data_1BDW # _entry.id 1BDW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BDW pdb_00001bdw 10.2210/pdb1bdw/pdb WWPDB D_1000171638 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1TK2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN S COMPLEXED WITH ALKALINE PROTEINASE SAVINASE' PDB 2XDC unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A FROM CRYSTALS GROWN IN A LIPID CUBIC PHASE.' PDB 1AV2 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1C4D unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLEXED WITH CESIUM CHLORIDE' PDB 1GMK unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN A COMPLRXED WITH POTASSIUM THIOCYANATE' PDB 1GRM unspecified 'SOLUTION STRUCTURE OF THE GRAMICIDIN A' PDB 1JNO unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN SODIUM DODECYL SULFATE MICELLES' PDB 1KQE unspecified 'SOLUTION STRUCTURE OF A LINKED SHORTENED GRAMICIDIN A IN BENZENE/ACETONE 10:1' PDB 1MAG unspecified 'SOLID STATE NMR STRUCTURE OF GRAMICIDIN A IN HYDRATED DMPC BILAYERS,' PDB 1MIC unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN METHANOL IN THE PRESENCE OF CACL' PDB 1NG8 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (W15G) IN SODIUM DODECYL SULFATE MICELLES' PDB 1NRM unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES' PDB 1NRU unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A IN DODECYL PHOSPHOCHOLINE MICELLES IN THE PRESENCE OF EXCESS NA+' PDB 1NT5 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN A (V1F) IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO3 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN B IN SODIUM DODECYL SULFATE MICELLES' PDB 1JO4 unspecified 'SOLUTION STRUCTURE OF GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1NT6 unspecified 'SOLUTION STRUCTURE OF F1-GRAMICIDIN C IN SODIUM DODECYL SULFATE MICELLES' PDB 1TKQ unspecified 'SOLUTION STRUCTURE OF A LINKED UNSYMMETRIC GRAMICIDIN A IN A MEMBRANE-ISOELECTRICAL SOLVENTS MIXTURE, IN THE PRESENCE OF CSCL' PDB 1W5U unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' PDB 2IZQ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH KI IN METHANOL' PDB 3L8L unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D COMPLEX WITH NAI' PDB 1AL4 unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN N-PROPANOL' PDB 1ALX unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN METHANOL' PDB 1ALZ unspecified 'CRYSTAL STRUCTURE OF GRAMICIDIN D IN ETHANOL' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BDW _pdbx_database_status.recvd_initial_deposition_date 1998-05-11 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Burkhart, B.M.' 1 'Pangborn, W.A.' 2 'Duax, W.L.' 3 # _citation.id primary _citation.title 'The Conducting Form of Gramicidin a is a Right-Handed Double-Stranded Double Helix.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 95 _citation.page_first 12950 _citation.page_last ? _citation.year 1998 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9789021 _citation.pdbx_database_id_DOI 10.1073/PNAS.95.22.12950 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Burkhart, B.M.' 1 ? primary 'Li, N.' 2 ? primary 'Langs, D.A.' 3 ? primary 'Pangborn, W.A.' 4 ? primary 'Duax, W.L.' 5 ? # _cell.entry_id 1BDW _cell.length_a 20.584 _cell.length_b 27.905 _cell.length_c 52.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BDW _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'GRAMICIDIN A' 1882.294 2 ? ? ? ? 2 non-polymer syn 'ACETIC ACID' 60.052 5 ? ? ? ? 3 water nat water 18.015 22 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VALYL GRAMICIDIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(FVA)GA(DLE)A(DVA)V(DVA)W(DLE)W(DLE)W(DLE)W(ETA)' _entity_poly.pdbx_seq_one_letter_code_can VGALAVVVWLWLWLWX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 FVA n 1 2 GLY n 1 3 ALA n 1 4 DLE n 1 5 ALA n 1 6 DVA n 1 7 VAL n 1 8 DVA n 1 9 TRP n 1 10 DLE n 1 11 TRP n 1 12 DLE n 1 13 TRP n 1 14 DLE n 1 15 TRP n 1 16 ETA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'BREVIBACILLUS BREVIS' _entity_src_nat.pdbx_ncbi_taxonomy_id 1393 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00243 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00243 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1BDW A 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 2 1 1BDW B 1 ? 16 ? NOR00243 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 ETA 'L-peptide COOH carboxy terminus' . ETHANOLAMINE ? 'C2 H7 N O' 61.083 FVA 'L-peptide linking' n N-formyl-L-valine ? 'C6 H11 N O3' 145.156 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1BDW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.65 _exptl_crystal.density_percent_sol 25.20 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 2.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'CRYSTALLIZED BY BATCH METHODS FROM A 30 MG/ML SOLUTION OF GRAMICIDIN D IN GLACIAL ACETIC ACID, PH 2.0, BATCH METHOD' # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date 1998-01 _diffrn_detector.details COLLIMATOR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1BDW _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.000 _reflns.d_resolution_high 1.700 _reflns.number_obs 11715 _reflns.number_all ? _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs 0.05000 _reflns.pdbx_Rsym_value 0.05000 _reflns.pdbx_netI_over_sigmaI 28.0000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 58.8 _reflns_shell.Rmerge_I_obs 0.12500 _reflns_shell.pdbx_Rsym_value 0.12500 _reflns_shell.meanI_over_sigI_obs 3.500 _reflns_shell.pdbx_redundancy 1.00 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1BDW _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 3416 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 100.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs 0.168 _refine.ls_R_factor_all 0.180 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 159 _refine.ls_number_parameters 1359 _refine.ls_number_restraints 1360 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER (G = 0.87873 U = 1.95930)' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1AV2' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case 'ETA BASED ON SERINE' _refine.pdbx_R_Free_selection_details '5% OF REFLECTIONS IN THIN RESOLUTION SHELLS.' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1BDW _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 7 _refine_analyze.occupancy_sum_hydrogen 292.00 _refine_analyze.occupancy_sum_non_hydrogen 316.00 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 272 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 314 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 100.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.237 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.045 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.054 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.043 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1BDW _pdbx_refine.R_factor_all_no_cutoff 0.180 _pdbx_refine.R_factor_obs_no_cutoff 0.168 _pdbx_refine.free_R_factor_no_cutoff 0.243 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.000 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 159 _pdbx_refine.R_factor_all_4sig_cutoff 0.169 _pdbx_refine.R_factor_obs_4sig_cutoff 0.157 _pdbx_refine.free_R_factor_4sig_cutoff 0.235 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.000 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 135 _pdbx_refine.number_reflns_obs_4sig_cutoff 2918 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.996995 _struct_ncs_oper.matrix[1][2] -0.076146 _struct_ncs_oper.matrix[1][3] -0.014227 _struct_ncs_oper.matrix[2][1] -0.075848 _struct_ncs_oper.matrix[2][2] 0.996910 _struct_ncs_oper.matrix[2][3] -0.020420 _struct_ncs_oper.matrix[3][1] 0.015738 _struct_ncs_oper.matrix[3][2] -0.019279 _struct_ncs_oper.matrix[3][3] -0.999690 _struct_ncs_oper.vector[1] 10.31142 _struct_ncs_oper.vector[2] 0.42646 _struct_ncs_oper.vector[3] 7.99587 # _struct.entry_id 1BDW _struct.title 'GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BDW _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'GRAMICIDIN, ANTIFUNGAL, ANTIBACTERIAL, ANTIBIOTIC, MEMBRANE ION CHANNEL, LINEAR GRAMICIDIN, DOUBLE HELIX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A FVA 1 C ? ? ? 1_555 A GLY 2 N ? ? A FVA 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A ALA 3 C ? ? ? 1_555 A DLE 4 N ? ? A ALA 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A DLE 4 C ? ? ? 1_555 A ALA 5 N ? ? A DLE 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale4 covale both ? A ALA 5 C ? ? ? 1_555 A DVA 6 N ? ? A ALA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale5 covale both ? A DVA 6 C ? ? ? 1_555 A VAL 7 N ? ? A DVA 6 A VAL 7 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale6 covale both ? A VAL 7 C ? ? ? 1_555 A DVA 8 N ? ? A VAL 7 A DVA 8 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A DVA 8 C ? ? ? 1_555 A TRP 9 N ? ? A DVA 8 A TRP 9 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? A TRP 9 C ? ? ? 1_555 A DLE 10 N ? ? A TRP 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale9 covale both ? A DLE 10 C ? ? ? 1_555 A TRP 11 N ? ? A DLE 10 A TRP 11 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale10 covale both ? A TRP 11 C ? ? ? 1_555 A DLE 12 N ? ? A TRP 11 A DLE 12 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A DLE 12 C ? ? ? 1_555 A TRP 13 N ? ? A DLE 12 A TRP 13 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale12 covale both ? A TRP 13 C ? ? ? 1_555 A DLE 14 N ? ? A TRP 13 A DLE 14 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? A DLE 14 C ? ? ? 1_555 A TRP 15 N ? ? A DLE 14 A TRP 15 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale14 covale both ? A TRP 15 C ? ? ? 1_555 A ETA 16 N ? ? A TRP 15 A ETA 16 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale15 covale both ? B FVA 1 C ? ? ? 1_555 B GLY 2 N ? ? B FVA 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? B ALA 3 C ? ? ? 1_555 B DLE 4 N ? ? B ALA 3 B DLE 4 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale17 covale both ? B DLE 4 C ? ? ? 1_555 B ALA 5 N ? ? B DLE 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale18 covale both ? B ALA 5 C ? ? ? 1_555 B DVA 6 N ? ? B ALA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale19 covale both ? B DVA 6 C ? ? ? 1_555 B VAL 7 N ? ? B DVA 6 B VAL 7 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale20 covale both ? B VAL 7 C ? ? ? 1_555 B DVA 8 N ? ? B VAL 7 B DVA 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale21 covale both ? B DVA 8 C ? ? ? 1_555 B TRP 9 N ? ? B DVA 8 B TRP 9 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale22 covale both ? B TRP 9 C ? ? ? 1_555 B DLE 10 N ? ? B TRP 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale23 covale both ? B DLE 10 C ? ? ? 1_555 B TRP 11 N ? ? B DLE 10 B TRP 11 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale24 covale both ? B TRP 11 C ? ? ? 1_555 B DLE 12 N ? ? B TRP 11 B DLE 12 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale25 covale both ? B DLE 12 C ? ? ? 1_555 B TRP 13 N ? ? B DLE 12 B TRP 13 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale26 covale both ? B TRP 13 C ? ? ? 1_555 B DLE 14 N ? ? B TRP 13 B DLE 14 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale27 covale both ? B DLE 14 C ? ? ? 1_555 B TRP 15 N ? ? B DLE 14 B TRP 15 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale28 covale both ? B TRP 15 C ? ? ? 1_555 B ETA 16 N ? ? B TRP 15 B ETA 16 1_555 ? ? ? ? ? ? ? 1.341 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 2 ? TRP A 15 ? GLY A 2 TRP A 15 AA 2 GLY B 2 ? TRP B 15 ? GLY B 2 TRP B 15 # _pdbx_struct_sheet_hbond.sheet_id AA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id DLE _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 14 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id DLE _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 14 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLY _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 2 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 2 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACY 201 ? 4 'BINDING SITE FOR RESIDUE ACY A 201' AC2 Software A ACY 205 ? 1 'BINDING SITE FOR RESIDUE ACY A 205' AC3 Software B ACY 202 ? 3 'BINDING SITE FOR RESIDUE ACY B 202' AC4 Software B ACY 203 ? 5 'BINDING SITE FOR RESIDUE ACY B 203' AC5 Software B ACY 206 ? 2 'BINDING SITE FOR RESIDUE ACY B 206' AC6 Software ? ? ? ? 30 'BINDING SITE FOR CHAIN A OF GRAMICIDIN A' AC7 Software ? ? ? ? 26 'BINDING SITE FOR CHAIN B OF GRAMICIDIN A' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DLE A 4 ? DLE A 4 . ? 1_555 ? 2 AC1 4 ALA A 5 ? ALA A 5 . ? 1_555 ? 3 AC1 4 ETA A 16 ? ETA A 16 . ? 2_555 ? 4 AC1 4 ETA B 16 ? ETA B 16 . ? 1_555 ? 5 AC2 1 TRP A 15 ? TRP A 15 . ? 1_555 ? 6 AC3 3 DLE B 4 ? DLE B 4 . ? 1_555 ? 7 AC3 3 ALA B 5 ? ALA B 5 . ? 1_555 ? 8 AC3 3 ACY F . ? ACY B 203 . ? 4_545 ? 9 AC4 5 TRP A 11 ? TRP A 11 . ? 1_555 ? 10 AC4 5 ALA B 5 ? ALA B 5 . ? 4_445 ? 11 AC4 5 DVA B 6 ? DVA B 6 . ? 4_445 ? 12 AC4 5 TRP B 11 ? TRP B 11 . ? 1_555 ? 13 AC4 5 ACY E . ? ACY B 202 . ? 4_445 ? 14 AC5 2 TRP B 15 ? TRP B 15 . ? 1_555 ? 15 AC5 2 ETA B 16 ? ETA B 16 . ? 1_555 ? 16 AC6 30 ACY C . ? ACY A 201 . ? 1_555 ? 17 AC6 30 ACY C . ? ACY A 201 . ? 2_554 ? 18 AC6 30 ACY D . ? ACY A 205 . ? 1_555 ? 19 AC6 30 HOH H . ? HOH A 2005 . ? 1_555 ? 20 AC6 30 HOH H . ? HOH A 2006 . ? 1_555 ? 21 AC6 30 HOH H . ? HOH A 2010 . ? 1_555 ? 22 AC6 30 HOH H . ? HOH A 2011 . ? 1_555 ? 23 AC6 30 HOH H . ? HOH A 2013 . ? 1_555 ? 24 AC6 30 GLY B 2 ? GLY B 2 . ? 2_555 ? 25 AC6 30 GLY B 2 ? GLY B 2 . ? 1_555 ? 26 AC6 30 ALA B 3 ? ALA B 3 . ? 1_555 ? 27 AC6 30 ALA B 3 ? ALA B 3 . ? 2_555 ? 28 AC6 30 DLE B 4 ? DLE B 4 . ? 1_555 ? 29 AC6 30 ALA B 5 ? ALA B 5 . ? 1_555 ? 30 AC6 30 DVA B 6 ? DVA B 6 . ? 1_555 ? 31 AC6 30 VAL B 7 ? VAL B 7 . ? 1_555 ? 32 AC6 30 DVA B 8 ? DVA B 8 . ? 1_555 ? 33 AC6 30 TRP B 9 ? TRP B 9 . ? 1_655 ? 34 AC6 30 TRP B 9 ? TRP B 9 . ? 1_555 ? 35 AC6 30 DLE B 10 ? DLE B 10 . ? 1_555 ? 36 AC6 30 TRP B 11 ? TRP B 11 . ? 1_555 ? 37 AC6 30 DLE B 12 ? DLE B 12 . ? 3_655 ? 38 AC6 30 DLE B 12 ? DLE B 12 . ? 1_555 ? 39 AC6 30 TRP B 13 ? TRP B 13 . ? 1_555 ? 40 AC6 30 DLE B 14 ? DLE B 14 . ? 1_555 ? 41 AC6 30 TRP B 15 ? TRP B 15 . ? 1_555 ? 42 AC6 30 TRP B 15 ? TRP B 15 . ? 3_645 ? 43 AC6 30 ETA B 16 ? ETA B 16 . ? 1_555 ? 44 AC6 30 ACY F . ? ACY B 203 . ? 1_555 ? 45 AC6 30 ACY G . ? ACY B 206 . ? 1_555 ? 46 AC7 26 GLY A 2 ? GLY A 2 . ? 2_554 ? 47 AC7 26 GLY A 2 ? GLY A 2 . ? 1_555 ? 48 AC7 26 ALA A 3 ? ALA A 3 . ? 2_554 ? 49 AC7 26 ALA A 3 ? ALA A 3 . ? 1_555 ? 50 AC7 26 ALA A 3 ? ALA A 3 . ? 3_655 ? 51 AC7 26 DLE A 4 ? DLE A 4 . ? 1_555 ? 52 AC7 26 ALA A 5 ? ALA A 5 . ? 1_555 ? 53 AC7 26 DVA A 6 ? DVA A 6 . ? 1_555 ? 54 AC7 26 VAL A 7 ? VAL A 7 . ? 1_555 ? 55 AC7 26 DVA A 8 ? DVA A 8 . ? 1_555 ? 56 AC7 26 TRP A 9 ? TRP A 9 . ? 1_455 ? 57 AC7 26 TRP A 9 ? TRP A 9 . ? 1_555 ? 58 AC7 26 DLE A 10 ? DLE A 10 . ? 1_555 ? 59 AC7 26 TRP A 11 ? TRP A 11 . ? 1_555 ? 60 AC7 26 DLE A 12 ? DLE A 12 . ? 1_555 ? 61 AC7 26 TRP A 13 ? TRP A 13 . ? 1_555 ? 62 AC7 26 DLE A 14 ? DLE A 14 . ? 1_555 ? 63 AC7 26 TRP A 15 ? TRP A 15 . ? 1_555 ? 64 AC7 26 ETA A 16 ? ETA A 16 . ? 1_555 ? 65 AC7 26 ACY C . ? ACY A 201 . ? 1_555 ? 66 AC7 26 HOH H . ? HOH A 2011 . ? 1_555 ? 67 AC7 26 ACY E . ? ACY B 202 . ? 1_555 ? 68 AC7 26 ACY F . ? ACY B 203 . ? 1_555 ? 69 AC7 26 ACY F . ? ACY B 203 . ? 4_545 ? 70 AC7 26 ACY G . ? ACY B 206 . ? 1_555 ? 71 AC7 26 HOH I . ? HOH B 2006 . ? 1_555 ? # _database_PDB_matrix.entry_id 1BDW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1BDW _atom_sites.fract_transf_matrix[1][1] 0.048581 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035836 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019216 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 FVA 1 1 1 FVA FVA A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DLE 4 4 4 DLE DLE A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 DVA 6 6 6 DVA DVA A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 DVA 8 8 8 DVA DVA A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 DLE 10 10 10 DLE DLE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 DLE 12 12 12 DLE DLE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 DLE 14 14 14 DLE DLE A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ETA 16 16 16 ETA ETA A . n B 1 1 FVA 1 1 1 FVA FVA B . n B 1 2 GLY 2 2 2 GLY GLY B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 DLE 4 4 4 DLE DLE B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 DVA 6 6 6 DVA DVA B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 DVA 8 8 8 DVA DVA B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 DLE 10 10 10 DLE DLE B . n B 1 11 TRP 11 11 11 TRP TRP B . n B 1 12 DLE 12 12 12 DLE DLE B . n B 1 13 TRP 13 13 13 TRP TRP B . n B 1 14 DLE 14 14 14 DLE DLE B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 ETA 16 16 16 ETA ETA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY 1 201 201 ACY ACY A . D 2 ACY 1 205 205 ACY ACY A . E 2 ACY 1 202 202 ACY ACY B . F 2 ACY 1 203 203 ACY ACY B . G 2 ACY 1 206 206 ACY ACY B . H 3 HOH 1 2001 2001 HOH HOH A . H 3 HOH 2 2002 2002 HOH HOH A . H 3 HOH 3 2003 2003 HOH HOH A . H 3 HOH 4 2004 2004 HOH HOH A . H 3 HOH 5 2005 2005 HOH HOH A . H 3 HOH 6 2006 2006 HOH HOH A . H 3 HOH 7 2007 2007 HOH HOH A . H 3 HOH 8 2008 2008 HOH HOH A . H 3 HOH 9 2009 2009 HOH HOH A . H 3 HOH 10 2010 2010 HOH HOH A . H 3 HOH 11 2011 2011 HOH HOH A . H 3 HOH 12 2012 2012 HOH HOH A . H 3 HOH 13 2013 2013 HOH HOH A . I 3 HOH 1 2001 2001 HOH HOH B . I 3 HOH 2 2002 2002 HOH HOH B . I 3 HOH 3 2003 2003 HOH HOH B . I 3 HOH 4 2004 2004 HOH HOH B . I 3 HOH 5 2005 2005 HOH HOH B . I 3 HOH 6 2006 2006 HOH HOH B . I 3 HOH 7 2007 2007 HOH HOH B . I 3 HOH 8 2008 2008 HOH HOH B . I 3 HOH 9 2009 2009 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000150 _pdbx_molecule_features.name 'GRAMICIDIN A' _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;GRAMICIDIN A IS A HEXADECAMERIC HELICAL PEPTIDE WITH ALTERNATING D,L CHARACTERISTICS. THE N-TERM IS FORMYLATED (RESIDUE 0). THE C-TERM IS CAPPED WITH ETHANOLAMINE (RESIDUE 16). ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000150 A 2 PRD_000150 B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3000 ? 1 MORE -15.0 ? 1 'SSA (A^2)' 2490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-10-14 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2023-08-02 7 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Derived calculations' 11 6 'Structure model' 'Refinement description' 12 7 'Structure model' 'Atomic model' 13 7 'Structure model' 'Data collection' 14 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' database_2 2 6 'Structure model' pdbx_initial_refinement_model 3 6 'Structure model' struct_conn 4 6 'Structure model' struct_site 5 7 'Structure model' atom_site 6 7 'Structure model' chem_comp_atom 7 7 'Structure model' chem_comp_bond 8 7 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_database_2.pdbx_DOI' 2 6 'Structure model' '_database_2.pdbx_database_accession' 3 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 6 'Structure model' '_struct_site.pdbx_auth_seq_id' 7 7 'Structure model' '_atom_site.auth_atom_id' 8 7 'Structure model' '_atom_site.label_atom_id' 9 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 1BDW _pdbx_entry_details.compound_details ;GRAMICIDIN IS A HETEROGENEOUS MIXTURE OF SEVERAL COMPOUNDS INCLUDING GRAMICIDIN A, B AND C WHICH ARE OBTAINED FROM BACILLUS BREVIS AND CALLED COLLECTIVELY GRAMICIDIN D HERE, GRAMICIDIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 FVA _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OXT _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ACY _pdbx_validate_close_contact.auth_seq_id_2 206 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ALA N N N N 9 ALA CA C N S 10 ALA C C N N 11 ALA O O N N 12 ALA CB C N N 13 ALA OXT O N N 14 ALA H H N N 15 ALA H2 H N N 16 ALA HA H N N 17 ALA HB1 H N N 18 ALA HB2 H N N 19 ALA HB3 H N N 20 ALA HXT H N N 21 DLE N N N N 22 DLE CA C N R 23 DLE CB C N N 24 DLE CG C N N 25 DLE CD1 C N N 26 DLE CD2 C N N 27 DLE C C N N 28 DLE O O N N 29 DLE OXT O N N 30 DLE H H N N 31 DLE H2 H N N 32 DLE HA H N N 33 DLE HB2 H N N 34 DLE HB3 H N N 35 DLE HG H N N 36 DLE HD11 H N N 37 DLE HD12 H N N 38 DLE HD13 H N N 39 DLE HD21 H N N 40 DLE HD22 H N N 41 DLE HD23 H N N 42 DLE HXT H N N 43 DVA N N N N 44 DVA CA C N R 45 DVA CB C N N 46 DVA CG1 C N N 47 DVA CG2 C N N 48 DVA C C N N 49 DVA O O N N 50 DVA OXT O N N 51 DVA H H N N 52 DVA H2 H N N 53 DVA HA H N N 54 DVA HB H N N 55 DVA HG11 H N N 56 DVA HG12 H N N 57 DVA HG13 H N N 58 DVA HG21 H N N 59 DVA HG22 H N N 60 DVA HG23 H N N 61 DVA HXT H N N 62 ETA CA C N N 63 ETA N N N N 64 ETA C C N N 65 ETA O O N N 66 ETA HA1 H N N 67 ETA HA2 H N N 68 ETA H H N N 69 ETA H2 H N N 70 ETA HB1 H N N 71 ETA HB2 H N N 72 ETA HO H N N 73 FVA C C N N 74 FVA N N N N 75 FVA O O N N 76 FVA CA C N S 77 FVA CB C N N 78 FVA CG1 C N N 79 FVA CG2 C N N 80 FVA H H N N 81 FVA HA H N N 82 FVA HB H N N 83 FVA HG11 H N N 84 FVA HG12 H N N 85 FVA HG13 H N N 86 FVA HG21 H N N 87 FVA HG22 H N N 88 FVA HG23 H N N 89 FVA O1 O N N 90 FVA CN C N N 91 FVA HN H N N 92 FVA OXT O N N 93 FVA HXT H N N 94 GLY N N N N 95 GLY CA C N N 96 GLY C C N N 97 GLY O O N N 98 GLY OXT O N N 99 GLY H H N N 100 GLY H2 H N N 101 GLY HA2 H N N 102 GLY HA3 H N N 103 GLY HXT H N N 104 HOH O O N N 105 HOH H1 H N N 106 HOH H2 H N N 107 TRP N N N N 108 TRP CA C N S 109 TRP C C N N 110 TRP O O N N 111 TRP CB C N N 112 TRP CG C Y N 113 TRP CD1 C Y N 114 TRP CD2 C Y N 115 TRP NE1 N Y N 116 TRP CE2 C Y N 117 TRP CE3 C Y N 118 TRP CZ2 C Y N 119 TRP CZ3 C Y N 120 TRP CH2 C Y N 121 TRP OXT O N N 122 TRP H H N N 123 TRP H2 H N N 124 TRP HA H N N 125 TRP HB2 H N N 126 TRP HB3 H N N 127 TRP HD1 H N N 128 TRP HE1 H N N 129 TRP HE3 H N N 130 TRP HZ2 H N N 131 TRP HZ3 H N N 132 TRP HH2 H N N 133 TRP HXT H N N 134 VAL N N N N 135 VAL CA C N S 136 VAL C C N N 137 VAL O O N N 138 VAL CB C N N 139 VAL CG1 C N N 140 VAL CG2 C N N 141 VAL OXT O N N 142 VAL H H N N 143 VAL H2 H N N 144 VAL HA H N N 145 VAL HB H N N 146 VAL HG11 H N N 147 VAL HG12 H N N 148 VAL HG13 H N N 149 VAL HG21 H N N 150 VAL HG22 H N N 151 VAL HG23 H N N 152 VAL HXT H N N 153 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ALA N CA sing N N 8 ALA N H sing N N 9 ALA N H2 sing N N 10 ALA CA C sing N N 11 ALA CA CB sing N N 12 ALA CA HA sing N N 13 ALA C O doub N N 14 ALA C OXT sing N N 15 ALA CB HB1 sing N N 16 ALA CB HB2 sing N N 17 ALA CB HB3 sing N N 18 ALA OXT HXT sing N N 19 DLE N CA sing N N 20 DLE N H sing N N 21 DLE N H2 sing N N 22 DLE CA CB sing N N 23 DLE CA C sing N N 24 DLE CA HA sing N N 25 DLE CB CG sing N N 26 DLE CB HB2 sing N N 27 DLE CB HB3 sing N N 28 DLE CG CD1 sing N N 29 DLE CG CD2 sing N N 30 DLE CG HG sing N N 31 DLE CD1 HD11 sing N N 32 DLE CD1 HD12 sing N N 33 DLE CD1 HD13 sing N N 34 DLE CD2 HD21 sing N N 35 DLE CD2 HD22 sing N N 36 DLE CD2 HD23 sing N N 37 DLE C O doub N N 38 DLE C OXT sing N N 39 DLE OXT HXT sing N N 40 DVA N CA sing N N 41 DVA N H sing N N 42 DVA N H2 sing N N 43 DVA CA CB sing N N 44 DVA CA C sing N N 45 DVA CA HA sing N N 46 DVA CB CG1 sing N N 47 DVA CB CG2 sing N N 48 DVA CB HB sing N N 49 DVA CG1 HG11 sing N N 50 DVA CG1 HG12 sing N N 51 DVA CG1 HG13 sing N N 52 DVA CG2 HG21 sing N N 53 DVA CG2 HG22 sing N N 54 DVA CG2 HG23 sing N N 55 DVA C O doub N N 56 DVA C OXT sing N N 57 DVA OXT HXT sing N N 58 ETA CA N sing N N 59 ETA CA C sing N N 60 ETA CA HA1 sing N N 61 ETA CA HA2 sing N N 62 ETA N H sing N N 63 ETA N H2 sing N N 64 ETA C O sing N N 65 ETA C HB1 sing N N 66 ETA C HB2 sing N N 67 ETA O HO sing N N 68 FVA O C doub N N 69 FVA C CA sing N N 70 FVA H N sing N N 71 FVA N CN sing N N 72 FVA N CA sing N N 73 FVA CB CA sing N N 74 FVA CA HA sing N N 75 FVA HB CB sing N N 76 FVA CB CG2 sing N N 77 FVA CB CG1 sing N N 78 FVA HG13 CG1 sing N N 79 FVA HG12 CG1 sing N N 80 FVA CG1 HG11 sing N N 81 FVA HG22 CG2 sing N N 82 FVA HG23 CG2 sing N N 83 FVA CG2 HG21 sing N N 84 FVA CN O1 doub N N 85 FVA HN CN sing N N 86 FVA C OXT sing N N 87 FVA OXT HXT sing N N 88 GLY N CA sing N N 89 GLY N H sing N N 90 GLY N H2 sing N N 91 GLY CA C sing N N 92 GLY CA HA2 sing N N 93 GLY CA HA3 sing N N 94 GLY C O doub N N 95 GLY C OXT sing N N 96 GLY OXT HXT sing N N 97 HOH O H1 sing N N 98 HOH O H2 sing N N 99 TRP N CA sing N N 100 TRP N H sing N N 101 TRP N H2 sing N N 102 TRP CA C sing N N 103 TRP CA CB sing N N 104 TRP CA HA sing N N 105 TRP C O doub N N 106 TRP C OXT sing N N 107 TRP CB CG sing N N 108 TRP CB HB2 sing N N 109 TRP CB HB3 sing N N 110 TRP CG CD1 doub Y N 111 TRP CG CD2 sing Y N 112 TRP CD1 NE1 sing Y N 113 TRP CD1 HD1 sing N N 114 TRP CD2 CE2 doub Y N 115 TRP CD2 CE3 sing Y N 116 TRP NE1 CE2 sing Y N 117 TRP NE1 HE1 sing N N 118 TRP CE2 CZ2 sing Y N 119 TRP CE3 CZ3 doub Y N 120 TRP CE3 HE3 sing N N 121 TRP CZ2 CH2 doub Y N 122 TRP CZ2 HZ2 sing N N 123 TRP CZ3 CH2 sing Y N 124 TRP CZ3 HZ3 sing N N 125 TRP CH2 HH2 sing N N 126 TRP OXT HXT sing N N 127 VAL N CA sing N N 128 VAL N H sing N N 129 VAL N H2 sing N N 130 VAL CA C sing N N 131 VAL CA CB sing N N 132 VAL CA HA sing N N 133 VAL C O doub N N 134 VAL C OXT sing N N 135 VAL CB CG1 sing N N 136 VAL CB CG2 sing N N 137 VAL CB HB sing N N 138 VAL CG1 HG11 sing N N 139 VAL CG1 HG12 sing N N 140 VAL CG1 HG13 sing N N 141 VAL CG2 HG21 sing N N 142 VAL CG2 HG22 sing N N 143 VAL CG2 HG23 sing N N 144 VAL OXT HXT sing N N 145 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AV2 _pdbx_initial_refinement_model.details 'PDB ENTRY 1AV2' #