HEADER COMPLEX(ONCOGENE PROTEIN/EXCHANGE FACTOR06-JUL-98 1BKD TITLE COMPLEX OF HUMAN H-RAS WITH HUMAN SOS-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-RAS; COMPND 3 CHAIN: R; COMPND 4 FRAGMENT: RESIDUES 1-166; COMPND 5 SYNONYM: P21; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SON OF SEVENLESS-1; COMPND 9 CHAIN: S; COMPND 10 FRAGMENT: RAS GUANINE NUCLEOTIDE EXCHANGE FACTOR FRAGMENT; COMPND 11 SYNONYM: SOS; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: BRAIN; SOURCE 7 CELLULAR_LOCATION: CYTOPLASM; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PROEX HTB; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 CELL_LINE: BL21; SOURCE 17 ORGAN: BRAIN; SOURCE 18 CELLULAR_LOCATION: MEMBRANE-ANCHORED; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PROEX HTB KEYWDS COMPLEX (ONCOGENE PROTEIN-EXCHANGE FACTOR), SMALL GTPASE, EXCHANGE KEYWDS 2 FACTOR, COMPLEX(ONCOGENE PROTEIN-EXCHANGE FACTOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BORIACK-SJODIN,S.M.MARGARIT,D.B.SAGI,J.KURIYAN REVDAT 3 07-FEB-24 1BKD 1 REMARK REVDAT 2 24-FEB-09 1BKD 1 VERSN REVDAT 1 13-JAN-99 1BKD 0 JRNL AUTH P.A.BORIACK-SJODIN,S.M.MARGARIT,D.BAR-SAGI,J.KURIYAN JRNL TITL THE STRUCTURAL BASIS OF THE ACTIVATION OF RAS BY SOS. JRNL REF NATURE V. 394 337 1998 JRNL REFN ISSN 0028-0836 JRNL PMID 9690470 JRNL DOI 10.1038/28548 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 26502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 26 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 937 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.4840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 48 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4984 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.19100 REMARK 3 B22 (A**2) : -6.19100 REMARK 3 B33 (A**2) : 12.38200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.260 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : STANDARD REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 10.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000171857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26562 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.53000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MULTIPLE ISOMORPHOUS REMARK 200 REPLACEMENT REMARK 200 SOFTWARE USED: CNS 0.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 71.35000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 103.95000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 71.35000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 103.95000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 71.35000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 103.95000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 71.35000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 103.95000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.35000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 103.95000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.35000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 103.95000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 71.35000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 103.95000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 71.35000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 71.35000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 142.70000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 142.70000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 142.70000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 142.70000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN S 591 REMARK 465 MET S 592 REMARK 465 GLN S 593 REMARK 465 PRO S 594 REMARK 465 LYS S 595 REMARK 465 ALA S 596 REMARK 465 GLU S 654 REMARK 465 PRO S 655 REMARK 465 THR S 656 REMARK 465 GLU S 657 REMARK 465 ALA S 658 REMARK 465 ASP S 659 REMARK 465 ARG S 660 REMARK 465 ILE S 661 REMARK 465 ALA S 662 REMARK 465 ILE S 663 REMARK 465 GLU S 664 REMARK 465 ASN S 665 REMARK 465 GLY S 666 REMARK 465 ASP S 667 REMARK 465 GLN S 668 REMARK 465 PRO S 669 REMARK 465 LEU S 670 REMARK 465 SER S 671 REMARK 465 ALA S 672 REMARK 465 GLU S 673 REMARK 465 LEU S 674 REMARK 465 LYS S 675 REMARK 465 ILE S 742 REMARK 465 ALA S 743 REMARK 465 ARG S 744 REMARK 465 ASP S 745 REMARK 465 ASN S 746 REMARK 465 GLY S 747 REMARK 465 PRO S 748 REMARK 465 GLY S 749 REMARK 465 HIS S 750 REMARK 465 ASN S 751 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS R 27 CG ND1 CD2 CE1 NE2 REMARK 480 PHE R 28 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ASP R 30 CG OD1 OD2 REMARK 480 ARG S 568 NE CZ NH1 NH2 REMARK 480 LEU S 569 CG CD1 CD2 REMARK 480 ASP S 573 CG OD1 OD2 REMARK 480 TYR S 575 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLU S 579 CG CD OE1 OE2 REMARK 480 LYS S 636 CG CD CE NZ REMARK 480 ARG S 676 CG CD NE CZ NH1 NH2 REMARK 480 LYS S 679 CG CD CE NZ REMARK 480 GLU S 680 CG CD OE1 OE2 REMARK 480 ARG S 722 CG CD NE CZ NH1 NH2 REMARK 480 LYS S 724 CG CD CE NZ REMARK 480 LYS S 735 CG CD CE NZ REMARK 480 GLN S 738 CG CD OE1 NE2 REMARK 480 ARG S 767 CG CD NE CZ NH1 NH2 REMARK 480 LYS S 899 CG CD CE NZ REMARK 480 ARG S 920 NE CZ NH1 NH2 REMARK 480 LYS S 949 CE NZ REMARK 480 LYS S 963 CD CE NZ REMARK 480 LYS S 1036 CD CE NZ REMARK 480 ARG S 1041 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO R 34 26.68 -65.59 REMARK 500 THR R 58 28.00 -73.52 REMARK 500 ALA R 66 0.11 -69.43 REMARK 500 GLN R 165 22.66 -77.20 REMARK 500 ALA S 572 8.78 -68.76 REMARK 500 ASP S 573 -25.50 72.56 REMARK 500 TYR S 575 19.62 -150.13 REMARK 500 ARG S 576 -168.33 -161.36 REMARK 500 ARG S 632 -9.58 -56.88 REMARK 500 TYR S 681 -55.57 -138.56 REMARK 500 GLN S 755 -72.85 -58.44 REMARK 500 HIS S 764 -119.21 -123.74 REMARK 500 SER S 807 28.95 48.87 REMARK 500 ASP S 813 33.27 -98.77 REMARK 500 PRO S 894 151.23 -47.96 REMARK 500 GLU S 909 153.73 -49.08 REMARK 500 HIS S 951 29.92 45.96 REMARK 500 ASN S 976 -74.47 -72.22 REMARK 500 ASN S1020 -74.53 -1.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 1BKD R 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 1BKD S 568 1044 UNP Q07889 SOS1_HUMAN 568 1044 SEQRES 1 R 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 R 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 R 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 R 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 R 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 R 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 R 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 R 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 R 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 R 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 R 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 R 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 R 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 S 477 ARG LEU PRO SER ALA ASP VAL TYR ARG PHE ALA GLU PRO SEQRES 2 S 477 ASP SER GLU GLU ASN ILE ILE PHE GLU GLU ASN MET GLN SEQRES 3 S 477 PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA GLY THR VAL SEQRES 4 S 477 ILE LYS LEU ILE GLU ARG LEU THR TYR HIS MET TYR ALA SEQRES 5 S 477 ASP PRO ASN PHE VAL ARG THR PHE LEU THR THR TYR ARG SEQRES 6 S 477 SER PHE CYS LYS PRO GLN GLU LEU LEU SER LEU ILE ILE SEQRES 7 S 477 GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO THR GLU ALA SEQRES 8 S 477 ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN PRO LEU SER SEQRES 9 S 477 ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR ILE GLN PRO SEQRES 10 S 477 VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG HIS TRP VAL SEQRES 11 S 477 GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP ALA TYR LEU SEQRES 12 S 477 LEU GLN ARG MET GLU GLU PHE ILE GLY THR VAL ARG GLY SEQRES 13 S 477 LYS ALA MET LYS LYS TRP VAL GLU SER ILE THR LYS ILE SEQRES 14 S 477 ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN GLY PRO GLY SEQRES 15 S 477 HIS ASN ILE THR PHE GLN SER SER PRO PRO THR VAL GLU SEQRES 16 S 477 TRP HIS ILE SER ARG PRO GLY HIS ILE GLU THR PHE ASP SEQRES 17 S 477 LEU LEU THR LEU HIS PRO ILE GLU ILE ALA ARG GLN LEU SEQRES 18 S 477 THR LEU LEU GLU SER ASP LEU TYR ARG ALA VAL GLN PRO SEQRES 19 S 477 SER GLU LEU VAL GLY SER VAL TRP THR LYS GLU ASP LYS SEQRES 20 S 477 GLU ILE ASN SER PRO ASN LEU LEU LYS MET ILE ARG HIS SEQRES 21 S 477 THR THR ASN LEU THR LEU TRP PHE GLU LYS CYS ILE VAL SEQRES 22 S 477 GLU THR GLU ASN LEU GLU GLU ARG VAL ALA VAL VAL SER SEQRES 23 S 477 ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN GLU LEU ASN SEQRES 24 S 477 ASN PHE ASN GLY VAL LEU GLU VAL VAL SER ALA MET ASN SEQRES 25 S 477 SER SER PRO VAL TYR ARG LEU ASP HIS THR PHE GLU GLN SEQRES 26 S 477 ILE PRO SER ARG GLN LYS LYS ILE LEU GLU GLU ALA HIS SEQRES 27 S 477 GLU LEU SER GLU ASP HIS TYR LYS LYS TYR LEU ALA LYS SEQRES 28 S 477 LEU ARG SER ILE ASN PRO PRO CYS VAL PRO PHE PHE GLY SEQRES 29 S 477 ILE TYR LEU THR ASN ILE LEU LYS THR GLU GLU GLY ASN SEQRES 30 S 477 PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU LEU ILE ASN SEQRES 31 S 477 PHE SER LYS ARG ARG LYS VAL ALA GLU ILE THR GLY GLU SEQRES 32 S 477 ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS LEU ARG VAL SEQRES 33 S 477 GLU SER ASP ILE LYS ARG PHE PHE GLU ASN LEU ASN PRO SEQRES 34 S 477 MET GLY ASN SER MET GLU LYS GLU PHE THR ASP TYR LEU SEQRES 35 S 477 PHE ASN LYS SER LEU GLU ILE GLU PRO ARG ASN PRO LYS SEQRES 36 S 477 PRO LEU PRO ARG PHE PRO LYS LYS TYR SER TYR PRO LEU SEQRES 37 S 477 LYS SER PRO GLY VAL ARG PRO SER ASN FORMUL 3 HOH *26(H2 O) HELIX 1 1 LYS R 16 LEU R 23 5 8 HELIX 2 2 SER R 65 THR R 74 5 10 HELIX 3 3 THR R 87 GLU R 91 1 5 HELIX 4 4 ILE R 93 VAL R 103 1 11 HELIX 5 5 SER R 127 TYR R 137 1 11 HELIX 6 6 VAL R 152 ARG R 164 1 13 HELIX 7 7 VAL S 606 THR S 614 1 9 HELIX 8 8 PRO S 621 SER S 633 1 13 HELIX 9 9 PRO S 637 PHE S 648 1 12 HELIX 10 10 ILE S 682 HIS S 699 1 18 HELIX 11 11 ALA S 708 THR S 720 1 13 HELIX 12 12 LYS S 724 ARG S 739 1 16 HELIX 13 13 PRO S 781 ARG S 797 1 17 HELIX 14 14 PRO S 819 VAL S 840 1 22 HELIX 15 15 LEU S 845 GLU S 864 1 20 HELIX 16 16 PHE S 868 MET S 878 1 11 HELIX 17 17 ASP S 887 GLN S 892 1 6 HELIX 18 18 SER S 895 LEU S 907 1 13 HELIX 19 19 GLU S 909 SER S 921 1 13 HELIX 20 20 GLY S 931 GLU S 942 1 12 HELIX 21 21 PHE S 958 GLN S 975 1 18 HELIX 22 22 SER S 985 GLU S 992 1 8 HELIX 23 23 GLU S 1002 ILE S 1016 1 15 SHEET 1 A 6 TYR R 141 SER R 145 0 SHEET 2 A 6 MET R 111 LYS R 117 1 N LEU R 113 O ILE R 142 SHEET 3 A 6 GLY R 77 ALA R 83 1 N PHE R 78 O VAL R 112 SHEET 4 A 6 THR R 2 GLY R 10 1 N VAL R 7 O GLY R 77 SHEET 5 A 6 GLU R 49 LEU R 56 1 N LEU R 52 O THR R 2 SHEET 6 A 6 ARG R 41 ILE R 46 -1 N ILE R 46 O GLU R 49 SHEET 1 B 2 VAL S 947 ARG S 950 0 SHEET 2 B 2 LYS S 953 ILE S 956 -1 N LEU S 955 O LEU S 948 CISPEP 1 PRO S 924 PRO S 925 0 0.09 CRYST1 142.700 142.700 207.900 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007008 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004810 0.00000