HEADER HORMONE/GROWTH FACTOR 30-JUL-98 1BOE TITLE STRUCTURE OF THE IGF BINDING DOMAIN OF THE INSULIN-LIKE GROWTH FACTOR- TITLE 2 BINDING PROTEIN-5 (IGFBP-5): IMPLICATIONS FOR IGF AND IGF-I RECEPTOR TITLE 3 INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN-5 COMPND 3 (IGFBP-5)); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: BINDING DOMAIN; COMPND 6 SYNONYM: MINI-IGFBP-5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS MINI-IGFBP-5, IGFBP-5, IGF, INSULIN-LIKE GROWTH FACTOR BINDING KEYWDS 2 PROTEIN, HORMONE-GROWTH FACTOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.KALUS,M.ZWECKSTETTER,C.RENNER,Y.SANCHEZ,J.GEORGESCU,M.GROL, AUTHOR 2 D.DEMUTH,C.SCHUMACHERDONY,K.LANG,T.H.HOLAK REVDAT 5 16-FEB-22 1BOE 1 REMARK REVDAT 4 24-FEB-09 1BOE 1 VERSN REVDAT 3 01-APR-03 1BOE 1 JRNL REVDAT 2 22-DEC-99 1BOE 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 16-DEC-98 1BOE 0 JRNL AUTH W.KALUS,M.ZWECKSTETTER,C.RENNER,Y.SANCHEZ,J.GEORGESCU, JRNL AUTH 2 M.GROL,D.DEMUTH,R.SCHUMACHER,C.DONY,K.LANG,T.A.HOLAK JRNL TITL STRUCTURE OF THE IGF-BINDING DOMAIN OF THE INSULIN-LIKE JRNL TITL 2 GROWTH FACTOR-BINDING PROTEIN-5 (IGFBP-5): IMPLICATIONS FOR JRNL TITL 3 IGF AND IGF-I RECEPTOR INTERACTIONS. JRNL REF EMBO J. V. 17 6558 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9822601 JRNL DOI 10.1093/EMBOJ/17.22.6558 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 1BOE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008124. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX750 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR REMARK 210 METHOD USED : SIMUALTED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 TYR A 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H VAL A 22 O LEU A 46 1.54 REMARK 500 O GLY A 21 H THR A 24 1.58 REMARK 500 SG CYS A 27 SG CYS A 53 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 14 172.62 -54.13 REMARK 500 1 ALA A 15 -154.63 -100.19 REMARK 500 1 CYS A 20 -152.46 -140.85 REMARK 500 1 THR A 24 -138.82 -98.52 REMARK 500 1 CYS A 27 163.57 -42.28 REMARK 500 1 ALA A 28 134.14 -29.17 REMARK 500 1 GLN A 29 -74.09 -34.33 REMARK 500 1 GLU A 39 -72.65 -87.20 REMARK 500 1 GLU A 40 -95.41 -166.87 REMARK 500 1 LYS A 41 59.26 -146.82 REMARK 500 1 LEU A 46 33.39 -86.34 REMARK 500 1 ASN A 55 152.96 -43.48 REMARK 500 1 GLU A 56 40.26 -86.87 REMARK 500 1 LYS A 57 -71.57 -91.43 REMARK 500 2 LEU A 14 170.98 -54.93 REMARK 500 2 ALA A 15 -166.97 -105.67 REMARK 500 2 CYS A 20 -151.43 -140.24 REMARK 500 2 THR A 24 -135.58 -98.61 REMARK 500 2 CYS A 27 163.85 -42.33 REMARK 500 2 ALA A 28 136.52 -29.27 REMARK 500 2 GLN A 29 -76.86 -33.79 REMARK 500 2 ARG A 36 176.62 -53.79 REMARK 500 2 GLN A 37 62.26 -156.77 REMARK 500 2 ASP A 38 -110.13 -133.08 REMARK 500 2 GLU A 40 -146.42 -107.18 REMARK 500 2 LYS A 41 77.94 -118.69 REMARK 500 2 HIS A 44 38.58 -170.49 REMARK 500 2 ALA A 45 -56.55 -140.93 REMARK 500 2 ARG A 50 17.32 -152.76 REMARK 500 2 GLU A 56 40.04 -86.73 REMARK 500 2 LYS A 57 -73.20 -101.47 REMARK 500 3 LEU A 14 179.06 -55.39 REMARK 500 3 ALA A 15 -148.03 -105.54 REMARK 500 3 CYS A 20 -149.66 -140.27 REMARK 500 3 THR A 24 -130.98 -98.43 REMARK 500 3 CYS A 27 163.28 -41.53 REMARK 500 3 ALA A 28 135.64 -28.78 REMARK 500 3 GLN A 29 -75.37 -33.90 REMARK 500 3 GLU A 40 40.09 -83.77 REMARK 500 3 LYS A 41 65.16 166.96 REMARK 500 3 HIS A 44 40.82 -172.82 REMARK 500 3 ALA A 45 -51.16 -141.22 REMARK 500 3 GLU A 56 40.46 -88.87 REMARK 500 3 LYS A 57 -67.31 -100.65 REMARK 500 4 LEU A 14 170.86 -54.93 REMARK 500 4 ALA A 15 -155.12 -104.95 REMARK 500 4 CYS A 20 -146.43 -141.52 REMARK 500 4 THR A 24 -130.35 -98.19 REMARK 500 4 CYS A 27 163.03 -41.22 REMARK 500 4 ALA A 28 135.44 -28.61 REMARK 500 REMARK 500 THIS ENTRY HAS 296 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 32 0.32 SIDE CHAIN REMARK 500 1 ARG A 36 0.26 SIDE CHAIN REMARK 500 1 ARG A 50 0.27 SIDE CHAIN REMARK 500 2 ARG A 26 0.24 SIDE CHAIN REMARK 500 2 ARG A 32 0.32 SIDE CHAIN REMARK 500 2 ARG A 36 0.32 SIDE CHAIN REMARK 500 2 ARG A 50 0.27 SIDE CHAIN REMARK 500 3 ARG A 26 0.31 SIDE CHAIN REMARK 500 3 ARG A 32 0.31 SIDE CHAIN REMARK 500 3 ARG A 36 0.28 SIDE CHAIN REMARK 500 3 ARG A 50 0.23 SIDE CHAIN REMARK 500 4 ARG A 26 0.31 SIDE CHAIN REMARK 500 4 ARG A 32 0.26 SIDE CHAIN REMARK 500 4 ARG A 36 0.29 SIDE CHAIN REMARK 500 4 ARG A 50 0.29 SIDE CHAIN REMARK 500 5 ARG A 26 0.24 SIDE CHAIN REMARK 500 5 ARG A 32 0.21 SIDE CHAIN REMARK 500 5 ARG A 36 0.19 SIDE CHAIN REMARK 500 5 ARG A 50 0.29 SIDE CHAIN REMARK 500 6 ARG A 26 0.31 SIDE CHAIN REMARK 500 6 ARG A 32 0.32 SIDE CHAIN REMARK 500 6 ARG A 36 0.30 SIDE CHAIN REMARK 500 6 ARG A 50 0.31 SIDE CHAIN REMARK 500 7 ARG A 26 0.12 SIDE CHAIN REMARK 500 7 ARG A 32 0.15 SIDE CHAIN REMARK 500 7 ARG A 36 0.31 SIDE CHAIN REMARK 500 7 ARG A 50 0.26 SIDE CHAIN REMARK 500 8 ARG A 26 0.30 SIDE CHAIN REMARK 500 8 ARG A 32 0.26 SIDE CHAIN REMARK 500 8 ARG A 36 0.29 SIDE CHAIN REMARK 500 8 ARG A 50 0.16 SIDE CHAIN REMARK 500 9 ARG A 26 0.22 SIDE CHAIN REMARK 500 9 ARG A 32 0.27 SIDE CHAIN REMARK 500 9 ARG A 36 0.25 SIDE CHAIN REMARK 500 9 ARG A 50 0.24 SIDE CHAIN REMARK 500 10 ARG A 26 0.21 SIDE CHAIN REMARK 500 10 ARG A 32 0.29 SIDE CHAIN REMARK 500 10 ARG A 36 0.26 SIDE CHAIN REMARK 500 10 ARG A 50 0.31 SIDE CHAIN REMARK 500 11 ARG A 26 0.27 SIDE CHAIN REMARK 500 11 ARG A 32 0.29 SIDE CHAIN REMARK 500 11 ARG A 36 0.17 SIDE CHAIN REMARK 500 11 ARG A 50 0.23 SIDE CHAIN REMARK 500 12 ARG A 26 0.29 SIDE CHAIN REMARK 500 12 ARG A 32 0.24 SIDE CHAIN REMARK 500 12 ARG A 36 0.25 SIDE CHAIN REMARK 500 12 ARG A 50 0.14 SIDE CHAIN REMARK 500 13 ARG A 26 0.31 SIDE CHAIN REMARK 500 13 ARG A 32 0.11 SIDE CHAIN REMARK 500 13 ARG A 50 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 77 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: IBS REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: HYDROPHOBIC BINDING SITE TO IGF DBREF 1BOE A 13 59 UNP P24593 IBP5_HUMAN 60 106 SEQRES 1 A 47 ALA LEU ALA GLU GLY GLN SER CYS GLY VAL TYR THR GLU SEQRES 2 A 47 ARG CYS ALA GLN GLY LEU ARG CYS LEU PRO ARG GLN ASP SEQRES 3 A 47 GLU GLU LYS PRO LEU HIS ALA LEU LEU HIS GLY ARG GLY SEQRES 4 A 47 VAL CYS LEU ASN GLU LYS SER TYR SHEET 1 A 2 LEU A 31 LEU A 34 0 SHEET 2 A 2 VAL A 52 ASN A 55 -1 N LEU A 54 O ARG A 32 SSBOND 1 CYS A 20 CYS A 33 1555 1555 2.02 SITE 1 IBS 3 VAL A 22 LEU A 46 LEU A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1