HEADER PHOSPHOTRIESTERASE 27-MAY-98 1BF6 TITLE PHOSPHOTRIESTERASE HOMOLOGY PROTEIN FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE HOMOLOGY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRIESTERASE, HYPOTHETICAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.L.BUCHBINDER,R.C.STEPHENSON,T.S.SCANLAN,R.J.FLETTERICK REVDAT 4 07-FEB-24 1BF6 1 REMARK LINK REVDAT 3 13-JUL-11 1BF6 1 VERSN REVDAT 2 24-FEB-09 1BF6 1 VERSN REVDAT 1 08-JUN-99 1BF6 0 JRNL AUTH J.L.BUCHBINDER,R.C.STEPHENSON,M.J.DRESSER,J.W.PITERA, JRNL AUTH 2 T.S.SCANLAN,R.J.FLETTERICK JRNL TITL BIOCHEMICAL CHARACTERIZATION AND CRYSTALLOGRAPHIC STRUCTURE JRNL TITL 2 OF AN ESCHERICHIA COLI PROTEIN FROM THE PHOSPHOTRIESTERASE JRNL TITL 3 GENE FAMILY. JRNL REF BIOCHEMISTRY V. 37 5096 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9548740 JRNL DOI 10.1021/BI971707+ REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.BUCHBINDER,R.C.STEPHENSON,M.J.DRESSER,J.W.PITERA, REMARK 1 AUTH 2 T.S.SCANLAN,R.J.FLETTERICK REMARK 1 TITL ERRATUM. BIOCHEMICAL CHARACTERIZATION AND CRYSTALLOGRAPHIC REMARK 1 TITL 2 STRUCTURE OF AN ESCHERICHIA COLI PROTEIN FROM THE REMARK 1 TITL 3 PHOSPHOTRIESTERASE GENE FAMILY REMARK 1 REF BIOCHEMISTRY V. 37 10860 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0100 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 69458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7012 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6312 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 679 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4595 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-96 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : 0.30000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASES, X-PLOR 3.8 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.40000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 125 CD GLU B 125 OE1 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 125 N - CA - CB ANGL. DEV. = 12.9 DEGREES REMARK 500 GLU A 125 OE1 - CD - OE2 ANGL. DEV. = 33.4 DEGREES REMARK 500 GLU A 125 CG - CD - OE1 ANGL. DEV. = -16.2 DEGREES REMARK 500 GLU A 125 CG - CD - OE2 ANGL. DEV. = -17.4 DEGREES REMARK 500 ALA B 124 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 GLU B 125 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 GLU B 125 OE1 - CD - OE2 ANGL. DEV. = 26.4 DEGREES REMARK 500 GLU B 125 CG - CD - OE2 ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 40.34 72.93 REMARK 500 ASP A 31 24.62 -146.00 REMARK 500 TYR A 84 -92.90 -67.56 REMARK 500 ASP A 259 2.44 -69.97 REMARK 500 THR A 264 -54.39 -128.03 REMARK 500 ARG B 29 77.70 -102.41 REMARK 500 ASP B 31 18.44 -146.35 REMARK 500 TYR B 84 -95.72 -66.72 REMARK 500 ALA B 124 -177.04 -172.03 REMARK 500 ASP B 259 0.08 -68.36 REMARK 500 THR B 264 -59.43 -125.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 124 GLU A 125 -41.33 REMARK 500 ALA B 124 GLU B 125 -36.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 14 NE2 119.1 REMARK 620 3 GLU A 125 OE2 86.8 85.7 REMARK 620 4 ASP A 243 OD1 87.9 91.5 171.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 293 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 125 OE1 REMARK 620 2 HIS A 158 ND1 94.8 REMARK 620 3 HIS A 186 NE2 114.4 93.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 293 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 12 NE2 REMARK 620 2 HIS B 14 NE2 120.8 REMARK 620 3 GLU B 125 OE2 89.9 80.9 REMARK 620 4 ASP B 243 OD1 89.1 94.9 174.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 294 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 125 OE1 REMARK 620 2 HIS B 158 ND1 94.7 REMARK 620 3 HIS B 186 NE2 116.1 98.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 529 DBREF 1BF6 A 2 292 UNP P45548 PHP_ECOLI 2 292 DBREF 1BF6 B 2 292 UNP P45548 PHP_ECOLI 2 292 SEQRES 1 A 291 SER PHE ASP PRO THR GLY TYR THR LEU ALA HIS GLU HIS SEQRES 2 A 291 LEU HIS ILE ASP LEU SER GLY PHE LYS ASN ASN VAL ASP SEQRES 3 A 291 CYS ARG LEU ASP GLN TYR ALA PHE ILE CYS GLN GLU MET SEQRES 4 A 291 ASN ASP LEU MET THR ARG GLY VAL ARG ASN VAL ILE GLU SEQRES 5 A 291 MET THR ASN ARG TYR MET GLY ARG ASN ALA GLN PHE MET SEQRES 6 A 291 LEU ASP VAL MET ARG GLU THR GLY ILE ASN VAL VAL ALA SEQRES 7 A 291 CYS THR GLY TYR TYR GLN ASP ALA PHE PHE PRO GLU HIS SEQRES 8 A 291 VAL ALA THR ARG SER VAL GLN GLU LEU ALA GLN GLU MET SEQRES 9 A 291 VAL ASP GLU ILE GLU GLN GLY ILE ASP GLY THR GLU LEU SEQRES 10 A 291 LYS ALA GLY ILE ILE ALA GLU ILE GLY THR SER GLU GLY SEQRES 11 A 291 LYS ILE THR PRO LEU GLU GLU LYS VAL PHE ILE ALA ALA SEQRES 12 A 291 ALA LEU ALA HIS ASN GLN THR GLY ARG PRO ILE SER THR SEQRES 13 A 291 HIS THR SER PHE SER THR MET GLY LEU GLU GLN LEU ALA SEQRES 14 A 291 LEU LEU GLN ALA HIS GLY VAL ASP LEU SER ARG VAL THR SEQRES 15 A 291 VAL GLY HIS CYS ASP LEU LYS ASP ASN LEU ASP ASN ILE SEQRES 16 A 291 LEU LYS MET ILE ASP LEU GLY ALA TYR VAL GLN PHE ASP SEQRES 17 A 291 THR ILE GLY LYS ASN SER TYR TYR PRO ASP GLU LYS ARG SEQRES 18 A 291 ILE ALA MET LEU HIS ALA LEU ARG ASP ARG GLY LEU LEU SEQRES 19 A 291 ASN ARG VAL MET LEU SER MET ASP ILE THR ARG ARG SER SEQRES 20 A 291 HIS LEU LYS ALA ASN GLY GLY TYR GLY TYR ASP TYR LEU SEQRES 21 A 291 LEU THR THR PHE ILE PRO GLN LEU ARG GLN SER GLY PHE SEQRES 22 A 291 SER GLN ALA ASP VAL ASP VAL MET LEU ARG GLU ASN PRO SEQRES 23 A 291 SER GLN PHE PHE GLN SEQRES 1 B 291 SER PHE ASP PRO THR GLY TYR THR LEU ALA HIS GLU HIS SEQRES 2 B 291 LEU HIS ILE ASP LEU SER GLY PHE LYS ASN ASN VAL ASP SEQRES 3 B 291 CYS ARG LEU ASP GLN TYR ALA PHE ILE CYS GLN GLU MET SEQRES 4 B 291 ASN ASP LEU MET THR ARG GLY VAL ARG ASN VAL ILE GLU SEQRES 5 B 291 MET THR ASN ARG TYR MET GLY ARG ASN ALA GLN PHE MET SEQRES 6 B 291 LEU ASP VAL MET ARG GLU THR GLY ILE ASN VAL VAL ALA SEQRES 7 B 291 CYS THR GLY TYR TYR GLN ASP ALA PHE PHE PRO GLU HIS SEQRES 8 B 291 VAL ALA THR ARG SER VAL GLN GLU LEU ALA GLN GLU MET SEQRES 9 B 291 VAL ASP GLU ILE GLU GLN GLY ILE ASP GLY THR GLU LEU SEQRES 10 B 291 LYS ALA GLY ILE ILE ALA GLU ILE GLY THR SER GLU GLY SEQRES 11 B 291 LYS ILE THR PRO LEU GLU GLU LYS VAL PHE ILE ALA ALA SEQRES 12 B 291 ALA LEU ALA HIS ASN GLN THR GLY ARG PRO ILE SER THR SEQRES 13 B 291 HIS THR SER PHE SER THR MET GLY LEU GLU GLN LEU ALA SEQRES 14 B 291 LEU LEU GLN ALA HIS GLY VAL ASP LEU SER ARG VAL THR SEQRES 15 B 291 VAL GLY HIS CYS ASP LEU LYS ASP ASN LEU ASP ASN ILE SEQRES 16 B 291 LEU LYS MET ILE ASP LEU GLY ALA TYR VAL GLN PHE ASP SEQRES 17 B 291 THR ILE GLY LYS ASN SER TYR TYR PRO ASP GLU LYS ARG SEQRES 18 B 291 ILE ALA MET LEU HIS ALA LEU ARG ASP ARG GLY LEU LEU SEQRES 19 B 291 ASN ARG VAL MET LEU SER MET ASP ILE THR ARG ARG SER SEQRES 20 B 291 HIS LEU LYS ALA ASN GLY GLY TYR GLY TYR ASP TYR LEU SEQRES 21 B 291 LEU THR THR PHE ILE PRO GLN LEU ARG GLN SER GLY PHE SEQRES 22 B 291 SER GLN ALA ASP VAL ASP VAL MET LEU ARG GLU ASN PRO SEQRES 23 B 291 SER GLN PHE PHE GLN HET ZN A 1 1 HET ZN A 293 1 HET SO4 A 294 5 HET SO4 A 295 5 HET MPD A 720 8 HET GOL A 529 6 HET ZN B 293 1 HET ZN B 294 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 MPD C6 H14 O2 FORMUL 8 GOL C3 H8 O3 FORMUL 11 HOH *288(H2 O) HELIX 1 1 SER A 20 LYS A 23 1 4 HELIX 2 2 VAL A 26 CYS A 28 5 3 HELIX 3 3 TYR A 33 ARG A 46 1 14 HELIX 4 4 ARG A 57 MET A 59 5 3 HELIX 5 5 ALA A 63 THR A 73 1 11 HELIX 6 6 ASP A 86 PHE A 88 5 3 HELIX 7 7 GLU A 91 THR A 95 5 5 HELIX 8 8 VAL A 98 GLU A 110 1 13 HELIX 9 9 PRO A 135 THR A 151 1 17 HELIX 10 10 SER A 160 SER A 162 5 3 HELIX 11 11 GLY A 165 ALA A 174 1 10 HELIX 12 12 LEU A 179 ARG A 181 5 3 HELIX 13 13 LEU A 193 ASP A 201 1 9 HELIX 14 14 ASP A 219 ASP A 231 1 13 HELIX 15 15 LEU A 235 ARG A 237 5 3 HELIX 16 16 ARG A 247 HIS A 249 5 3 HELIX 17 17 LYS A 251 ASN A 253 5 3 HELIX 18 18 TYR A 258 THR A 263 5 6 HELIX 19 19 PHE A 265 GLN A 271 1 7 HELIX 20 20 GLN A 276 LEU A 283 1 8 HELIX 21 21 GLU A 285 PHE A 290 1 6 HELIX 22 22 SER B 20 LYS B 23 1 4 HELIX 23 23 VAL B 26 CYS B 28 5 3 HELIX 24 24 TYR B 33 ARG B 46 1 14 HELIX 25 25 ARG B 57 MET B 59 5 3 HELIX 26 26 ALA B 63 THR B 73 1 11 HELIX 27 27 ASP B 86 PHE B 88 5 3 HELIX 28 28 GLU B 91 THR B 95 5 5 HELIX 29 29 VAL B 98 GLU B 110 1 13 HELIX 30 30 PRO B 135 THR B 151 1 17 HELIX 31 31 GLY B 165 HIS B 175 1 11 HELIX 32 32 LEU B 179 ARG B 181 5 3 HELIX 33 33 LEU B 193 ASP B 201 1 9 HELIX 34 34 ASP B 219 ASP B 231 1 13 HELIX 35 35 LEU B 235 ARG B 237 5 3 HELIX 36 36 ARG B 247 HIS B 249 5 3 HELIX 37 37 LYS B 251 ASN B 253 5 3 HELIX 38 38 TYR B 258 THR B 263 5 6 HELIX 39 39 PHE B 265 GLN B 271 1 7 HELIX 40 40 GLN B 276 LEU B 283 1 8 HELIX 41 41 GLU B 285 PHE B 290 1 6 SHEET 1 A 3 ASN A 76 VAL A 78 0 SHEET 2 A 3 VAL A 48 ILE A 52 1 N VAL A 51 O ASN A 76 SHEET 3 A 3 TYR A 8 LEU A 10 1 N TYR A 8 O ARG A 49 SHEET 1 B 2 VAL A 206 PHE A 208 0 SHEET 2 B 2 VAL A 238 LEU A 240 1 N MET A 239 O VAL A 206 SHEET 1 C 3 ASN B 76 VAL B 78 0 SHEET 2 C 3 VAL B 48 ILE B 52 1 N VAL B 51 O ASN B 76 SHEET 3 C 3 TYR B 8 LEU B 10 1 N TYR B 8 O ARG B 49 SHEET 1 D 2 VAL B 206 PHE B 208 0 SHEET 2 D 2 VAL B 238 LEU B 240 1 N MET B 239 O VAL B 206 SHEET 1 E 2 ALA B 79 THR B 81 0 SHEET 2 E 2 ALA B 120 ILE B 123 1 N GLY B 121 O ALA B 79 LINK ZN ZN A 1 NE2 HIS A 12 1555 1555 2.28 LINK ZN ZN A 1 NE2 HIS A 14 1555 1555 2.16 LINK ZN ZN A 1 OE2 GLU A 125 1555 1555 2.38 LINK ZN ZN A 1 OD1 ASP A 243 1555 1555 2.42 LINK OE1 GLU A 125 ZN ZN A 293 1555 1555 2.20 LINK ND1 HIS A 158 ZN ZN A 293 1555 1555 2.27 LINK NE2 HIS A 186 ZN ZN A 293 1555 1555 2.18 LINK NE2 HIS B 12 ZN ZN B 293 1555 1555 2.31 LINK NE2 HIS B 14 ZN ZN B 293 1555 1555 2.19 LINK OE2 GLU B 125 ZN ZN B 293 1555 1555 2.41 LINK OE1 GLU B 125 ZN ZN B 294 1555 1555 2.18 LINK ND1 HIS B 158 ZN ZN B 294 1555 1555 2.30 LINK NE2 HIS B 186 ZN ZN B 294 1555 1555 2.22 LINK OD1 ASP B 243 ZN ZN B 293 1555 1555 2.45 SITE 1 AC1 5 HIS A 12 HIS A 14 GLU A 125 ASP A 243 SITE 2 AC1 5 ZN A 293 SITE 1 AC2 4 ZN A 1 GLU A 125 HIS A 158 HIS A 186 SITE 1 AC3 5 HIS B 12 HIS B 14 GLU B 125 ASP B 243 SITE 2 AC3 5 ZN B 294 SITE 1 AC4 4 GLU B 125 HIS B 158 HIS B 186 ZN B 293 SITE 1 AC5 6 SER A 162 THR A 163 MET A 164 LYS A 190 SITE 2 AC5 6 ASN A 195 HOH A 759 SITE 1 AC6 5 LYS A 213 TYR A 216 THR A 245 ARG A 246 SITE 2 AC6 5 HIS A 249 SITE 1 AC7 3 ASP B 201 LEU B 202 HOH B 324 SITE 1 AC8 4 ARG A 57 TYR A 58 ARG A 96 HOH A 749 CRYST1 42.070 80.800 98.200 90.00 97.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023770 0.000000 0.002961 0.00000 SCALE2 0.000000 0.012376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010262 0.00000 MTRIX1 1 -0.999993 -0.000858 -0.000305 6.20002 1 MTRIX2 1 -0.000858 0.999995 -0.001697 7.79165 1 MTRIX3 1 0.000308 -0.001697 -0.999998 -48.62572 1