HEADER IMMUNOGLOBULIN 27-MAY-97 1BFV TITLE MONOCLONAL ANTIBODY FRAGMENT FV4155 FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FV4155; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: MONOCLONAL ANTIBODY FV FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: FV4155; COMPND 8 CHAIN: H; COMPND 9 FRAGMENT: MONOCLONAL ANTIBODY FV FRAGMENT; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: JM109 KEYWDS IMMUNOGLOBULIN, FV FRAGMENT, STEROID HORMONE, FINE SPECIFICITY EXPDTA X-RAY DIFFRACTION AUTHOR C.H.TRINH,S.E.V.PHILLIPS REVDAT 4 02-AUG-23 1BFV 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1BFV 1 VERSN REVDAT 2 01-APR-03 1BFV 1 JRNL REVDAT 1 03-DEC-97 1BFV 0 JRNL AUTH C.H.TRINH,S.D.HEMMINGTON,M.E.VERHOEYEN,S.E.PHILLIPS JRNL TITL ANTIBODY FRAGMENT FV4155 BOUND TO TWO CLOSELY RELATED JRNL TITL 2 STEROID HORMONES: THE STRUCTURAL BASIS OF FINE SPECIFICITY. JRNL REF STRUCTURE V. 5 937 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9261086 JRNL DOI 10.1016/S0969-2126(97)00247-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 13749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 724 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1870 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 724 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 14473 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.011 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.037 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.039 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : 0.000 ; 0.050 REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.012 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.109 ; 0.120 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.174 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.193 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.175 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 0.000 ; 20.000 REMARK 3 PLANAR (DEGREES) : 3.879 ; 20.000 REMARK 3 STAGGERED (DEGREES) : 14.647; 20.000 REMARK 3 TRANSVERSE (DEGREES) : 22.008; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.562 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.435 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.789 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.872 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 VAL L 56 HAS DIHEDRAL ANGLES WHICH LIE OUTSIDE THEIR REMARK 3 EXPECTED RANGE IN THE GAMMA QUADRANT OF THE REMARK 3 RAMACHANDRAN PLOT. REMARK 4 REMARK 4 1BFV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171705. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MSC DOUBLE FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, ROTAVATA REMARK 200 DATA SCALING SOFTWARE : CCP4 (ROTAVATA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 9.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24300 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1NBV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 18% REMARK 280 (W/V) PEG 8000, 200MM ZN ACETATE AND 100MM NA CACODYLATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.95000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.95000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -335.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 89.90000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 89.90000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.90000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 89.90000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 89.90000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -59.90000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 89.90000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 89.90000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 59.90000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 89.90000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 89.90000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.90000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 286 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 113 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 24 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG L 24 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG L 35 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLU L 86 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG H 38 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP H 62 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG H 67 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG H 67 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG H 72 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASN H 87 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG H 98 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -53.80 69.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 38 0.11 SIDE CHAIN REMARK 500 ARG H 67 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 1 N REMARK 620 2 ASP L 1 O 73.8 REMARK 620 3 GLU L 3 OE2 153.7 86.6 REMARK 620 4 HOH L 257 O 109.3 171.9 88.0 REMARK 620 5 GLU H 46 OE2 108.0 88.6 88.5 97.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 1 OD1 REMARK 620 2 ASP L 1 OD1 78.5 REMARK 620 3 GLU L 3 OE1 72.2 146.0 REMARK 620 4 GLU L 3 OE1 110.2 81.1 92.8 REMARK 620 5 HOH L 261 O 153.7 108.5 105.5 96.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 98 ND1 REMARK 620 2 GLU H 89 OE1 86.8 REMARK 620 3 GLU H 89 OE2 93.8 54.2 REMARK 620 4 HOH H 275 O 119.1 135.7 143.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN L 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN H 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STG H 200 DBREF 1BFV L 1 113 UNP P01631 KV2G_MOUSE 1 113 DBREF 1BFV H 1 119 PDB 1BFV 1BFV 1 119 SEQADV 1BFV ILE L 2 UNP P01631 VAL 2 CONFLICT SEQADV 1BFV GLU L 3 UNP P01631 VAL 3 CONFLICT SEQADV 1BFV LEU L 4 UNP P01631 MET 4 CONFLICT SEQADV 1BFV SER L 7 UNP P01631 THR 7 CONFLICT SEQADV 1BFV PRO L 9 UNP P01631 LEU 9 CONFLICT SEQADV 1BFV VAL L 19 UNP P01631 ALA 19 CONFLICT SEQADV 1BFV SER L 31 UNP P01631 HIS 31 CONFLICT SEQADV 1BFV ASN L 32 UNP P01631 SER 32 CONFLICT SEQADV 1BFV ARG L 34 UNP P01631 GLY 34 CONFLICT SEQADV 1BFV ARG L 35 UNP P01631 ASN 35 CONFLICT SEQADV 1BFV ASN L 36 UNP P01631 THR 36 CONFLICT SEQADV 1BFV HIS L 39 UNP P01631 ASN 39 CONFLICT SEQADV 1BFV PRO L 45 UNP P01631 ALA 45 CONFLICT SEQADV 1BFV VAL L 52 UNP P01631 LEU 52 CONFLICT SEQADV 1BFV ALA L 84 UNP P01631 GLU 84 CONFLICT SEQADV 1BFV LEU L 90 UNP P01631 ILE 90 CONFLICT SEQADV 1BFV SER L 96 UNP P01631 THR 96 CONFLICT SEQADV 1BFV SER L 97 UNP P01631 THR 97 CONFLICT SEQADV 1BFV LEU L 101 UNP P01631 PRO 101 CONFLICT SEQADV 1BFV SER L 105 UNP P01631 GLY 105 CONFLICT SEQRES 1 L 113 ASP ILE GLU LEU THR GLN SER PRO PRO SER LEU PRO VAL SEQRES 2 L 113 SER LEU GLY ASP GLN VAL SER ILE SER CYS ARG SER SER SEQRES 3 L 113 GLN SER LEU VAL SER ASN ASN ARG ARG ASN TYR LEU HIS SEQRES 4 L 113 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU VAL SEQRES 5 L 113 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 113 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 113 LYS ILE SER ARG VAL ALA ALA GLU ASP LEU GLY LEU TYR SEQRES 8 L 113 PHE CYS SER GLN SER SER HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 113 SER GLY THR LYS LEU GLU ILE LYS ARG SEQRES 1 H 119 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL ASN SEQRES 2 H 119 LEU GLY GLY SER MET THR LEU SER CYS VAL ALA SER GLY SEQRES 3 H 119 PHE THR PHE ASN THR TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 H 119 THR PRO GLU LYS THR LEU GLU LEU VAL ALA ALA ILE ASN SEQRES 5 H 119 SER ASP GLY GLU PRO ILE TYR TYR PRO ASP THR LEU LYS SEQRES 6 H 119 GLY ARG VAL THR ILE SER ARG ASP ASN ALA LYS LYS THR SEQRES 7 H 119 LEU TYR LEU GLN MET SER SER LEU ASN PHE GLU ASP THR SEQRES 8 H 119 ALA LEU TYR TYR CYS ALA ARG LEU ASN TYR ALA VAL TYR SEQRES 9 H 119 GLY MET ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 H 119 SER SER HET ZN L 200 1 HET ZN L 201 1 HET ZN H 201 1 HET STG H 200 33 HETNAM ZN ZINC ION HETNAM STG ESTRIOL 3-(B-D-GLUCURONIDE) FORMUL 3 ZN 3(ZN 2+) FORMUL 6 STG C24 H32 O9 FORMUL 7 HOH *182(H2 O) HELIX 1 1 ALA L 85 ASP L 87 5 3 HELIX 2 2 PHE H 29 THR H 31 5 3 HELIX 3 3 PHE H 88 ASP H 90 5 3 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 SER L 25 -1 N ARG L 24 O THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 N ILE L 80 O VAL L 19 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 72 O ASP L 75 SHEET 1 B 5 SER L 10 VAL L 13 0 SHEET 2 B 5 THR L 107 ILE L 111 1 N LYS L 108 O LEU L 11 SHEET 3 B 5 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 B 5 LEU L 38 GLN L 43 -1 N GLN L 43 O LEU L 90 SHEET 5 B 5 PRO L 49 ILE L 53 -1 N ILE L 53 O TRP L 40 SHEET 1 C 4 GLN H 3 SER H 7 0 SHEET 2 C 4 MET H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 C 4 THR H 78 MET H 83 -1 N MET H 83 O MET H 18 SHEET 4 C 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 D 6 GLY H 10 ASN H 13 0 SHEET 2 D 6 THR H 113 SER H 118 1 N THR H 116 O GLY H 10 SHEET 3 D 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 113 SHEET 4 D 6 MET H 34 GLN H 39 -1 N GLN H 39 O LEU H 93 SHEET 5 D 6 LEU H 45 ILE H 51 -1 N ILE H 51 O MET H 34 SHEET 6 D 6 PRO H 57 TYR H 60 -1 N TYR H 59 O ALA H 50 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.07 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.06 LINK N ASP L 1 ZN ZN L 200 1555 1555 2.28 LINK O ASP L 1 ZN ZN L 200 1555 1555 2.16 LINK OD1 ASP L 1 ZN ZN L 201 1555 1555 2.51 LINK OD1 ASP L 1 ZN ZN L 201 8666 1555 2.01 LINK OE2 GLU L 3 ZN ZN L 200 1555 1555 2.15 LINK OE1 GLU L 3 ZN ZN L 201 1555 1555 1.94 LINK OE1 GLU L 3 ZN ZN L 201 8666 1555 2.09 LINK ND1 HIS L 98 ZN ZN H 201 8666 1555 2.52 LINK ZN ZN L 200 O HOH L 257 1555 1555 2.23 LINK ZN ZN L 200 OE2 GLU H 46 1555 8666 2.13 LINK ZN ZN L 201 O HOH L 261 1555 8666 2.13 LINK OE1 GLU H 89 ZN ZN H 201 1555 1555 2.26 LINK OE2 GLU H 89 ZN ZN H 201 1555 1555 2.58 LINK ZN ZN H 201 O HOH H 275 1555 1555 2.70 CISPEP 1 SER L 7 PRO L 8 0 -6.38 CISPEP 2 VAL L 99 PRO L 100 0 -0.72 SITE 1 AC1 5 GLU H 46 ASP L 1 GLU L 3 ZN L 201 SITE 2 AC1 5 HOH L 257 SITE 1 AC2 4 ASP L 1 GLU L 3 ZN L 200 HOH L 261 SITE 1 AC3 3 GLU H 89 HOH H 275 HIS L 98 SITE 1 AC4 20 THR H 28 THR H 31 TYR H 32 TYR H 33 SITE 2 AC4 20 LEU H 99 ASN H 100 TYR H 101 TYR H 104 SITE 3 AC4 20 GLY H 105 HOH H 202 HOH H 204 HOH H 234 SITE 4 AC4 20 HOH H 241 HOH H 246 HOH H 264 HOH H 293 SITE 5 AC4 20 HOH H 295 VAL L 99 PRO L 100 LEU L 101 CRYST1 89.900 89.900 59.900 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016694 0.00000