HEADER FAMILY 10 XYLANASE 05-JUN-98 1BG4 TITLE XYLANASE FROM PENICILLIUM SIMPLICISSIMUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM SIMPLICISSIMUM; SOURCE 3 ORGANISM_TAXID: 69488; SOURCE 4 COLLECTION: BT 2246, CULTURE COLLECTION OF THE INSTITUTE OF SOURCE 5 BIOTECHNOLOGY, UNIVERSITY OF TECHNOLOGY, GRAZ, AUSTRIA; SOURCE 6 CELLULAR_LOCATION: SECRETED; SOURCE 7 OTHER_DETAILS: PENICILLIUM SIMPLICISSIMUM (OUDEM.) THOM KEYWDS FAMILY 10 XYLANASE, PENICILLIUM SIMPLICISSIMUM, TIM-BARREL, GLYCOSYL KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMIDT,C.KRATKY REVDAT 7 30-OCT-24 1BG4 1 REMARK REVDAT 6 02-AUG-23 1BG4 1 REMARK LINK REVDAT 5 25-DEC-19 1BG4 1 SEQRES LINK REVDAT 4 13-JUL-11 1BG4 1 VERSN REVDAT 3 24-FEB-09 1BG4 1 VERSN REVDAT 2 30-MAR-99 1BG4 1 JRNL REVDAT 1 12-AUG-98 1BG4 0 JRNL AUTH A.SCHMIDT,A.SCHLACHER,W.STEINER,H.SCHWAB,C.KRATKY JRNL TITL STRUCTURE OF THE XYLANASE FROM PENICILLIUM SIMPLICISSIMUM. JRNL REF PROTEIN SCI. V. 7 2081 1998 JRNL REFN ISSN 0961-8368 JRNL PMID 9792094 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4462 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4840 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 548 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.532 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.844 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.441 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.923 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM.PYQ REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : PARAM.GLY REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : TOP.GLYC REMARK 3 TOPOLOGY FILE 4 : TOP.PYQ REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PARAMETER/TOPOLOGY FILES FOR HET GROUPS REMARK 3 EXCEPT WATER SELF-SETUP REMARK 4 REMARK 4 1BG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.850 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43712 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.851 REMARK 200 STARTING MODEL: PDB ENTRY 1XYZ REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED AT THE ELETTRA SYNCHROTRON LIGHT REMARK 200 SOURCE, TRIESTE, ITALY REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 1.9M REMARK 280 (NH4)2SO4, 0.1M TRISHCL PH 8.4 AT 4 C, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.60000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.60000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 -25.54 -149.53 REMARK 500 LEU A 177 49.96 -108.49 REMARK 500 GLU A 238 54.92 -142.54 REMARK 500 VAL A 270 -61.96 -100.44 REMARK 500 SER A 281 63.35 37.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 125 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 621 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 17 OH REMARK 620 2 ILE A 236 O 131.7 REMARK 620 3 THR A 266 OG1 107.7 98.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 624 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 46 O REMARK 620 2 HIS A 84 O 107.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 623 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 49 O REMARK 620 2 THR A 63 O 131.8 REMARK 620 3 HOH A 561 O 94.4 119.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 622 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 143 OG REMARK 620 2 TYR A 153 OH 97.9 REMARK 620 3 HOH A 550 O 117.9 128.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 620 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 162 NH1 REMARK 620 2 ASP A 165 O 160.1 REMARK 620 3 ALA A 168 O 86.5 97.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 619 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 226 O REMARK 620 2 THR A 231 N 141.7 REMARK 620 3 THR A 231 OG1 127.3 61.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 622 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 623 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 624 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 632 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 633 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 625 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 626 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 627 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 628 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 629 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 630 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 631 DBREF 1BG4 A 2 302 UNP P56588 XYNA_PENSI 2 302 SEQRES 1 A 302 PCA ALA SER VAL SER ILE ASP ALA LYS PHE LYS ALA HIS SEQRES 2 A 302 GLY LYS LYS TYR LEU GLY THR ILE GLY ASP GLN TYR THR SEQRES 3 A 302 LEU THR LYS ASN THR LYS ASN PRO ALA ILE ILE LYS ALA SEQRES 4 A 302 ASP PHE GLY GLN LEU THR PRO GLU ASN SER MET LYS TRP SEQRES 5 A 302 ASP ALA THR GLU PRO ASN ARG GLY GLN PHE THR PHE SER SEQRES 6 A 302 GLY SER ASP TYR LEU VAL ASN PHE ALA GLN SER ASN GLY SEQRES 7 A 302 LYS LEU ILE ARG GLY HIS THR LEU VAL TRP HIS SER GLN SEQRES 8 A 302 LEU PRO GLY TRP VAL SER SER ILE THR ASP LYS ASN THR SEQRES 9 A 302 LEU ILE SER VAL LEU LYS ASN HIS ILE THR THR VAL MET SEQRES 10 A 302 THR ARG TYR LYS GLY LYS ILE TYR ALA TRP ASP VAL LEU SEQRES 11 A 302 ASN GLU ILE PHE ASN GLU ASP GLY SER LEU ARG ASN SER SEQRES 12 A 302 VAL PHE TYR ASN VAL ILE GLY GLU ASP TYR VAL ARG ILE SEQRES 13 A 302 ALA PHE GLU THR ALA ARG SER VAL ASP PRO ASN ALA LYS SEQRES 14 A 302 LEU TYR ILE ASN ASP TYR ASN LEU ASP SER ALA GLY TYR SEQRES 15 A 302 SER LYS VAL ASN GLY MET VAL SER HIS VAL LYS LYS TRP SEQRES 16 A 302 LEU ALA ALA GLY ILE PRO ILE ASP GLY ILE GLY SER GLN SEQRES 17 A 302 THR HIS LEU GLY ALA GLY ALA GLY SER ALA VAL ALA GLY SEQRES 18 A 302 ALA LEU ASN ALA LEU ALA SER ALA GLY THR LYS GLU ILE SEQRES 19 A 302 ALA ILE THR GLU LEU ASP ILE ALA GLY ALA SER SER THR SEQRES 20 A 302 ASP TYR VAL ASN VAL VAL ASN ALA CYS LEU ASN GLN ALA SEQRES 21 A 302 LYS CYS VAL GLY ILE THR VAL TRP GLY VAL ALA ASP PRO SEQRES 22 A 302 ASP SER TRP ARG SER SER SER SER PRO LEU LEU PHE ASP SEQRES 23 A 302 GLY ASN TYR ASN PRO LYS ALA ALA TYR ASN ALA ILE ALA SEQRES 24 A 302 ASN ALA LEU MODRES 1BG4 PCA A 1 GLN PYROGLUTAMIC ACID HET PCA A 1 8 HET NA A 619 1 HET NA A 620 1 HET NA A 621 1 HET NA A 622 1 HET NA A 623 1 HET NA A 624 1 HET TRS A 632 8 HET TRS A 633 8 HET GOL A 625 6 HET GOL A 626 6 HET GOL A 627 6 HET GOL A 628 6 HET GOL A 629 6 HET GOL A 630 6 HET GOL A 631 6 HETNAM PCA PYROGLUTAMIC ACID HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NA 6(NA 1+) FORMUL 8 TRS 2(C4 H12 N O3 1+) FORMUL 10 GOL 7(C3 H8 O3) FORMUL 17 HOH *316(H2 O) HELIX 1 A'' SER A 5 ALA A 12 1 8 HELIX 2 B1 GLN A 24 LYS A 29 1 6 HELIX 3 B LYS A 32 ASP A 40 1 9 HELIX 4 C1 TRP A 52 GLU A 56 1 5 HELIX 5 C SER A 65 SER A 76 1 12 HELIX 6 D1 GLY A 94 SER A 97 1 4 HELIX 7 D LYS A 102 ARG A 119 1 18 HELIX 8 E1 SER A 143 GLU A 151 1 9 HELIX 9 E ASP A 152 VAL A 164 1 13 HELIX 10 F TYR A 182 ALA A 197 1 16 HELIX 11 G VAL A 219 ALA A 225 1 7 HELIX 12 H SER A 246 LEU A 257 1 12 HELIX 13 A1 ASP A 272 ASP A 274 5 3 HELIX 14 A2 SER A 278 SER A 280 5 3 HELIX 15 A' ALA A 293 LEU A 302 1 10 SHEET 1 1 8 TYR A 17 GLY A 22 0 SHEET 2 1 8 GLN A 43 GLU A 47 1 SHEET 3 1 8 LEU A 80 GLN A 91 1 SHEET 4 1 8 ALA A 126 GLU A 132 1 SHEET 5 1 8 LYS A 169 ASP A 174 1 SHEET 6 1 8 GLY A 204 LEU A 211 1 SHEET 7 1 8 GLU A 233 ILE A 241 1 SHEET 8 1 8 CYS A 262 VAL A 267 1 SSBOND 1 CYS A 256 CYS A 262 1555 1555 2.04 LINK C PCA A 1 N ALA A 2 1555 1555 1.33 LINK OH TYR A 17 NA NA A 621 1555 1555 2.70 LINK O PRO A 46 NA NA A 624 1555 1555 2.73 LINK O SER A 49 NA NA A 623 1555 1555 2.80 LINK O THR A 63 NA NA A 623 1555 1555 2.85 LINK O HIS A 84 NA NA A 624 1555 1555 2.58 LINK OG SER A 143 NA NA A 622 1555 1555 2.67 LINK OH TYR A 153 NA NA A 622 1555 1555 2.79 LINK NH1 ARG A 162 NA NA A 620 1555 1555 2.82 LINK O ASP A 165 NA NA A 620 1555 1555 2.67 LINK O ALA A 168 NA NA A 620 1555 1555 2.72 LINK O LEU A 226 NA NA A 619 1555 1555 2.84 LINK N THR A 231 NA NA A 619 1555 1555 2.97 LINK OG1 THR A 231 NA NA A 619 1555 1555 2.66 LINK O ILE A 236 NA NA A 621 1555 1555 2.84 LINK OG1 THR A 266 NA NA A 621 1555 1555 2.64 LINK O HOH A 550 NA NA A 622 1555 1555 2.62 LINK O HOH A 561 NA NA A 623 1555 1555 2.38 CISPEP 1 HIS A 84 THR A 85 0 -18.28 SITE 1 ACT 2 GLU A 132 GLU A 238 SITE 1 AC1 5 LEU A 226 ALA A 227 GLY A 230 THR A 231 SITE 2 AC1 5 LYS A 261 SITE 1 AC2 5 ARG A 162 ASP A 165 PRO A 166 ALA A 168 SITE 2 AC2 5 LEU A 170 SITE 1 AC3 5 TYR A 17 ARG A 82 ILE A 236 THR A 237 SITE 2 AC3 5 THR A 266 SITE 1 AC4 3 SER A 143 TYR A 153 HOH A 550 SITE 1 AC5 5 SER A 49 ALA A 54 THR A 63 SER A 67 SITE 2 AC5 5 HOH A 561 SITE 1 AC6 7 PRO A 46 GLU A 47 ASN A 48 SER A 49 SITE 2 AC6 7 MET A 50 LYS A 51 HIS A 84 SITE 1 AC7 15 TYR A 146 ILE A 149 GLY A 150 GLU A 151 SITE 2 AC7 15 GLY A 214 SER A 217 THR A 247 ASP A 248 SITE 3 AC7 15 ASN A 251 HOH A 327 HOH A 339 HOH A 367 SITE 4 AC7 15 HOH A 474 HOH A 499 HOH A 533 SITE 1 AC8 8 GLN A 24 TYR A 69 GLY A 221 HOH A 331 SITE 2 AC8 8 HOH A 381 HOH A 396 HOH A 600 HOH A 610 SITE 1 AC9 7 ASP A 68 ASN A 72 ARG A 119 TYR A 120 SITE 2 AC9 7 LYS A 123 HOH A 433 HOH A 563 SITE 1 BC1 10 THR A 26 GLU A 47 ASN A 48 LYS A 193 SITE 2 BC1 10 SER A 228 ASP A 274 HOH A 386 HOH A 429 SITE 3 BC1 10 HOH A 535 GOL A 627 SITE 1 BC2 9 ASN A 48 SER A 49 ALA A 54 ALA A 227 SITE 2 BC2 9 HOH A 479 HOH A 510 HOH A 535 HOH A 561 SITE 3 BC2 9 GOL A 626 SITE 1 BC3 6 HIS A 13 GLN A 61 PHE A 62 THR A 63 SITE 2 BC3 6 LEU A 257 HOH A 588 SITE 1 BC4 9 LYS A 51 HIS A 84 GLU A 132 GLN A 208 SITE 2 BC4 9 GLU A 238 TRP A 268 HOH A 340 HOH A 412 SITE 3 BC4 9 GOL A 631 SITE 1 BC5 9 SER A 5 ASP A 7 ALA A 8 LYS A 11 SITE 2 BC5 9 ALA A 39 ASP A 40 PHE A 41 HOH A 434 SITE 3 BC5 9 HOH A 607 SITE 1 BC6 8 GLU A 47 ASN A 48 LYS A 51 GLN A 91 SITE 2 BC6 8 TRP A 268 TRP A 276 HOH A 353 GOL A 629 CRYST1 81.020 81.020 113.400 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012343 0.007126 0.000000 0.00000 SCALE2 0.000000 0.014252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008818 0.00000 HETATM 1 N PCA A 1 61.703 61.494 21.209 1.00 28.13 N HETATM 2 CA PCA A 1 62.144 61.814 22.563 1.00 28.28 C HETATM 3 CB PCA A 1 62.811 63.189 22.450 1.00 26.96 C HETATM 4 CG PCA A 1 62.646 63.602 20.997 1.00 28.29 C HETATM 5 CD PCA A 1 61.942 62.438 20.324 1.00 29.24 C HETATM 6 OE PCA A 1 61.659 62.387 19.119 1.00 31.43 O HETATM 7 C PCA A 1 60.981 61.866 23.538 1.00 28.21 C HETATM 8 O PCA A 1 59.936 62.456 23.242 1.00 28.34 O