HEADER IMMUNE SYSTEM 15-APR-99 1BM3 TITLE IMMUNOGLOBULIN OPG2 FAB-PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN OPG2 FAB, CONSTANT DOMAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: CONSTANT DOMAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IMMUNOGLOBULIN OPG2 FAB, VARIABLE DOMAIN; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: VARIABLE DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.KODANDAPANI,L.VEERAPANDIAN,C.Z.NI,C.-K.CHIOU,R.WHITAL,T.J.KUNICKI, AUTHOR 2 K.R.ELY REVDAT 8 09-AUG-23 1BM3 1 SHEET REVDAT 7 27-NOV-19 1BM3 1 JRNL REVDAT 6 04-OCT-17 1BM3 1 REMARK REVDAT 5 24-FEB-09 1BM3 1 VERSN REVDAT 4 01-APR-03 1BM3 1 JRNL REVDAT 3 14-FEB-00 1BM3 1 HEADER SSBOND REVDAT 2 20-APR-99 1BM3 1 JRNL REVDAT 1 20-APR-99 1BM3 0 JRNL AUTH R.KODANDAPANI,L.VEERAPANDIAN,C.Z.NI,C.K.CHIOU,R.M.WHITTAL, JRNL AUTH 2 T.J.KUNICKI,K.R.ELY JRNL TITL CONFORMATIONAL CHANGE IN AN ANTI-INTEGRIN ANTIBODY: JRNL TITL 2 STRUCTURE OF OPG2 FAB BOUND TO A BETA 3 PEPTIDE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 251 61 1998 JRNL REFN ISSN 0006-291X JRNL PMID 9790907 JRNL DOI 10.1006/BBRC.1998.9380 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.KODANDAPANI,B.VEERAPANDIAN,T.J.KUNICKI,K.R.ELY REMARK 1 TITL CRYSTAL STRUCTURE OF THE OPG2 FAB. AN ANTIRECEPTOR ANTIBODY REMARK 1 TITL 2 THAT MIMICS AN RGD CELL ADHESION SITE. REMARK 1 REF J.BIOL.CHEM. V. 270 2268 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 7836460 REMARK 1 DOI 10.1074/JBC.270.5.2268 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 20334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 0.062 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1BM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-92 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NILSEN, UCSD-SYSTEM REMARK 200 DATA SCALING SOFTWARE : X-GEN (HOWARD, NILSEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20334 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1OPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE, PH6.5, 0.2M CALCIUM REMARK 280 ACETATE AND 16% PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: A 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X,Y+1/2,Z+1/2 REMARK 290 4555 -X,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 -16.90414 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.76099 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 -16.90414 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 35.76099 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO H 100 REMARK 465 PHE H 101 REMARK 465 TYR H 102 REMARK 465 ARG H 103 REMARK 465 TYR H 104 REMARK 465 ASP H 105 REMARK 465 GLY H 106 REMARK 465 GLY H 107 REMARK 465 ASN H 108 REMARK 465 TYR H 109 REMARK 465 TYR H 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG H 98 OD1 ASP H 113 2.00 REMARK 500 ND2 ASN L 137 O HOH L 706 2.13 REMARK 500 OG SER L 127 O HOH L 723 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 834 O HOH H 829 2657 1.26 REMARK 500 O HOH L 763 O HOH L 763 2556 1.36 REMARK 500 CA LEU L 181 O HOH H 952 2657 1.53 REMARK 500 CB LEU L 181 O HOH H 952 2657 1.69 REMARK 500 OH TYR H 57 CB SER H 140 1455 1.84 REMARK 500 OE1 GLN L 156 O HOH L 712 2657 1.84 REMARK 500 C LEU L 181 O HOH H 952 2657 1.93 REMARK 500 N THR L 182 O HOH H 952 2657 2.06 REMARK 500 CG LEU L 181 O HOH H 952 2657 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG H 67 NE ARG H 67 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 1 N - CA - CB ANGL. DEV. = 17.2 DEGREES REMARK 500 ASP L 1 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 ASP L 1 OD1 - CG - OD2 ANGL. DEV. = -17.0 DEGREES REMARK 500 ASP L 1 CB - CG - OD1 ANGL. DEV. = 17.4 DEGREES REMARK 500 GLU L 2 CB - CG - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 GLU L 2 OE1 - CD - OE2 ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU L 2 CG - CD - OE2 ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU L 4 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 LEU L 4 CB - CG - CD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 LEU L 11 CA - CB - CG ANGL. DEV. = 40.1 DEGREES REMARK 500 VAL L 13 CA - CB - CG1 ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP L 17 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 LEU L 33 CB - CG - CD2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG L 45 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG L 45 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR L 50 C - N - CA ANGL. DEV. = 17.8 DEGREES REMARK 500 SER L 54 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO L 59 CB - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG L 61 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP L 70 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP L 70 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 LEU L 73 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 SER L 74 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP L 82 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP L 82 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 GLN L 90 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 TRP L 94 CB - CG - CD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 TRP L 94 CB - CG - CD1 ANGL. DEV. = 9.3 DEGREES REMARK 500 LYS L 103 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 GLU L 105 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LYS L 107 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG L 108 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ILE L 117 CG1 - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 GLU L 123 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 GLU L 123 CG - CD - OE1 ANGL. DEV. = 12.7 DEGREES REMARK 500 SER L 127 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 VAL L 132 CA - CB - CG1 ANGL. DEV. = -9.4 DEGREES REMARK 500 LEU L 136 CA - CB - CG ANGL. DEV. = 30.0 DEGREES REMARK 500 SER L 153 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 SER L 153 N - CA - CB ANGL. DEV. = 10.1 DEGREES REMARK 500 SER L 153 CA - CB - OG ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG L 155 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG L 155 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 SER L 162 CA - CB - OG ANGL. DEV. = -22.0 DEGREES REMARK 500 ASP L 165 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP L 167 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU L 179 CB - CG - CD2 ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU L 181 N - CA - CB ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU L 181 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP L 184 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 131 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -119.58 66.80 REMARK 500 ALA L 51 -57.00 68.87 REMARK 500 ASN L 76 -93.94 -69.67 REMARK 500 ASN L 138 73.23 37.60 REMARK 500 PRO L 141 -176.37 -68.29 REMARK 500 SER L 171 -0.58 71.00 REMARK 500 THR L 200 -8.82 -52.42 REMARK 500 ASN L 212 -39.14 -133.63 REMARK 500 ALA H 49 148.87 -173.86 REMARK 500 TYR H 57 93.53 79.80 REMARK 500 CYS H 96 -146.12 -105.28 REMARK 500 THR H 97 151.90 138.54 REMARK 500 SER H 140 50.17 -46.12 REMARK 500 ALA H 141 -52.54 -156.58 REMARK 500 GLN H 143 -158.14 -166.49 REMARK 500 THR H 144 -59.42 -179.38 REMARK 500 MET H 147 85.39 157.70 REMARK 500 PRO H 159 -153.44 -102.01 REMARK 500 SER H 168 54.45 73.01 REMARK 500 GLN H 183 76.35 -106.68 REMARK 500 SER H 184 88.37 39.35 REMARK 500 SER H 197 42.25 -61.63 REMARK 500 SER H 198 78.74 -167.13 REMARK 500 ARG H 200 -164.20 -106.60 REMARK 500 PRO H 201 -12.92 -46.41 REMARK 500 SER H 202 -38.82 -33.07 REMARK 500 HIS H 211 79.60 -112.51 REMARK 500 ILE H 222 -90.29 -87.09 REMARK 500 VAL H 223 140.34 72.69 REMARK 500 PRO H 224 74.58 -63.13 REMARK 500 ARG H 225 -152.32 -105.72 REMARK 500 ASP H 226 144.45 46.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 225 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1BM3 L 1 214 PDB 1BM3 1BM3 1 214 DBREF 1BM3 H 1 227 PDB 1BM3 1BM3 1 227 SEQRES 1 L 214 ASP GLU LEU LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 214 THR PRO GLY ASP SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 L 214 GLN SER ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 L 214 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 L 214 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 L 214 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 L 214 ASN SER TRP PRO LEU THR PHE GLY GLY GLY SER LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 227 GLU VAL GLN LEU VAL GLN SER GLY GLY GLY LEU VAL ASN SEQRES 2 H 227 PRO GLY ARG SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 227 PHE THR PHE SER SER TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 H 227 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA ALA ILE SER SEQRES 5 H 227 GLY GLY GLY THR TYR ILE HIS TYR PRO ASP SER VAL LYS SEQRES 6 H 227 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN ASN SEQRES 7 H 227 LEU TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 227 ALA LEU TYR TYR CYS THR ARG HIS PRO PHE TYR ARG TYR SEQRES 9 H 227 ASP GLY GLY ASN TYR TYR ALA MET ASP HIS TRP GLY GLN SEQRES 10 H 227 GLY THR SER VAL THR VAL SER ALA ALA LYS THR THR PRO SEQRES 11 H 227 PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN SEQRES 12 H 227 THR ASN SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY SEQRES 13 H 227 TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SEQRES 14 H 227 SER LEU SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 227 GLN SER ASP LEU TYR THR LEU SER SER SER VAL THR VAL SEQRES 16 H 227 PRO SER SER PRO ARG PRO SER GLU THR VAL THR CYS ASN SEQRES 17 H 227 VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS SEQRES 18 H 227 ILE VAL PRO ARG ASP CYS FORMUL 3 HOH *313(H2 O) HELIX 1 1 TYR L 50 SER L 52 5 3 HELIX 2 2 THR L 80 ASP L 82 5 3 HELIX 3 3 LEU L 125 SER L 127 5 3 HELIX 4 4 LYS L 183 ARG L 188 1 6 HELIX 5 5 PHE H 29 SER H 31 5 3 HELIX 6 6 SER H 88 ASP H 90 5 3 HELIX 7 7 ASN H 167 GLY H 169 5 3 HELIX 8 8 PRO H 212 SER H 214 5 3 SHEET 1 A 4 LEU L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N ARG L 24 O THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 N ILE L 75 O VAL L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 67 O ASP L 70 SHEET 1 B 3 MET L 85 GLN L 90 0 SHEET 2 B 3 LEU L 33 GLN L 38 -1 N GLN L 38 O MET L 85 SHEET 3 B 3 ARG L 45 ILE L 48 -1 N ILE L 48 O TRP L 35 SHEET 1 C 4 THR L 114 PHE L 118 0 SHEET 2 C 4 GLY L 129 ASN L 137 -1 N ASN L 137 O THR L 114 SHEET 3 C 4 MET L 175 THR L 182 -1 N LEU L 181 O ALA L 130 SHEET 4 C 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 D 4 SER L 153 ARG L 155 0 SHEET 2 D 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 D 4 SER L 191 HIS L 198 -1 N THR L 197 O ASN L 145 SHEET 4 D 4 ILE L 205 ASN L 210 -1 N PHE L 209 O TYR L 192 SHEET 1 E 4 GLN H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 E 4 ASN H 78 MET H 83 -1 N MET H 83 O LEU H 18 SHEET 4 E 4 PHE H 68 ASP H 73 -1 N ASP H 73 O ASN H 78 SHEET 1 F 4 THR H 119 VAL H 121 0 SHEET 2 F 4 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 119 SHEET 3 F 4 MET H 34 GLN H 39 -1 N GLN H 39 O LEU H 93 SHEET 4 F 4 LEU H 45 ILE H 51 -1 N ILE H 51 O MET H 34 SHEET 1 G 3 MET H 147 TYR H 157 0 SHEET 2 G 3 TYR H 187 PRO H 196 -1 N VAL H 195 O VAL H 148 SHEET 3 G 3 VAL H 175 PHE H 178 -1 N PHE H 178 O SER H 190 SHEET 1 H 3 THR H 163 TRP H 166 0 SHEET 2 H 3 THR H 206 HIS H 211 -1 N ALA H 210 O THR H 163 SHEET 3 H 3 THR H 216 LYS H 221 -1 N LYS H 220 O CYS H 207 SHEET 1 I 2 VAL H 181 GLN H 183 0 SHEET 2 I 2 LEU H 186 THR H 188 -1 N THR H 188 O VAL H 181 SHEET 1 J 2 THR H 97 HIS H 99 0 SHEET 2 J 2 MET H 112 TRP H 115 -1 N HIS H 114 O ARG H 98 SSBOND 1 CYS L 23 CYS L 88 1555 1555 1.95 SSBOND 2 CYS L 134 CYS L 194 1555 1555 1.94 SSBOND 3 CYS L 214 CYS H 227 1555 1555 2.02 SSBOND 4 CYS H 22 CYS H 96 1555 1555 1.98 SSBOND 5 CYS H 152 CYS H 207 1555 1555 1.97 CISPEP 1 SER L 7 PRO L 8 0 -0.60 CISPEP 2 TRP L 94 PRO L 95 0 1.17 CISPEP 3 TYR L 140 PRO L 141 0 4.41 CISPEP 4 PHE H 158 PRO H 159 0 -1.33 CISPEP 5 GLU H 160 PRO H 161 0 -0.19 CISPEP 6 SER H 198 PRO H 199 0 9.54 CRYST1 74.110 90.050 79.110 90.00 115.30 90.00 A 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013493 0.000000 0.006378 0.00000 SCALE2 0.000000 0.011105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013982 0.00000