HEADER OUTER MEMBRANE PROTEIN 10-JUN-98 1BHY TITLE LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF P64K FROM MASC DATA CAVEAT 1BHY FAD A 600 HAS WRONG CHIRALITY AT ATOM C2' FAD A 600 HAS CAVEAT 2 1BHY WRONG CHIRALITY AT ATOM C3' FAD A 600 HAS WRONG CHIRALITY CAVEAT 3 1BHY AT ATOM C4' COMPND MOL_ID: 1; COMPND 2 MOLECULE: P64K; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487 KEYWDS OUTER MEMBRANE PROTEIN, MASC, MULTIWAVELENGTH ANOMALOUS SOLVENT KEYWDS 2 CONTRAST EXPDTA X-RAY DIFFRACTION AUTHOR M.RAMIN,W.SHEPARD,R.FOURME,R.KAHN REVDAT 8 25-DEC-24 1BHY 1 CAVEAT LINK REVDAT 7 02-AUG-23 1BHY 1 REMARK SEQADV LINK REVDAT 6 04-APR-18 1BHY 1 REMARK REVDAT 5 13-JUL-11 1BHY 1 VERSN REVDAT 4 24-FEB-09 1BHY 1 VERSN REVDAT 3 01-APR-03 1BHY 1 JRNL REVDAT 2 18-NOV-98 1BHY 1 COMPND REMARK SEQRES KEYWDS REVDAT 2 2 1 HEADER REVDAT 1 04-NOV-98 1BHY 0 JRNL AUTH M.RAMIN,W.SHEPARD,R.FOURME,R.KAHN JRNL TITL MULTIWAVELENGTH ANOMALOUS SOLVENT CONTRAST (MASC): JRNL TITL 2 DERIVATION OF ENVELOPE STRUCTURE-FACTOR AMPLITUDES AND JRNL TITL 3 COMPARISON WITH MODEL VALUES. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 55 157 1999 JRNL REFN ISSN 0907-4449 JRNL PMID 10089406 JRNL DOI 10.1107/S090744499800626X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.LI DE LA SIERRA,L.PERNOT,T.PRANGE,P.SALUDJIAN,M.SCHILTZ, REMARK 1 AUTH 2 R.FOURME,G.PADRON REMARK 1 TITL MOLECULAR STRUCTURE OF THE LIPOAMIDE DEHYDROGENASE DOMAIN OF REMARK 1 TITL 2 A SURFACE ANTIGEN FROM NEISSERIA MENINGITIDIS REMARK 1 REF J.MOL.BIOL. V. 269 129 1997 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 4.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.338 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-95 REMARK 200 TEMPERATURE (KELVIN) : 124 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, AGROVATA (CCP4) REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (AGROVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6008 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.180 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : 0.06000 REMARK 200 FOR SHELL : 10.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT, REMARK 200 RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: 1OJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM AMMONIUM REMARK 280 SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.51000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.76500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.25500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.76500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.25500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.51000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.02000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA PRO A 475 OH TYR A 553 1.83 REMARK 500 N PRO A 475 OH TYR A 553 1.93 REMARK 500 N ALA A 247 O ALA A 255 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 274 CB SER A 274 OG 0.084 REMARK 500 SER A 321 CB SER A 321 OG 0.090 REMARK 500 PRO A 402 C ASN A 403 N 0.139 REMARK 500 LYS A 598 C LYS A 598 OXT 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TYR A 135 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 TYR A 135 CB - CG - CD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 LEU A 173 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 ILE A 190 N - CA - CB ANGL. DEV. = 14.8 DEGREES REMARK 500 TYR A 192 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 198 CB - CG - OD1 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 203 CG - CD - NE ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG A 203 NH1 - CZ - NH2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 203 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 205 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 205 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 227 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 232 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 HIS A 240 CA - CB - CG ANGL. DEV. = -10.2 DEGREES REMARK 500 ASP A 249 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 GLN A 253 N - CA - CB ANGL. DEV. = 16.6 DEGREES REMARK 500 GLN A 253 CB - CG - CD ANGL. DEV. = 16.2 DEGREES REMARK 500 ARG A 275 NH1 - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 287 CD - NE - CZ ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 290 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 326 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 355 NH1 - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG A 355 NE - CZ - NH2 ANGL. DEV. = -9.6 DEGREES REMARK 500 THR A 365 N - CA - CB ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 400 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 400 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 GLU A 423 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 GLU A 423 OE1 - CD - OE2 ANGL. DEV. = 9.5 DEGREES REMARK 500 VAL A 424 N - CA - CB ANGL. DEV. = -14.9 DEGREES REMARK 500 ASP A 425 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 425 CB - CG - OD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLU A 460 OE1 - CD - OE2 ANGL. DEV. = 7.2 DEGREES REMARK 500 PHE A 469 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ARG A 472 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 VAL A 473 N - CA - CB ANGL. DEV. = -16.6 DEGREES REMARK 500 VAL A 487 CB - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 VAL A 487 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 THR A 490 N - CA - CB ANGL. DEV. = 11.6 DEGREES REMARK 500 ILE A 501 N - CA - CB ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 534 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 534 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ILE A 535 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 ILE A 535 N - CA - CB ANGL. DEV. = 14.1 DEGREES REMARK 500 VAL A 541 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 TYR A 553 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 TYR A 553 CB - CG - CD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -87.77 164.99 REMARK 500 CYS A 166 -71.42 -37.06 REMARK 500 LEU A 185 -8.38 -46.96 REMARK 500 PRO A 238 -7.99 -40.17 REMARK 500 GLU A 252 -8.95 81.09 REMARK 500 ALA A 272 8.21 -66.42 REMARK 500 ASP A 285 135.49 167.62 REMARK 500 GLU A 299 151.43 171.94 REMARK 500 MET A 337 57.33 24.48 REMARK 500 ASP A 373 45.07 -101.07 REMARK 500 ASN A 383 27.32 49.84 REMARK 500 ASN A 403 33.18 -99.43 REMARK 500 LYS A 426 -12.35 -45.19 REMARK 500 MET A 428 -7.98 78.76 REMARK 500 TYR A 479 34.04 -93.79 REMARK 500 THR A 480 -165.21 -72.70 REMARK 500 GLU A 531 -70.90 -84.84 REMARK 500 MET A 558 4.72 -62.19 REMARK 500 PRO A 594 150.05 -47.93 REMARK 500 LYS A 597 80.59 49.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 DBREF 1BHY A 117 598 UNP Q51225 Q51225_NEIME 112 593 SEQADV 1BHY ALA A 498 UNP Q51225 GLY 493 CONFLICT SEQADV 1BHY TYR A 553 UNP Q51225 CYS 548 CONFLICT SEQRES 1 A 482 GLY SER ALA ASP ALA GLU TYR ASP VAL VAL VAL LEU GLY SEQRES 2 A 482 GLY GLY PRO GLY GLY TYR SER ALA ALA PHE ALA ALA ALA SEQRES 3 A 482 ASP GLU GLY LEU LYS VAL ALA ILE VAL GLU ARG TYR LYS SEQRES 4 A 482 THR LEU GLY GLY VAL CYS LEU ASN VAL GLY CYS ILE PRO SEQRES 5 A 482 SER LYS ALA LEU LEU HIS ASN ALA ALA VAL ILE ASP GLU SEQRES 6 A 482 VAL ARG HIS LEU ALA ALA ASN GLY ILE LYS TYR PRO GLU SEQRES 7 A 482 PRO GLU LEU ASP ILE ASP MET LEU ARG ALA TYR LYS ASP SEQRES 8 A 482 GLY VAL VAL SER ARG LEU THR GLY GLY LEU ALA GLY MET SEQRES 9 A 482 ALA LYS SER ARG LYS VAL ASP VAL ILE GLN GLY ASP GLY SEQRES 10 A 482 GLN PHE LEU ASP PRO HIS HIS LEU GLU VAL SER LEU THR SEQRES 11 A 482 ALA GLY ASP ALA TYR GLU GLN ALA ALA PRO THR GLY GLU SEQRES 12 A 482 LYS LYS ILE VAL ALA PHE LYS ASN CYS ILE ILE ALA ALA SEQRES 13 A 482 GLY SER ARG VAL THR LYS LEU PRO PHE ILE PRO GLU ASP SEQRES 14 A 482 PRO ARG ILE ILE ASP SER SER GLY ALA LEU ALA LEU LYS SEQRES 15 A 482 GLU VAL PRO GLY LYS LEU LEU ILE ILE GLY GLY GLY ILE SEQRES 16 A 482 ILE GLY LEU GLU MET GLY THR VAL TYR SER THR LEU GLY SEQRES 17 A 482 SER ARG LEU ASP VAL VAL GLU MET MET ASP GLY LEU MET SEQRES 18 A 482 GLN GLY ALA ASP ARG ASP LEU VAL LYS VAL TRP GLN LYS SEQRES 19 A 482 GLN ASN GLU TYR ARG PHE ASP ASN ILE MET VAL ASN THR SEQRES 20 A 482 LYS THR VAL ALA VAL GLU PRO LYS GLU ASP GLY VAL TYR SEQRES 21 A 482 VAL THR PHE GLU GLY ALA ASN ALA PRO LYS GLU PRO GLN SEQRES 22 A 482 ARG TYR ASP ALA VAL LEU VAL ALA ALA GLY ARG ALA PRO SEQRES 23 A 482 ASN GLY LYS LEU ILE SER ALA GLU LYS ALA GLY VAL ALA SEQRES 24 A 482 VAL THR ASP ARG GLY PHE ILE GLU VAL ASP LYS GLN MET SEQRES 25 A 482 ARG THR ASN VAL PRO HIS ILE TYR ALA ILE GLY ASP ILE SEQRES 26 A 482 VAL GLY GLN PRO MET LEU ALA HIS LYS ALA VAL HIS GLU SEQRES 27 A 482 GLY HIS VAL ALA ALA GLU ASN CYS ALA GLY HIS LYS ALA SEQRES 28 A 482 TYR PHE ASP ALA ARG VAL ILE PRO GLY VAL ALA TYR THR SEQRES 29 A 482 SER PRO GLU VAL ALA TRP VAL GLY GLU THR GLU LEU SER SEQRES 30 A 482 ALA LYS ALA SER ALA ARG LYS ILE THR LYS ALA ASN PHE SEQRES 31 A 482 PRO TRP ALA ALA SER GLY ARG ALA ILE ALA ASN GLY CYS SEQRES 32 A 482 ASP LYS PRO PHE THR LYS LEU ILE PHE ASP ALA GLU THR SEQRES 33 A 482 GLY ARG ILE ILE GLY GLY GLY ILE VAL GLY PRO ASN GLY SEQRES 34 A 482 GLY ASP MET ILE GLY GLU VAL TYR LEU ALA ILE GLU MET SEQRES 35 A 482 GLY CYS ASP ALA ALA ASP ILE GLY LYS THR ILE HIS PRO SEQRES 36 A 482 HIS PRO THR LEU GLY GLU SER ILE GLY MET ALA ALA GLU SEQRES 37 A 482 VAL ALA LEU GLY THR CYS THR ASP LEU PRO PRO GLN LYS SEQRES 38 A 482 LYS HET FAD A 600 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 HELIX 1 1 PRO A 132 ASP A 143 1 12 HELIX 2 2 GLY A 159 VAL A 164 1 6 HELIX 3 3 CYS A 166 ALA A 186 1 21 HELIX 4 4 ILE A 199 SER A 223 1 25 HELIX 5 5 SER A 291 ALA A 296 1 6 HELIX 6 6 ILE A 311 LEU A 323 1 13 HELIX 7 7 ARG A 342 ARG A 355 1 14 HELIX 8 8 GLY A 404 LEU A 406 5 3 HELIX 9 9 ALA A 409 LYS A 411 5 3 HELIX 10 10 GLY A 439 ILE A 441 5 3 HELIX 11 11 ALA A 448 ALA A 463 1 16 HELIX 12 12 GLU A 491 SER A 497 1 7 HELIX 13 13 TRP A 508 ALA A 510 5 3 HELIX 14 14 GLY A 512 ALA A 516 1 5 HELIX 15 15 GLY A 545 GLU A 557 1 13 HELIX 16 16 ALA A 562 GLY A 566 1 5 HELIX 17 17 GLY A 576 LEU A 587 5 12 SHEET 1 A 4 ASP A 120 TYR A 123 0 SHEET 2 A 4 LYS A 260 PHE A 265 1 N ILE A 262 O ALA A 121 SHEET 3 A 4 HIS A 240 LEU A 245 -1 N VAL A 243 O LYS A 261 SHEET 4 A 4 GLY A 231 ASP A 237 -1 N ASP A 237 O HIS A 240 SHEET 1 B 5 ILE A 435 ALA A 437 0 SHEET 2 B 5 ASN A 267 ILE A 270 1 N CYS A 268 O TYR A 436 SHEET 3 B 5 VAL A 125 LEU A 128 1 N VAL A 126 O ASN A 267 SHEET 4 B 5 VAL A 148 GLU A 152 1 N ALA A 149 O VAL A 125 SHEET 5 B 5 ASP A 227 GLN A 230 1 N ASP A 227 O ILE A 150 SHEET 1 C 2 SER A 274 VAL A 276 0 SHEET 2 C 2 ARG A 400 PRO A 402 -1 N ALA A 401 O ARG A 275 SHEET 1 D 2 LEU A 305 ILE A 307 0 SHEET 2 D 2 VAL A 394 VAL A 396 1 N LEU A 395 O LEU A 305 SHEET 1 E 3 GLN A 389 TYR A 391 0 SHEET 2 E 3 GLY A 374 GLU A 380 -1 N VAL A 377 O GLN A 389 SHEET 3 E 3 LYS A 364 LYS A 371 -1 N LYS A 371 O GLY A 374 SHEET 1 F 5 GLY A 476 ALA A 478 0 SHEET 2 F 5 VAL A 484 GLY A 488 -1 N TRP A 486 O GLY A 476 SHEET 3 F 5 ILE A 535 VAL A 541 -1 N ILE A 540 O ALA A 485 SHEET 4 F 5 PHE A 523 ASP A 529 -1 N ILE A 527 O ILE A 536 SHEET 5 F 5 ILE A 501 PRO A 507 -1 N PHE A 506 O THR A 524 SHEET 1 G 2 THR A 246 ALA A 250 0 SHEET 2 G 2 GLN A 253 PRO A 256 -1 N ALA A 255 O ALA A 247 SHEET 1 H 2 LEU A 327 VAL A 330 0 SHEET 2 H 2 PHE A 356 MET A 360 1 N ASP A 357 O LEU A 327 SSBOND 1 CYS A 161 CYS A 166 1555 1555 2.05 CISPEP 1 GLN A 444 PRO A 445 0 -2.95 CISPEP 2 SER A 481 PRO A 482 0 -2.98 CISPEP 3 HIS A 572 PRO A 573 0 -2.38 SITE 1 AC1 35 LEU A 128 GLY A 129 GLY A 130 GLY A 131 SITE 2 AC1 35 PRO A 132 GLY A 133 VAL A 151 GLU A 152 SITE 3 AC1 35 ARG A 153 TYR A 154 GLY A 159 VAL A 160 SITE 4 AC1 35 CYS A 161 VAL A 164 GLY A 165 CYS A 166 SITE 5 AC1 35 LYS A 170 GLY A 231 ASP A 232 GLY A 233 SITE 6 AC1 35 TYR A 251 ALA A 271 ALA A 272 GLY A 273 SITE 7 AC1 35 LEU A 295 ILE A 407 GLY A 439 ASP A 440 SITE 8 AC1 35 MET A 446 LEU A 447 ALA A 448 HIS A 449 SITE 9 AC1 35 TYR A 479 HIS A 572 PRO A 573 CRYST1 140.620 140.620 77.020 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012984 0.00000