HEADER LIGASE 24-APR-98 1BBW TITLE LYSYL-TRNA SYNTHETASE (LYSS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (LYSYL-TRNA SYNTHETASE); COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 CELLULAR_LOCATION: CYTOPLASMIC; SOURCE 6 GENE: LYSS; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: PAL2103UKTR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXLYSKS1 KEYWDS LIGASE, AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.ONESTI,G.DESOGUS,A.BREVET,J.CHEN,P.PLATEAU,S.BLANQUET,P.BRICK REVDAT 5 09-AUG-23 1BBW 1 REMARK REVDAT 4 13-JUL-11 1BBW 1 VERSN REVDAT 3 24-FEB-09 1BBW 1 VERSN REVDAT 2 25-MAR-03 1BBW 1 REMARK CRYST1 SCALE1 SCALE2 REVDAT 2 2 1 MASTER REVDAT 1 10-NOV-00 1BBW 0 JRNL AUTH S.ONESTI,G.DESOGUS,A.BREVET,J.CHEN,P.PLATEAU,S.BLANQUET, JRNL AUTH 2 P.BRICK JRNL TITL STRUCTURAL STUDIES OF LYSYL-TRNA SYNTHETASE: CONFORMATIONAL JRNL TITL 2 CHANGES INDUCED BY SUBSTRATE BINDING. JRNL REF BIOCHEMISTRY V. 39 12853 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11041850 JRNL DOI 10.1021/BI001487R REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ONESTI,A.D.MILLER,P.BRICK REMARK 1 TITL CRYSTAL STRUCTURE OF THE LYSYL-TRNA SYNTHETASE (LYSU) FROM REMARK 1 TITL 2 ESCHERICHIA COLI REMARK 1 REF STRUCTURE V. 3 163 1995 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.BREVET,J.CHEN,F.LEVEQUE,S.BLANQUET,P.PLATEAU REMARK 1 TITL COMPARISON OF THE ENZYMATIC PROPERTIES OF TWO ESCHERICHIA REMARK 1 TITL 2 COLI LYSYL-TRNA SYNTHETASE SPECIES REMARK 1 REF J.BIOL.CHEM. V. 270 14439 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1211 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2927 REMARK 3 BIN R VALUE (WORKING SET) : 0.4510 REMARK 3 BIN FREE R VALUE : 0.4460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 146 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3638 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 114 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 15.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.500 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 9.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.400 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.300; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION APPLIED REMARK 4 REMARK 4 1BBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000008301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, CCP4 REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : 0.26000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 1LYL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.83867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.67733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.25800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.09667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.41933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.83867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.67733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.09667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.25800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.41933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 91.46800 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 158.42722 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.09667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 HIS A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 154 REMARK 465 LYS A 155 REMARK 465 PHE A 156 REMARK 465 HIS A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 159 REMARK 465 GLN A 160 REMARK 465 GLY A 215 REMARK 465 GLY A 216 REMARK 465 ALA A 217 REMARK 465 ARG A 269 REMARK 465 ALA A 444 REMARK 465 ALA A 445 REMARK 465 LYS A 446 REMARK 465 ASP A 447 REMARK 465 ALA A 448 REMARK 465 GLY A 449 REMARK 465 ASP A 450 REMARK 465 ASP A 451 REMARK 465 GLU A 452 REMARK 465 ALA A 453 REMARK 465 MET A 454 REMARK 465 PHE A 455 REMARK 465 VAL A 503 REMARK 465 LYS A 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 12 CG1 CG2 REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 ASN A 16 CG OD1 ND2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LEU A 60 CG CD1 CD2 REMARK 470 LEU A 63 CG CD1 CD2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LEU A 127 CG CD1 CD2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LEU A 135 CG CD1 CD2 REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 LEU A 231 CG CD1 CD2 REMARK 470 ARG A 262 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 266 CG1 CG2 CD1 REMARK 470 SER A 267 OG REMARK 470 VAL A 268 CG1 CG2 REMARK 470 LYS A 307 CD CE NZ REMARK 470 LYS A 321 CD CE NZ REMARK 470 LYS A 351 CG CD CE NZ REMARK 470 ILE A 353 CG1 CG2 CD1 REMARK 470 ILE A 357 CG1 CG2 CD1 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 LEU A 399 CG CD1 CD2 REMARK 470 LEU A 440 CG CD1 CD2 REMARK 470 VAL A 443 CG1 CG2 REMARK 470 ARG A 501 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 279 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 SER A 427 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 -150.21 -83.24 REMARK 500 ASP A 42 2.83 179.99 REMARK 500 ALA A 50 -8.92 -56.78 REMARK 500 ASN A 57 -47.86 -26.24 REMARK 500 ASP A 89 -151.31 -113.77 REMARK 500 GLN A 111 -77.76 -131.04 REMARK 500 LEU A 152 174.13 -57.90 REMARK 500 GLN A 162 37.87 -78.44 REMARK 500 GLN A 168 59.60 -141.66 REMARK 500 ARG A 169 -31.20 -39.83 REMARK 500 ARG A 200 36.94 -90.34 REMARK 500 PRO A 208 153.83 -49.53 REMARK 500 ALA A 228 10.98 -66.52 REMARK 500 LEU A 229 23.72 -152.60 REMARK 500 ASP A 230 27.19 18.65 REMARK 500 ALA A 238 145.21 -175.64 REMARK 500 GLU A 264 -146.54 -131.03 REMARK 500 HIS A 360 86.73 -68.41 REMARK 500 LEU A 367 -46.24 -27.28 REMARK 500 GLU A 391 71.20 54.68 REMARK 500 VAL A 396 5.48 -68.16 REMARK 500 PRO A 398 -122.31 -72.45 REMARK 500 LEU A 484 4.14 -65.99 REMARK 500 ASN A 487 -6.87 79.76 REMARK 500 LEU A 496 -34.39 -39.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BBU RELATED DB: PDB REMARK 900 1BBU CONTAINS THE SAME PROTEIN WITHOUT THE LYSINE LIGAND DBREF 1BBW A 1 504 UNP P0A8N3 SYK1_ECOLI 1 504 SEQRES 1 A 504 SER GLU GLN HIS ALA GLN GLY ALA ASP ALA VAL VAL ASP SEQRES 2 A 504 LEU ASN ASN GLU LEU LYS THR ARG ARG GLU LYS LEU ALA SEQRES 3 A 504 ASN LEU ARG GLU GLN GLY ILE ALA PHE PRO ASN ASP PHE SEQRES 4 A 504 ARG ARG ASP HIS THR SER ASP GLN LEU HIS ALA GLU PHE SEQRES 5 A 504 ASP GLY LYS GLU ASN GLU GLU LEU GLU ALA LEU ASN ILE SEQRES 6 A 504 GLU VAL ALA VAL ALA GLY ARG MET MET THR ARG ARG ILE SEQRES 7 A 504 MET GLY LYS ALA SER PHE VAL THR LEU GLN ASP VAL GLY SEQRES 8 A 504 GLY ARG ILE GLN LEU TYR VAL ALA ARG ASP ASP LEU PRO SEQRES 9 A 504 GLU GLY VAL TYR ASN GLU GLN PHE LYS LYS TRP ASP LEU SEQRES 10 A 504 GLY ASP ILE LEU GLY ALA LYS GLY LYS LEU PHE LYS THR SEQRES 11 A 504 LYS THR GLY GLU LEU SER ILE HIS CYS THR GLU LEU ARG SEQRES 12 A 504 LEU LEU THR LYS ALA LEU ARG PRO LEU PRO ASP LYS PHE SEQRES 13 A 504 HIS GLY LEU GLN ASP GLN GLU ALA ARG TYR ARG GLN ARG SEQRES 14 A 504 TYR LEU ASP LEU ILE SER ASN ASP GLU SER ARG ASN THR SEQRES 15 A 504 PHE LYS VAL ARG SER GLN ILE LEU SER GLY ILE ARG GLN SEQRES 16 A 504 PHE MET VAL ASN ARG GLY PHE MET GLU VAL GLU THR PRO SEQRES 17 A 504 MET MET GLN VAL ILE PRO GLY GLY ALA ALA ALA ARG PRO SEQRES 18 A 504 PHE ILE THR HIS HIS ASN ALA LEU ASP LEU ASP MET TYR SEQRES 19 A 504 LEU ARG ILE ALA PRO GLU LEU TYR LEU LYS ARG LEU VAL SEQRES 20 A 504 VAL GLY GLY PHE GLU ARG VAL PHE GLU ILE ASN ARG ASN SEQRES 21 A 504 PHE ARG ASN GLU GLY ILE SER VAL ARG HIS ASN PRO GLU SEQRES 22 A 504 PHE THR MET MET GLU LEU TYR MET ALA TYR ALA ASP TYR SEQRES 23 A 504 LYS ASP LEU ILE GLU LEU THR GLU SER LEU PHE ARG THR SEQRES 24 A 504 LEU ALA GLN ASP ILE LEU GLY LYS THR GLU VAL THR TYR SEQRES 25 A 504 GLY ASP VAL THR LEU ASP PHE GLY LYS PRO PHE GLU LYS SEQRES 26 A 504 LEU THR MET ARG GLU ALA ILE LYS LYS TYR ARG PRO GLU SEQRES 27 A 504 THR ASP MET ALA ASP LEU ASP ASN PHE ASP SER ALA LYS SEQRES 28 A 504 ALA ILE ALA GLU SER ILE GLY ILE HIS VAL GLU LYS SER SEQRES 29 A 504 TRP GLY LEU GLY ARG ILE VAL THR GLU ILE PHE GLU GLU SEQRES 30 A 504 VAL ALA GLU ALA HIS LEU ILE GLN PRO THR PHE ILE THR SEQRES 31 A 504 GLU TYR PRO ALA GLU VAL SER PRO LEU ALA ARG ARG ASN SEQRES 32 A 504 ASP VAL ASN PRO GLU ILE THR ASP ARG PHE GLU PHE PHE SEQRES 33 A 504 ILE GLY GLY ARG GLU ILE GLY ASN GLY PHE SER GLU LEU SEQRES 34 A 504 ASN ASP ALA GLU ASP GLN ALA GLN ARG PHE LEU ASP GLN SEQRES 35 A 504 VAL ALA ALA LYS ASP ALA GLY ASP ASP GLU ALA MET PHE SEQRES 36 A 504 TYR ASP GLU ASP TYR VAL THR ALA LEU GLU HIS GLY LEU SEQRES 37 A 504 PRO PRO THR ALA GLY LEU GLY ILE GLY ILE ASP ARG MET SEQRES 38 A 504 VAL MET LEU PHE THR ASN SER HIS THR ILE ARG ASP VAL SEQRES 39 A 504 ILE LEU PHE PRO ALA MET ARG PRO VAL LYS FORMUL 2 HOH *114(H2 O) HELIX 1 1 ASP A 13 GLN A 31 1 19 HELIX 2 2 SER A 45 PHE A 52 1 8 HELIX 3 3 ASN A 57 LEU A 63 1 7 HELIX 4 4 VAL A 107 GLU A 110 1 4 HELIX 5 5 PHE A 112 LYS A 114 5 3 HELIX 6 6 ALA A 164 ARG A 167 1 4 HELIX 7 7 ARG A 169 SER A 175 1 7 HELIX 8 8 ASP A 177 ARG A 200 1 24 HELIX 9 9 GLU A 240 VAL A 248 1 9 HELIX 10 10 TYR A 286 ILE A 304 1 19 HELIX 11 11 MET A 328 TYR A 335 1 8 HELIX 12 12 MET A 341 ASP A 345 5 5 HELIX 13 13 PHE A 347 ILE A 357 1 11 HELIX 14 14 LEU A 367 VAL A 378 1 12 HELIX 15 15 GLU A 380 HIS A 382 5 3 HELIX 16 16 ALA A 432 ASP A 441 1 10 HELIX 17 17 GLU A 458 HIS A 466 1 9 HELIX 18 18 ILE A 478 THR A 486 1 9 HELIX 19 19 ILE A 491 VAL A 494 5 4 SHEET 1 A 6 GLU A 66 ARG A 72 0 SHEET 2 A 6 ILE A 120 LYS A 129 -1 N GLY A 125 O VAL A 67 SHEET 3 A 6 LEU A 135 CYS A 139 -1 N HIS A 138 O LYS A 126 SHEET 4 A 6 ARG A 93 ALA A 99 1 N GLN A 95 O ILE A 137 SHEET 5 A 6 ALA A 82 GLN A 88 -1 N LEU A 87 O ILE A 94 SHEET 6 A 6 ARG A 72 MET A 79 -1 N MET A 79 O ALA A 82 SHEET 1 B 2 ILE A 223 HIS A 225 0 SHEET 2 B 2 ASP A 232 TYR A 234 -1 N MET A 233 O THR A 224 SHEET 1 C 7 ARG A 253 PHE A 261 0 SHEET 2 C 7 GLU A 273 ALA A 282 -1 N TYR A 280 O VAL A 254 SHEET 3 C 7 THR A 471 GLY A 477 -1 N ILE A 476 O MET A 277 SHEET 4 C 7 ARG A 420 SER A 427 -1 N PHE A 426 O GLY A 473 SHEET 5 C 7 ARG A 412 ILE A 417 -1 N ILE A 417 O ARG A 420 SHEET 6 C 7 THR A 387 THR A 390 -1 N ILE A 389 O GLU A 414 SHEET 7 C 7 GLU A 324 THR A 327 1 N GLU A 324 O PHE A 388 SHEET 1 D 2 GLU A 309 TYR A 312 0 SHEET 2 D 2 VAL A 315 ASP A 318 -1 N LEU A 317 O VAL A 310 SHEET 1 E 2 ILE A 120 LYS A 124 0 SHEET 2 E 2 GLU A 141 THR A 146 -1 N THR A 146 O ILE A 120 CRYST1 182.936 182.936 92.516 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005466 0.003156 0.000000 0.00000 SCALE2 0.000000 0.006312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010809 0.00000