HEADER PHOSPHOTRANSFERASE 19-MAY-98 1BE4 TITLE NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM B FROM BOVINE RETINA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE TRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.7.4.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: EYE; SOURCE 6 TISSUE: RETINA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.LADNER,N.G.ABDULAEV,D.L.KAKUEV,G.N.KARASCHUK,M.TORDOVA, AUTHOR 2 E.EISENSTEIN,J.H.FUJIWARA,K.D.RIDGE,G.L.GILLILAND REVDAT 5 02-AUG-23 1BE4 1 REMARK REVDAT 4 07-MAR-18 1BE4 1 REMARK REVDAT 3 13-JUL-11 1BE4 1 VERSN REVDAT 2 24-FEB-09 1BE4 1 VERSN REVDAT 1 13-JAN-99 1BE4 0 JRNL AUTH N.G.ABDULAEV,G.N.KARASCHUK,J.E.LADNER,D.L.KAKUEV, JRNL AUTH 2 A.V.YAKHYAEV,M.TORDOVA,I.O.GAIDAROV,V.I.POPOV,J.H.FUJIWARA, JRNL AUTH 3 D.CHINCHILLA,E.EISENSTEIN,G.L.GILLILAND,K.D.RIDGE JRNL TITL NUCLEOSIDE DIPHOSPHATE KINASE FROM BOVINE RETINA: JRNL TITL 2 PURIFICATION, SUBCELLULAR LOCALIZATION, MOLECULAR CLONING, JRNL TITL 3 AND THREE-DIMENSIONAL STRUCTURE. JRNL REF BIOCHEMISTRY V. 37 13958 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9760230 JRNL DOI 10.1021/BI980853S REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 26318 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1980 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 26318 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.024 ; 1.500 ; 3777 REMARK 3 BOND ANGLES (DEGREES) : 5.530 ; 1.300 ; 5070 REMARK 3 TORSION ANGLES (DEGREES) : 19.862; 0.000 ; 2256 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.024 ; 1.800 ; 93 REMARK 3 GENERAL PLANES (A) : 0.026 ; 5.800 ; 537 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 11.274; 1.000 ; 3699 REMARK 3 NON-BONDED CONTACTS (A) : 0.062 ; 10.000; 162 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.81 REMARK 3 BSOL : 283.9 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT BCORREL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: X-PLOR SIMULATED ANNEALING, SLOW REMARK 3 COOLING, POSITIONAL AND B-FACTOR REFINEMENT WAS USED WITH 10% OF REMARK 3 THE DATA RESERVED FOR R-FREE. R-FREE WENT FROM 0.398 - 0.366 REMARK 3 WHILE THE WORKING R WENT TO 0.259. THEN TNT WAS USED FOR THE REMARK 3 FINAL REFINEMENT WITHOUT R-FREE. REMARK 4 REMARK 4 1BE4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : SIEMENS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NSK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.09000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.30500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.13500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.30500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.04500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.30500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.30500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.13500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.30500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.30500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.04500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.09000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 128.61000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 128.61000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 44.09000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 27 OD2 ASP A 107 2.13 REMARK 500 O GLU C 50 NZ LYS C 128 2.15 REMARK 500 NH1 ARG A 88 O GLY A 119 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 5 CD GLU A 5 OE2 0.077 REMARK 500 GLU A 23 CD GLU A 23 OE2 0.103 REMARK 500 GLU A 29 CD GLU A 29 OE2 0.086 REMARK 500 GLU A 79 CD GLU A 79 OE1 0.073 REMARK 500 GLU A 124 CD GLU A 124 OE2 0.093 REMARK 500 GLN A 147 C ASN A 148 N 0.161 REMARK 500 GLU B 23 CD GLU B 23 OE2 0.089 REMARK 500 GLU B 45 CD GLU B 45 OE2 0.085 REMARK 500 GLU B 50 CD GLU B 50 OE1 0.066 REMARK 500 GLU B 93 CD GLU B 93 OE2 0.079 REMARK 500 GLU B 124 CD GLU B 124 OE2 0.071 REMARK 500 GLU B 127 CD GLU B 127 OE2 0.093 REMARK 500 GLU B 137 CD GLU B 137 OE1 0.101 REMARK 500 GLU B 138 CD GLU B 138 OE2 0.088 REMARK 500 GLU C 5 CD GLU C 5 OE2 0.085 REMARK 500 GLU C 23 CD GLU C 23 OE2 0.070 REMARK 500 GLU C 29 CD GLU C 29 OE2 0.100 REMARK 500 GLU C 50 CD GLU C 50 OE2 0.103 REMARK 500 GLU C 79 CD GLU C 79 OE2 0.094 REMARK 500 GLU C 93 CD GLU C 93 OE2 0.079 REMARK 500 GLU C 124 CD GLU C 124 OE1 0.087 REMARK 500 GLU C 127 CD GLU C 127 OE2 0.082 REMARK 500 GLU C 137 CD GLU C 137 OE2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 3 CA - CB - CG ANGL. DEV. = -21.2 DEGREES REMARK 500 ARG A 6 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 6 CA - CB - CG ANGL. DEV. = -19.6 DEGREES REMARK 500 ARG A 6 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 PHE A 8 CD1 - CE1 - CZ ANGL. DEV. = -11.3 DEGREES REMARK 500 PHE A 8 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 ILE A 9 CA - CB - CG1 ANGL. DEV. = -12.7 DEGREES REMARK 500 ALA A 10 CB - CA - C ANGL. DEV. = -11.3 DEGREES REMARK 500 ALA A 10 N - CA - CB ANGL. DEV. = 9.3 DEGREES REMARK 500 VAL A 16 CA - CB - CG1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 18 NH1 - CZ - NH2 ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 18 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 MET A 21 CG - SD - CE ANGL. DEV. = 16.3 DEGREES REMARK 500 GLY A 22 CA - C - O ANGL. DEV. = 11.9 DEGREES REMARK 500 GLY A 22 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 27 CD - NE - CZ ANGL. DEV. = -15.5 DEGREES REMARK 500 ARG A 27 NH1 - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 PHE A 28 O - C - N ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU A 29 N - CA - CB ANGL. DEV. = -14.0 DEGREES REMARK 500 LYS A 31 CA - CB - CG ANGL. DEV. = -18.1 DEGREES REMARK 500 LYS A 31 O - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 LEU A 35 N - CA - CB ANGL. DEV. = 12.6 DEGREES REMARK 500 MET A 38 CG - SD - CE ANGL. DEV. = 12.6 DEGREES REMARK 500 MET A 41 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 MET A 41 CG - SD - CE ANGL. DEV. = -16.2 DEGREES REMARK 500 ARG A 42 N - CA - CB ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 SER A 44 N - CA - CB ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 45 OE1 - CD - OE2 ANGL. DEV. = -12.9 DEGREES REMARK 500 LYS A 49 N - CA - CB ANGL. DEV. = -10.8 DEGREES REMARK 500 TYR A 52 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 TYR A 52 CB - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TYR A 52 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 54 CA - CB - CG ANGL. DEV. = -17.2 DEGREES REMARK 500 ASP A 54 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 57 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE A 61 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 PHE A 61 CB - CG - CD2 ANGL. DEV. = 9.7 DEGREES REMARK 500 PHE A 61 CG - CD1 - CE1 ANGL. DEV. = 7.3 DEGREES REMARK 500 LEU A 64 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 VAL A 65 CA - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 LYS A 66 CA - CB - CG ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 272 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 56 -9.02 -52.96 REMARK 500 ARG A 58 156.55 -34.53 REMARK 500 PRO A 59 -80.52 -45.89 REMARK 500 PHE A 60 -25.73 -30.12 REMARK 500 PHE A 61 -108.64 -16.95 REMARK 500 ALA A 62 5.45 -60.54 REMARK 500 MET A 68 -19.43 -41.37 REMARK 500 ILE A 116 -28.45 52.12 REMARK 500 PRO B 13 -36.47 -39.40 REMARK 500 VAL B 36 -63.45 -94.65 REMARK 500 MET B 38 118.34 176.24 REMARK 500 ASP B 54 -83.85 -42.37 REMARK 500 LEU B 55 55.39 -57.51 REMARK 500 LYS B 56 -78.91 -90.58 REMARK 500 ASP B 57 57.45 -66.71 REMARK 500 PRO B 59 -93.84 12.92 REMARK 500 PHE B 60 -76.20 -22.74 REMARK 500 PHE B 61 -91.73 4.90 REMARK 500 ALA B 62 -87.84 1.72 REMARK 500 SER B 70 -0.85 -59.32 REMARK 500 LEU B 91 -73.29 -62.29 REMARK 500 ILE B 110 -46.02 -142.40 REMARK 500 ILE B 116 -1.58 54.47 REMARK 500 ILE B 117 166.03 178.90 REMARK 500 SER B 122 147.94 146.42 REMARK 500 VAL B 123 -65.41 -26.32 REMARK 500 ALA B 146 57.78 -164.27 REMARK 500 MET C 38 142.42 -178.42 REMARK 500 TYR C 52 33.01 -86.49 REMARK 500 ASP C 57 78.37 -108.78 REMARK 500 PHE C 61 -40.96 -28.58 REMARK 500 LEU C 64 -71.97 -49.91 REMARK 500 MET C 68 -6.48 -57.83 REMARK 500 ASN C 82 37.94 33.23 REMARK 500 ILE C 116 -3.81 33.19 REMARK 500 GLN C 147 -67.50 -24.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN B 3 0.07 SIDE CHAIN REMARK 500 TYR B 151 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 148 -16.45 REMARK 500 SER B 99 -10.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: NUL REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: C-GMP BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG B 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PCG C 160 DBREF 1BE4 A 2 152 UNP P52175 NDKB_BOVIN 1 151 DBREF 1BE4 B 2 152 UNP P52175 NDKB_BOVIN 1 151 DBREF 1BE4 C 2 152 UNP P52175 NDKB_BOVIN 1 151 SEQRES 1 A 151 ALA ASN SER GLU ARG THR PHE ILE ALA ILE LYS PRO ASP SEQRES 2 A 151 GLY VAL GLN ARG GLY LEU MET GLY GLU ILE ILE LYS ARG SEQRES 3 A 151 PHE GLU GLN LYS GLY PHE ARG LEU VAL ALA MET LYS PHE SEQRES 4 A 151 MET ARG ALA SER GLU ASP LEU LEU LYS GLU HIS TYR ILE SEQRES 5 A 151 ASP LEU LYS ASP ARG PRO PHE PHE ALA GLY LEU VAL LYS SEQRES 6 A 151 TYR MET HIS SER GLY PRO VAL VAL ALA MET VAL TRP GLU SEQRES 7 A 151 GLY LEU ASN VAL VAL LYS THR GLY ARG VAL MET LEU GLY SEQRES 8 A 151 GLU THR ASN PRO ALA ASP SER LYS PRO GLY THR ILE ARG SEQRES 9 A 151 GLY ASP PHE CYS ILE GLN VAL GLY ARG ASN ILE ILE HIS SEQRES 10 A 151 GLY SER ASP SER VAL GLU SER ALA GLU LYS GLU ILE ALA SEQRES 11 A 151 LEU TRP PHE ARG PRO GLU GLU LEU VAL ASN TYR LYS SER SEQRES 12 A 151 CYS ALA GLN ASN TRP ILE TYR GLU SEQRES 1 B 151 ALA ASN SER GLU ARG THR PHE ILE ALA ILE LYS PRO ASP SEQRES 2 B 151 GLY VAL GLN ARG GLY LEU MET GLY GLU ILE ILE LYS ARG SEQRES 3 B 151 PHE GLU GLN LYS GLY PHE ARG LEU VAL ALA MET LYS PHE SEQRES 4 B 151 MET ARG ALA SER GLU ASP LEU LEU LYS GLU HIS TYR ILE SEQRES 5 B 151 ASP LEU LYS ASP ARG PRO PHE PHE ALA GLY LEU VAL LYS SEQRES 6 B 151 TYR MET HIS SER GLY PRO VAL VAL ALA MET VAL TRP GLU SEQRES 7 B 151 GLY LEU ASN VAL VAL LYS THR GLY ARG VAL MET LEU GLY SEQRES 8 B 151 GLU THR ASN PRO ALA ASP SER LYS PRO GLY THR ILE ARG SEQRES 9 B 151 GLY ASP PHE CYS ILE GLN VAL GLY ARG ASN ILE ILE HIS SEQRES 10 B 151 GLY SER ASP SER VAL GLU SER ALA GLU LYS GLU ILE ALA SEQRES 11 B 151 LEU TRP PHE ARG PRO GLU GLU LEU VAL ASN TYR LYS SER SEQRES 12 B 151 CYS ALA GLN ASN TRP ILE TYR GLU SEQRES 1 C 151 ALA ASN SER GLU ARG THR PHE ILE ALA ILE LYS PRO ASP SEQRES 2 C 151 GLY VAL GLN ARG GLY LEU MET GLY GLU ILE ILE LYS ARG SEQRES 3 C 151 PHE GLU GLN LYS GLY PHE ARG LEU VAL ALA MET LYS PHE SEQRES 4 C 151 MET ARG ALA SER GLU ASP LEU LEU LYS GLU HIS TYR ILE SEQRES 5 C 151 ASP LEU LYS ASP ARG PRO PHE PHE ALA GLY LEU VAL LYS SEQRES 6 C 151 TYR MET HIS SER GLY PRO VAL VAL ALA MET VAL TRP GLU SEQRES 7 C 151 GLY LEU ASN VAL VAL LYS THR GLY ARG VAL MET LEU GLY SEQRES 8 C 151 GLU THR ASN PRO ALA ASP SER LYS PRO GLY THR ILE ARG SEQRES 9 C 151 GLY ASP PHE CYS ILE GLN VAL GLY ARG ASN ILE ILE HIS SEQRES 10 C 151 GLY SER ASP SER VAL GLU SER ALA GLU LYS GLU ILE ALA SEQRES 11 C 151 LEU TRP PHE ARG PRO GLU GLU LEU VAL ASN TYR LYS SER SEQRES 12 C 151 CYS ALA GLN ASN TRP ILE TYR GLU HET PCG A 160 23 HET PCG B 160 23 HET PCG C 160 23 HETNAM PCG CYCLIC GUANOSINE MONOPHOSPHATE FORMUL 4 PCG 3(C10 H12 N5 O7 P) FORMUL 7 HOH *278(H2 O) HELIX 1 1 PRO A 13 GLN A 17 1 5 HELIX 2 2 MET A 21 LYS A 31 1 11 HELIX 3 3 GLU A 45 LEU A 55 1 11 HELIX 4 4 PHE A 61 HIS A 69 5 9 HELIX 5 5 VAL A 83 LEU A 91 1 9 HELIX 6 6 PRO A 96 ASP A 98 5 3 HELIX 7 7 ILE A 104 PHE A 108 1 5 HELIX 8 8 VAL A 123 TRP A 133 1 11 HELIX 9 9 PRO A 136 GLU A 138 5 3 HELIX 10 10 GLN A 147 ILE A 150 1 4 HELIX 11 11 PRO B 13 ARG B 18 1 6 HELIX 12 12 MET B 21 LYS B 31 1 11 HELIX 13 13 GLU B 45 HIS B 51 1 7 HELIX 14 14 ASP B 54 LYS B 56 5 3 HELIX 15 15 PRO B 59 MET B 68 5 10 HELIX 16 16 VAL B 83 LEU B 91 1 9 HELIX 17 17 PRO B 96 ASP B 98 5 3 HELIX 18 18 ILE B 104 PHE B 108 1 5 HELIX 19 19 VAL B 112 ARG B 114 5 3 HELIX 20 20 VAL B 123 TRP B 133 1 11 HELIX 21 21 GLN B 147 TRP B 149 5 3 HELIX 22 22 PRO C 13 ARG C 18 1 6 HELIX 23 23 MET C 21 LYS C 31 1 11 HELIX 24 24 GLU C 45 HIS C 51 1 7 HELIX 25 25 ILE C 53 LEU C 55 5 3 HELIX 26 26 PHE C 60 HIS C 69 5 10 HELIX 27 27 VAL C 83 LEU C 91 1 9 HELIX 28 28 PRO C 96 ASP C 98 5 3 HELIX 29 29 ILE C 104 PHE C 108 1 5 HELIX 30 30 VAL C 123 TRP C 133 1 11 HELIX 31 31 PRO C 136 GLU C 138 5 3 HELIX 32 32 ALA C 146 ILE C 150 5 5 SHEET 1 A 4 ILE A 117 GLY A 119 0 SHEET 2 A 4 ARG A 6 ILE A 11 -1 N ALA A 10 O HIS A 118 SHEET 3 A 4 PRO A 72 GLU A 79 -1 N TRP A 78 O THR A 7 SHEET 4 A 4 ARG A 34 ARG A 42 -1 N MET A 41 O VAL A 73 SHEET 1 B 3 ARG B 6 PHE B 8 0 SHEET 2 B 3 VAL B 73 GLU B 79 -1 N TRP B 78 O THR B 7 SHEET 3 B 3 ARG B 34 MET B 41 -1 N MET B 41 O VAL B 73 SHEET 1 C 2 ILE B 9 ILE B 11 0 SHEET 2 C 2 ILE B 117 GLY B 119 -1 N HIS B 118 O ALA B 10 SHEET 1 D 4 ILE C 117 GLY C 119 0 SHEET 2 D 4 ARG C 6 ILE C 11 -1 N ALA C 10 O HIS C 118 SHEET 3 D 4 VAL C 73 GLU C 79 -1 N TRP C 78 O THR C 7 SHEET 4 D 4 ARG C 34 MET C 41 -1 N MET C 41 O VAL C 73 SITE 1 NUL 6 LYS A 12 TYR A 52 VAL A 112 ASN A 115 SITE 2 NUL 6 HIS A 118 GLU A 152 SITE 1 AC1 10 LYS A 12 TYR A 52 PHE A 60 THR A 94 SITE 2 AC1 10 GLY A 113 ASN A 115 HIS A 118 HOH A 300 SITE 3 AC1 10 HOH A 394 GLU B 152 SITE 1 AC2 10 LYS B 12 TYR B 52 PHE B 60 ARG B 88 SITE 2 AC2 10 THR B 94 VAL B 112 ASN B 115 HIS B 118 SITE 3 AC2 10 HOH B 278 GLU C 152 SITE 1 AC3 13 GLU A 152 LYS C 12 TYR C 52 PHE C 60 SITE 2 AC3 13 LEU C 64 THR C 94 VAL C 112 ASN C 115 SITE 3 AC3 13 HIS C 118 HOH C 304 HOH C 332 HOH C 401 SITE 4 AC3 13 HOH C 443 CRYST1 128.610 128.610 88.180 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007775 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011340 0.00000