS BRASSICAE AFTER REFINEMENT AT 2.0 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 198 499 1987 JRNL REFN ISSN 0022-2836 JRNL PMID 3430616 JRNL DOI 10.1016/0022-2836(87)90296-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.HUBER,M.SCHNEIDER,O.EPP,I.MAYR,A.MESSERSCHMIDT, REMARK 1 AUTH 2 J.PFLUGRATH,H.KAYSER REMARK 1 TITL CRYSTALLIZATION, CRYSTAL STRUCTURE ANALYSIS AND PRELIMINARY REMARK 1 TITL 2 MOLECULAR MODEL OF THE BILIN BINDING PROTEIN FROM THE INSECT REMARK 1 TITL 3 PIERIS BRASSICAE REMARK 1 REF J.MOL.BIOL. V. 195 423 1987 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : EREF REMARK 3 AUTHORS : JACK,LEVITT REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 172 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.670 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.05000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW RELATE REMARK 300 CHAINS A, B, C, AND D AS FOLLOWS: REMARK 300 REMARK 300 MTRIX 1: A TO B REMARK 300 MTRIX 2: A TO C REMARK 300 MTRIX 3: A TO D REMARK 300 MTRIX 4: B TO C REMARK 300 MTRIX 5: B TO D REMARK 300 MTRIX 6: C TO D REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 93 OG1 CG2 REMARK 470 SER D 171 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR B 49 NE2 HIS D 24 1554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 20 NE1 TRP A 20 CE2 -0.098 REMARK 500 TRP A 27 NE1 TRP A 27 CE2 -0.095 REMARK 500 TRP A 28 NE1 TRP A 28 CE2 -0.099 REMARK 500 TRP A 45 NE1 TRP A 45 CE2 -0.092 REMARK 500 HIS A 90 CB HIS A 90 CG -0.122 REMARK 500 LYS A 99 CG LYS A 99 CD 0.309 REMARK 500 LYS A 126 CD LYS A 126 CE 0.350 REMARK 500 TRP A 133 NE1 TRP A 133 CE2 -0.093 REMARK 500 TRP B 20 NE1 TRP B 20 CE2 -0.092 REMARK 500 TRP B 27 NE1 TRP B 27 CE2 -0.100 REMARK 500 TRP B 28 NE1 TRP B 28 CE2 -0.091 REMARK 500 TRP B 45 NE1 TRP B 45 CE2 -0.100 REMARK 500 HIS B 90 CB HIS B 90 CG -0.245 REMARK 500 HIS B 90 CG HIS B 90 CD2 -0.141 REMARK 500 LYS B 99 CG LYS B 99 CD 0.369 REMARK 500 TRP B 133 NE1 TRP B 133 CE2 -0.090 REMARK 500 TRP C 20 NE1 TRP C 20 CE2 -0.096 REMARK 500 TRP C 27 NE1 TRP C 27 CE2 -0.096 REMARK 500 TRP C 28 NE1 TRP C 28 CE2 -0.092 REMARK 500 TRP C 45 NE1 TRP C 45 CE2 -0.096 REMARK 500 HIS C 90 CB HIS C 90 CG -0.256 REMARK 500 HIS C 90 CG HIS C 90 CD2 -0.136 REMARK 500 GLU C 123 CG GLU C 123 CD 0.106 REMARK 500 GLU C 123 CD GLU C 123 OE2 0.077 REMARK 500 TRP C 133 NE1 TRP C 133 CE2 -0.091 REMARK 500 TRP D 20 NE1 TRP D 20 CE2 -0.094 REMARK 500 TRP D 27 NE1 TRP D 27 CE2 -0.104 REMARK 500 TRP D 28 NE1 TRP D 28 CE2 -0.097 REMARK 500 TRP D 45 NE1 TRP D 45 CE2 -0.097 REMARK 500 HIS D 90 CB HIS D 90 CG -0.269 REMARK 500 HIS D 90 CG HIS D 90 CD2 -0.152 REMARK 500 TRP D 133 NE1 TRP D 133 CE2 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 33 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LYS A 99 CG - CD - CE ANGL. DEV. = -20.9 DEGREES REMARK 500 LYS A 99 CD - CE - NZ ANGL. DEV. = 16.4 DEGREES REMARK 500 ILE A 114 CB - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 ILE A 114 CA - CB - CG1 ANGL. DEV. = 11.5 DEGREES REMARK 500 LYS A 126 CD - CE - NZ ANGL. DEV. = -20.5 DEGREES REMARK 500 TYR B 33 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 HIS B 90 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 HIS B 90 ND1 - CG - CD2 ANGL. DEV. = 13.2 DEGREES REMARK 500 HIS B 90 CG - CD2 - NE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 LYS B 99 CG - CD - CE ANGL. DEV. = -20.1 DEGREES REMARK 500 LYS B 99 CD - CE - NZ ANGL. DEV. = 16.4 DEGREES REMARK 500 PHE B 131 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR C 33 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 HIS C 90 CB - CG - CD2 ANGL. DEV. = -13.0 DEGREES REMARK 500 HIS C 90 ND1 - CG - CD2 ANGL. DEV. = 14.0 DEGREES REMARK 500 HIS C 90 CG - CD2 - NE2 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU C 123 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 PHE C 131 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 HIS D 90 CB - CG - CD2 ANGL. DEV. = -12.3 DEGREES REMARK 500 HIS D 90 ND1 - CG - CD2 ANGL. DEV. = 14.6 DEGREES REMARK 500 HIS D 90 CG - CD2 - NE2 ANGL. DEV. = -8.5 DEGREES REMARK 500 LYS D 126 CD - CE - NZ ANGL. DEV. = 17.1 DEGREES REMARK 500 PHE D 131 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 40 -5.00 74.88 REMARK 500 LYS A 53 40.37 -83.56 REMARK 500 HIS A 64 54.63 37.73 REMARK 500 LYS A 111 -63.80 -146.64 REMARK 500 TYR B 40 -16.39 79.64 REMARK 500 LYS B 111 -63.49 -144.75 REMARK 500 TYR C 40 -5.43 73.37 REMARK 500 LYS C 111 -47.45 -141.73 REMARK 500 LYS D 39 121.52 -35.92 REMARK 500 TYR D 40 -8.19 74.48 REMARK 500 LYS D 111 -58.88 -126.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 152 0.09 SIDE CHAIN REMARK 500 TYR B 152 0.07 SIDE CHAIN REMARK 500 TYR C 152 0.07 SIDE CHAIN REMARK 500 TYR D 152 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 87 10.44 REMARK 500 TYR B 60 -11.56 REMARK 500 TYR C 60 -10.05 REMARK 500 TYR D 60 -11.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLV A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLV B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLV C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLV D 500 DBREF 1BBP A 2 178 UNP P09464 BBP_PIEBR 16 188 DBREF 1BBP B 2 178 UNP P09464 BBP_PIEBR 16 188 DBREF 1BBP C 2 178 UNP P09464 BBP_PIEBR 16 188 DBREF 1BBP D 2 178 UNP P09464 BBP_PIEBR 16 188 SEQRES 1 A 173 ASN VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 A 173 VAL ASP ASN PHE ASP TRP SER ASN TYR HIS GLY LYS TRP SEQRES 3 A 173 TRP GLU VAL ALA LYS TYR PRO ASN SER VAL GLU LYS TYR SEQRES 4 A 173 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 A 173 SER VAL LYS VAL SER ASN TYR HIS VAL ILE HIS GLY LYS SEQRES 6 A 173 GLU TYR PHE ILE GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 A 173 SER LYS ILE GLY LYS ILE TYR HIS LYS LEU THR TYR GLY SEQRES 8 A 173 GLY VAL THR LYS GLU ASN VAL PHE ASN VAL LEU SER THR SEQRES 9 A 173 ASP ASN LYS ASN TYR ILE ILE GLY TYR TYR CYS LYS TYR SEQRES 10 A 173 ASP GLU ASP LYS LYS GLY HIS GLN ASP PHE VAL TRP VAL SEQRES 11 A 173 LEU SER ARG SER LYS VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 A 173 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 A 173 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 A 173 CYS LYS VAL ASN SEQRES 1 B 173 ASN VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 B 173 VAL ASP ASN PHE ASP TRP SER ASN TYR HIS GLY LYS TRP SEQRES 3 B 173 TRP GLU VAL ALA LYS TYR PRO ASN SER VAL GLU LYS TYR SEQRES 4 B 173 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 B 173 SER VAL LYS VAL SER ASN TYR HIS VAL ILE HIS GLY LYS SEQRES 6 B 173 GLU TYR PHE ILE GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 B 173 SER LYS ILE GLY LYS ILE TYR HIS LYS LEU THR TYR GLY SEQRES 8 B 173 GLY VAL THR LYS GLU ASN VAL PHE ASN VAL LEU SER THR SEQRES 9 B 173 ASP ASN LYS ASN TYR ILE ILE GLY TYR TYR CYS LYS TYR SEQRES 10 B 173 ASP GLU ASP LYS LYS GLY HIS GLN ASP PHE VAL TRP VAL SEQRES 11 B 173 LEU SER ARG SER LYS VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 B 173 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 B 173 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 B 173 CYS LYS VAL ASN SEQRES 1 C 173 ASN VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 C 173 VAL ASP ASN PHE ASP TRP SER ASN TYR HIS GLY LYS TRP SEQRES 3 C 173 TRP GLU VAL ALA LYS TYR PRO ASN SER VAL GLU LYS TYR SEQRES 4 C 173 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 C 173 SER VAL LYS VAL SER ASN TYR HIS VAL ILE HIS GLY LYS SEQRES 6 C 173 GLU TYR PHE ILE GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 C 173 SER LYS ILE GLY LYS ILE TYR HIS LYS LEU THR TYR GLY SEQRES 8 C 173 GLY VAL THR LYS GLU ASN VAL PHE ASN VAL LEU SER THR SEQRES 9 C 173 ASP ASN LYS ASN TYR ILE ILE GLY TYR TYR CYS LYS TYR SEQRES 10 C 173 ASP GLU ASP LYS LYS GLY HIS GLN ASP PHE VAL TRP VAL SEQRES 11 C 173 LEU SER ARG SER LYS VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 C 173 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 C 173 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 C 173 CYS LYS VAL ASN SEQRES 1 D 173 ASN VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 D 173 VAL ASP ASN PHE ASP TRP SER ASN TYR HIS GLY LYS TRP SEQRES 3 D 173 TRP GLU VAL ALA LYS TYR PRO ASN SER VAL GLU LYS TYR SEQRES 4 D 173 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 D 173 SER VAL LYS VAL SER ASN TYR HIS VAL ILE HIS GLY LYS SEQRES 6 D 173 GLU TYR PHE ILE GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 D 173 SER LYS ILE GLY LYS ILE TYR HIS LYS LEU THR TYR GLY SEQRES 8 D 173 GLY VAL THR LYS GLU ASN VAL PHE ASN VAL LEU SER THR SEQRES 9 D 173 ASP ASN LYS ASN TYR ILE ILE GLY TYR TYR CYS LYS TYR SEQRES 10 D 173 ASP GLU ASP LYS LYS GLY HIS GLN ASP PHE VAL TRP VAL SEQRES 11 D 173 LEU SER ARG SER LYS VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 D 173 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 D 173 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 D 173 CYS LYS VAL ASN HET BLV A 500 43 HET BLV B 500 43 HET BLV C 500 43 HET BLV D 500 43 HETNAM BLV BILIVERDIN IX GAMMA CHROMOPHORE FORMUL 5 BLV 4(C33 H34 N4 O6) FORMUL 9 HOH *424(H2 O) HELIX 1 H1A TRP A 20 ASN A 22 5 3 HELIX 2 H2A GLU A 144 GLY A 155 1 12 HELIX 3 H3A SER A 162 LYS A 164 5 3 HELIX 4 H4A GLU A 172 CYS A 175 1 4 HELIX 5 H1B TRP B 20 ASN B 22 5 3 HELIX 6 H2B GLU B 144 GLY B 155 1 12 HELIX 7 H3B SER B 162 LYS B 164 5 3 HELIX 8 H4B GLU B 172 CYS B 175 1 4 HELIX 9 H1C TRP C 20 ASN C 22 5 3 HELIX 10 H2C GLU C 144 GLY C 155 1 12 HELIX 11 H3C SER C 162 LYS C 164 5 3 HELIX 12 H4C GLU C 172 CYS C 175 1 4 HELIX 13 H1D TRP D 20 ASN D 22 5 3 HELIX 14 H2D GLU D 144 GLY D 155 1 12 HELIX 15 H3D SER D 162 LYS D 164 5 3 HELIX 16 H4D GLU D 172 CYS D 175 1 4 SHEET 1 S1A 5 VAL A 166 TYR A 167 0 SHEET 2 S1A 5 ALA A 31 LYS A 32 -1 SHEET 3 S1A 5 GLY A 127 SER A 136 -1 SHEET 4 S1A 5 TYR A 113 ASP A 122 -1 SHEET 5 S1A 5 SER A 107 THR A 108 -1 SHEET 1 S2A 6 GLY A 25 TRP A 28 0 SHEET 2 S2A 6 GLY A 44 PRO A 50 -1 SHEET 3 S2A 6 VAL A 55 ILE A 63 -1 SHEET 4 S2A 6 LYS A 66 TYR A 75 -1 SHEET 5 S2A 6 LYS A 87 TYR A 94 -1 SHEET 6 S2A 6 VAL A 97 ASN A 104 -1 SHEET 1 S1B 5 VAL B 166 TYR B 167 0 SHEET 2 S1B 5 ALA B 31 LYS B 32 -1 SHEET 3 S1B 5 GLY B 127 SER B 136 -1 SHEET 4 S1B 5 TYR B 113 ASP B 122 -1 SHEET 5 S1B 5 SER B 107 THR B 108 -1 SHEET 1 S2B 6 GLY B 25 TRP B 28 0 SHEET 2 S2B 6 GLY B 44 PRO B 50 -1 SHEET 3 S2B 6 VAL B 55 ILE B 63 -1 SHEET 4 S2B 6 LYS B 66 TYR B 75 -1 SHEET 5 S2B 6 LYS B 87 TYR B 94 -1 SHEET 6 S2B 6 VAL B 97 ASN B 104 -1 SHEET 1 S1C 5 VAL C 166 TYR C 167 0 SHEET 2 S1C 5 ALA C 31 LYS C 32 -1 SHEET 3 S1C 5 GLY C 127 SER C 136 -1 SHEET 4 S1C 5 TYR C 113 ASP C 122 -1 SHEET 5 S1C 5 SER C 107 THR C 108 -1 SHEET 1 S2C 6 GLY C 25 TRP C 28 0 SHEET 2 S2C 6 GLY C 44 PRO C 50 -1 SHEET 3 S2C 6 VAL C 55 ILE C 63 -1 SHEET 4 S2C 6 LYS C 66 TYR C 75 -1 SHEET 5 S2C 6 LYS C 87 TYR C 94 -1 SHEET 6 S2C 6 VAL C 97 ASN C 104 -1 SHEET 1 S1D 5 VAL D 166 TYR D 167 0 SHEET 2 S1D 5 ALA D 31 LYS D 32 -1 SHEET 3 S1D 5 GLY D 127 SER D 136 -1 SHEET 4 S1D 5 TYR D 113 ASP D 122 -1 SHEET 5 S1D 5 SER D 107 THR D 108 -1 SHEET 1 S2D 6 GLY D 25 TRP D 28 0 SHEET 2 S2D 6 GLY D 44 PRO D 50 -1 SHEET 3 S2D 6 VAL D 55 ILE D 63 -1 SHEET 4 S2D 6 LYS D 66 TYR D 75 -1 SHEET 5 S2D 6 LYS D 87 TYR D 94 -1 SHEET 6 S2D 6 VAL D 97 ASN D 104 -1 SSBOND 1 CYS A 9 CYS A 119 1555 1555 2.04 SSBOND 2 CYS A 43 CYS A 175 1555 1555 2.04 SSBOND 3 CYS B 9 CYS B 119 1555 1555 2.05 SSBOND 4 CYS B 43 CYS B 175 1555 1555 2.05 SSBOND 5 CYS C 9 CYS C 119 1555 1555 2.05 SSBOND 6 CYS C 43 CYS C 175 1555 1555 2.05 SSBOND 7 CYS D 9 CYS D 119 1555 1555 2.03 SSBOND 8 CYS D 43 CYS D 175 1555 1555 2.03 SITE 1 AC1 24 GLU A 29 VAL A 37 GLU A 38 TRP A 45 SITE 2 AC1 24 ALA A 46 ASN A 59 TYR A 60 HIS A 61 SITE 3 AC1 24 TYR A 68 PHE A 69 ILE A 70 LEU A 92 SITE 4 AC1 24 TYR A 94 ASN A 101 PHE A 103 TYR A 118 SITE 5 AC1 24 LYS A 120 PHE A 131 TRP A 133 LEU A 135 SITE 6 AC1 24 HOH A 532 HOH A 533 HOH A 544 HOH A 552 SITE 1 AC2 22 GLU B 29 VAL B 37 GLU B 38 TRP B 45 SITE 2 AC2 22 ALA B 46 ASN B 59 TYR B 60 HIS B 61 SITE 3 AC2 22 ILE B 70 HIS B 90 LEU B 92 TYR B 94 SITE 4 AC2 22 PHE B 103 TYR B 118 LYS B 120 PHE B 131 SITE 5 AC2 22 TRP B 133 LEU B 135 HOH B 522 HOH B 523 SITE 6 AC2 22 HOH B 548 HOH B 558 SITE 1 AC3 23 GLU C 29 VAL C 37 GLU C 38 TRP C 45 SITE 2 AC3 23 ALA C 46 ASN C 59 TYR C 60 HIS C 61 SITE 3 AC3 23 TYR C 68 ILE C 70 LEU C 92 TYR C 94 SITE 4 AC3 23 ASN C 101 PHE C 103 TYR C 118 LYS C 120 SITE 5 AC3 23 TRP C 133 LEU C 135 HOH C 526 HOH C 527 SITE 6 AC3 23 HOH C 561 HOH C 572 HOH C 602 SITE 1 AC4 24 GLU D 29 ASN D 35 VAL D 37 GLU D 38 SITE 2 AC4 24 TRP D 45 ALA D 46 ASN D 59 TYR D 60 SITE 3 AC4 24 HIS D 61 TYR D 68 ILE D 70 LEU D 92 SITE 4 AC4 24 TYR D 94 ASN D 101 PHE D 103 TYR D 118 SITE 5 AC4 24 LYS D 120 PHE D 131 TRP D 133 LEU D 135 SITE 6 AC4 24 HOH D 535 HOH D 541 HOH D 574 HOH D 582 CRYST1 132.100 121.900 63.800 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015674 0.00000 MTRIX1 1 -0.903400 0.122300 0.411000 41.58000 1 MTRIX2 1 -0.147200 -0.988700 -0.029300 73.07000 1 MTRIX3 1 0.402700 -0.087000 0.911200 4.48000 1 MTRIX1 2 0.290100 0.921400 -0.258400 4.44000 1 MTRIX2 2 0.918900 -0.343700 -0.193800 23.87000 1 MTRIX3 2 -0.267400 -0.181300 -0.946400 107.47000 1 MTRIX1 3 -0.270200 -0.944700 -0.186100 84.91000 1 MTRIX2 3 -0.946300 0.224900 0.232100 46.31000 1 MTRIX3 3 -0.177400 0.238800 -0.954700 101.68000 1 MTRIX1 4 -0.255300 -0.946200 -0.198800 85.07000 1 MTRIX2 4 -0.951900 0.209900 0.223300 47.11000 1 MTRIX3 4 -0.169500 0.246300 -0.954300 100.80000 1 MTRIX1 5 0.051800 0.979200 -0.196200 12.09000 1 MTRIX2 5 0.977800 -0.089700 -0.189300 13.05000 1 MTRIX3 5 -0.203000 -0.182000 -0.962100 127.72000 1 MTRIX1 6 -0.900800 0.112300 0.419400 41.15000 1 MTRIX2 6 -0.127000 -0.991900 -0.007200 71.32000 1 MTRIX3 6 0.415200 -0.059800 0.907800 3.71000 1