data_1BRF # _entry.id 1BRF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1BRF pdb_00001brf 10.2210/pdb1brf/pdb RCSB RCSB008219 ? ? WWPDB D_1000008219 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-09-02 2 'Structure model' 1 1 2007-10-21 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1BRF _pdbx_database_status.recvd_initial_deposition_date 1998-08-24 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bau, R.' 1 'Rees, D.C.' 2 'Kurtz, D.M.' 3 'Scott, R.A.' 4 'Huang, H.' 5 'Adams, M.W.W.' 6 'Eidsness, M.K.' 7 # _citation.id primary _citation.title ;Crystal Structure of Rubredoxin from Pyrococcus Furiosus at 0.95 Angstroms Resolution, and the structures of N-terminal methionine and formylmethionine variants of Pf Rd. Contributions of N-terminal interactions to thermostability ; _citation.journal_abbrev J.BIOL.INORG.CHEM. _citation.journal_volume 3 _citation.page_first 484 _citation.page_last 493 _citation.year 1998 _citation.journal_id_ASTM JJBCFA _citation.country GW _citation.journal_id_ISSN 0949-8257 _citation.journal_id_CSD 2154 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bau, R.' 1 ? primary 'Rees, D.C.' 2 ? primary 'Kurtz, D.M.' 3 ? primary 'Scott, R.A.' 4 ? primary 'Huang, H.' 5 ? primary 'Adams, M.W.W.' 6 ? primary 'Eidsness, M.K.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PROTEIN (RUBREDOXIN)' 5900.532 1 ? ? ? ? 2 non-polymer syn 'FE (III) ION' 55.845 1 ? ? ? ? 3 water nat water 18.015 186 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PF RD' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_seq_one_letter_code_can AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLED _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'FE (III) ION' FE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 TRP n 1 4 VAL n 1 5 CYS n 1 6 LYS n 1 7 ILE n 1 8 CYS n 1 9 GLY n 1 10 TYR n 1 11 ILE n 1 12 TYR n 1 13 ASP n 1 14 GLU n 1 15 ASP n 1 16 ALA n 1 17 GLY n 1 18 ASP n 1 19 PRO n 1 20 ASP n 1 21 ASN n 1 22 GLY n 1 23 ILE n 1 24 SER n 1 25 PRO n 1 26 GLY n 1 27 THR n 1 28 LYS n 1 29 PHE n 1 30 GLU n 1 31 GLU n 1 32 LEU n 1 33 PRO n 1 34 ASP n 1 35 ASP n 1 36 TRP n 1 37 VAL n 1 38 CYS n 1 39 PRO n 1 40 ILE n 1 41 CYS n 1 42 GLY n 1 43 ALA n 1 44 PRO n 1 45 LYS n 1 46 SER n 1 47 GLU n 1 48 PHE n 1 49 GLU n 1 50 LYS n 1 51 LEU n 1 52 GLU n 1 53 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Pyrococcus furiosus' _entity_src_nat.pdbx_ncbi_taxonomy_id 2261 _entity_src_nat.genus Pyrococcus _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FE non-polymer . 'FE (III) ION' ? 'Fe 3' 55.845 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ASP 53 53 53 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE 1 54 54 FE FE A . C 3 HOH 1 101 101 HOH HOH A . C 3 HOH 2 102 102 HOH HOH A . C 3 HOH 3 103 103 HOH HOH A . C 3 HOH 4 104 104 HOH HOH A . C 3 HOH 5 105 105 HOH HOH A . C 3 HOH 6 106 106 HOH HOH A . C 3 HOH 7 107 107 HOH HOH A . C 3 HOH 8 108 108 HOH HOH A . C 3 HOH 9 109 109 HOH HOH A . C 3 HOH 10 110 110 HOH HOH A . C 3 HOH 11 111 111 HOH HOH A . C 3 HOH 12 112 112 HOH HOH A . C 3 HOH 13 113 113 HOH HOH A . C 3 HOH 14 114 114 HOH HOH A . C 3 HOH 15 115 115 HOH HOH A . C 3 HOH 16 116 116 HOH HOH A . C 3 HOH 17 117 117 HOH HOH A . C 3 HOH 18 118 118 HOH HOH A . C 3 HOH 19 119 119 HOH HOH A . C 3 HOH 20 120 120 HOH HOH A . C 3 HOH 21 121 121 HOH HOH A . C 3 HOH 22 122 122 HOH HOH A . C 3 HOH 23 123 123 HOH HOH A . C 3 HOH 24 124 124 HOH HOH A . C 3 HOH 25 125 125 HOH HOH A . C 3 HOH 26 126 126 HOH HOH A . C 3 HOH 27 127 127 HOH HOH A . C 3 HOH 28 128 128 HOH HOH A . C 3 HOH 29 129 129 HOH HOH A . C 3 HOH 30 130 130 HOH HOH A . C 3 HOH 31 131 131 HOH HOH A . C 3 HOH 32 132 132 HOH HOH A . C 3 HOH 33 133 133 HOH HOH A . C 3 HOH 34 134 134 HOH HOH A . C 3 HOH 35 135 135 HOH HOH A . C 3 HOH 36 136 136 HOH HOH A . C 3 HOH 37 137 137 HOH HOH A . C 3 HOH 38 138 138 HOH HOH A . C 3 HOH 39 139 139 HOH HOH A . C 3 HOH 40 140 140 HOH HOH A . C 3 HOH 41 141 141 HOH HOH A . C 3 HOH 42 142 142 HOH HOH A . C 3 HOH 43 143 143 HOH HOH A . C 3 HOH 44 144 144 HOH HOH A . C 3 HOH 45 145 145 HOH HOH A . C 3 HOH 46 146 146 HOH HOH A . C 3 HOH 47 147 147 HOH HOH A . C 3 HOH 48 148 148 HOH HOH A . C 3 HOH 49 149 149 HOH HOH A . C 3 HOH 50 150 150 HOH HOH A . C 3 HOH 51 151 151 HOH HOH A . C 3 HOH 52 152 152 HOH HOH A . C 3 HOH 53 153 153 HOH HOH A . C 3 HOH 54 154 154 HOH HOH A . C 3 HOH 55 155 155 HOH HOH A . C 3 HOH 56 156 156 HOH HOH A . C 3 HOH 57 157 157 HOH HOH A . C 3 HOH 58 158 158 HOH HOH A . C 3 HOH 59 159 159 HOH HOH A . C 3 HOH 60 160 160 HOH HOH A . C 3 HOH 61 161 161 HOH HOH A . C 3 HOH 62 162 162 HOH HOH A . C 3 HOH 63 163 163 HOH HOH A . C 3 HOH 64 164 164 HOH HOH A . C 3 HOH 65 165 165 HOH HOH A . C 3 HOH 66 166 166 HOH HOH A . C 3 HOH 67 167 167 HOH HOH A . C 3 HOH 68 168 168 HOH HOH A . C 3 HOH 69 169 169 HOH HOH A . C 3 HOH 70 170 170 HOH HOH A . C 3 HOH 71 171 171 HOH HOH A . C 3 HOH 72 172 172 HOH HOH A . C 3 HOH 73 173 173 HOH HOH A . C 3 HOH 74 174 174 HOH HOH A . C 3 HOH 75 175 175 HOH HOH A . C 3 HOH 76 176 176 HOH HOH A . C 3 HOH 77 177 177 HOH HOH A . C 3 HOH 78 178 178 HOH HOH A . C 3 HOH 79 179 179 HOH HOH A . C 3 HOH 80 180 180 HOH HOH A . C 3 HOH 81 181 181 HOH HOH A . C 3 HOH 82 182 182 HOH HOH A . C 3 HOH 83 183 183 HOH HOH A . C 3 HOH 84 184 184 HOH HOH A . C 3 HOH 85 185 185 HOH HOH A . C 3 HOH 86 186 186 HOH HOH A . C 3 HOH 87 187 187 HOH HOH A . C 3 HOH 88 188 188 HOH HOH A . C 3 HOH 89 201 201 HOH HOH A . C 3 HOH 90 202 202 HOH HOH A . C 3 HOH 91 203 203 HOH HOH A . C 3 HOH 92 204 204 HOH HOH A . C 3 HOH 93 205 205 HOH HOH A . C 3 HOH 94 206 206 HOH HOH A . C 3 HOH 95 207 207 HOH HOH A . C 3 HOH 96 208 208 HOH HOH A . C 3 HOH 97 209 209 HOH HOH A . C 3 HOH 98 210 210 HOH HOH A . C 3 HOH 99 211 211 HOH HOH A . C 3 HOH 100 212 212 HOH HOH A . C 3 HOH 101 213 213 HOH HOH A . C 3 HOH 102 214 214 HOH HOH A . C 3 HOH 103 215 215 HOH HOH A . C 3 HOH 104 216 216 HOH HOH A . C 3 HOH 105 217 217 HOH HOH A . C 3 HOH 106 218 218 HOH HOH A . C 3 HOH 107 219 219 HOH HOH A . C 3 HOH 108 220 220 HOH HOH A . C 3 HOH 109 221 221 HOH HOH A . C 3 HOH 110 222 222 HOH HOH A . C 3 HOH 111 223 223 HOH HOH A . C 3 HOH 112 224 224 HOH HOH A . C 3 HOH 113 225 225 HOH HOH A . C 3 HOH 114 226 226 HOH HOH A . C 3 HOH 115 227 227 HOH HOH A . C 3 HOH 116 228 228 HOH HOH A . C 3 HOH 117 229 229 HOH HOH A . C 3 HOH 118 230 230 HOH HOH A . C 3 HOH 119 231 231 HOH HOH A . C 3 HOH 120 232 232 HOH HOH A . C 3 HOH 121 233 233 HOH HOH A . C 3 HOH 122 234 234 HOH HOH A . C 3 HOH 123 235 235 HOH HOH A . C 3 HOH 124 236 236 HOH HOH A . C 3 HOH 125 237 237 HOH HOH A . C 3 HOH 126 238 238 HOH HOH A . C 3 HOH 127 239 239 HOH HOH A . C 3 HOH 128 240 240 HOH HOH A . C 3 HOH 129 241 241 HOH HOH A . C 3 HOH 130 242 242 HOH HOH A . C 3 HOH 131 243 243 HOH HOH A . C 3 HOH 132 244 244 HOH HOH A . C 3 HOH 133 245 245 HOH HOH A . C 3 HOH 134 246 246 HOH HOH A . C 3 HOH 135 247 247 HOH HOH A . C 3 HOH 136 248 248 HOH HOH A . C 3 HOH 137 249 249 HOH HOH A . C 3 HOH 138 301 301 HOH HOH A . C 3 HOH 139 302 302 HOH HOH A . C 3 HOH 140 303 303 HOH HOH A . C 3 HOH 141 304 304 HOH HOH A . C 3 HOH 142 305 305 HOH HOH A . C 3 HOH 143 306 306 HOH HOH A . C 3 HOH 144 307 307 HOH HOH A . C 3 HOH 145 308 308 HOH HOH A . C 3 HOH 146 309 309 HOH HOH A . C 3 HOH 147 310 310 HOH HOH A . C 3 HOH 148 311 311 HOH HOH A . C 3 HOH 149 312 312 HOH HOH A . C 3 HOH 150 313 313 HOH HOH A . C 3 HOH 151 314 314 HOH HOH A . C 3 HOH 152 315 315 HOH HOH A . C 3 HOH 153 316 316 HOH HOH A . C 3 HOH 154 317 317 HOH HOH A . C 3 HOH 155 318 318 HOH HOH A . C 3 HOH 156 319 319 HOH HOH A . C 3 HOH 157 320 320 HOH HOH A . C 3 HOH 158 321 321 HOH HOH A . C 3 HOH 159 322 322 HOH HOH A . C 3 HOH 160 323 323 HOH HOH A . C 3 HOH 161 324 324 HOH HOH A . C 3 HOH 162 325 325 HOH HOH A . C 3 HOH 163 326 326 HOH HOH A . C 3 HOH 164 327 327 HOH HOH A . C 3 HOH 165 328 328 HOH HOH A . C 3 HOH 166 329 329 HOH HOH A . C 3 HOH 167 330 330 HOH HOH A . C 3 HOH 168 331 331 HOH HOH A . C 3 HOH 169 332 332 HOH HOH A . C 3 HOH 170 333 333 HOH HOH A . C 3 HOH 171 334 334 HOH HOH A . C 3 HOH 172 335 335 HOH HOH A . C 3 HOH 173 336 336 HOH HOH A . C 3 HOH 174 337 337 HOH HOH A . C 3 HOH 175 338 338 HOH HOH A . C 3 HOH 176 339 339 HOH HOH A . C 3 HOH 177 340 340 HOH HOH A . C 3 HOH 178 341 341 HOH HOH A . C 3 HOH 179 342 342 HOH HOH A . C 3 HOH 180 343 343 HOH HOH A . C 3 HOH 181 344 344 HOH HOH A . C 3 HOH 182 345 345 HOH HOH A . C 3 HOH 183 346 346 HOH HOH A . C 3 HOH 184 347 347 HOH HOH A . C 3 HOH 185 348 348 HOH HOH A . C 3 HOH 186 349 349 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL refinement . ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 # _cell.entry_id 1BRF _cell.length_a 34.123 _cell.length_b 34.874 _cell.length_c 43.683 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BRF _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1BRF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.11 _exptl_crystal.description 'KNOWN STRUCTURE (SEE TEXT)' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION AGAINST 3.6M NA,K PHOSPHATE, pH 8.5, vapor diffusion' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'SIEMENS X-1000' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1BRF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 0.95 _reflns.number_obs 32303 _reflns.number_all ? _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.0370000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 1.05 _reflns_shell.percent_possible_all 90 _reflns_shell.Rmerge_I_obs 0.0970000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1BRF _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 28498 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.0 _refine.ls_d_res_high 0.95 _refine.ls_percent_reflns_obs 98.8 _refine.ls_R_factor_obs 0.1320000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1620000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 4433 _refine.ls_number_restraints 4783 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'EVERY 10TH REFLECTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1BRF _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 413 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 186 _refine_hist.number_atoms_total 600 _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1BRF _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1320000 _pdbx_refine.free_R_factor_no_cutoff 0.1620000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1280000 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 25617 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1BRF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1BRF _struct.title 'Rubredoxin (Wild Type) from Pyrococcus Furiosus' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1BRF _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'IRON-SULFUR PROTEIN, HIGH-RESOLUTION STRUCTURE, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_PYRFU _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P24297 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1BRF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 53 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P24297 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 53 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 53 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 19 ? ASN A 21 ? PRO A 19 ASN A 21 5 ? 3 HELX_P HELX_P2 2 PHE A 29 ? GLU A 31 ? PHE A 29 GLU A 31 5 ? 3 HELX_P HELX_P3 3 LYS A 45 ? GLU A 47 ? LYS A 45 GLU A 47 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 5 SG ? ? ? 1_555 B FE . FE ? ? A CYS 5 A FE 54 1_555 ? ? ? ? ? ? ? 2.299 ? ? metalc2 metalc ? ? A CYS 8 SG ? ? ? 1_555 B FE . FE ? ? A CYS 8 A FE 54 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc3 metalc ? ? A CYS 38 SG ? ? ? 1_555 B FE . FE ? ? A CYS 38 A FE 54 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc4 metalc ? ? A CYS 41 SG ? ? ? 1_555 B FE . FE ? ? A CYS 41 A FE 54 1_555 ? ? ? ? ? ? ? 2.280 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 5 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 8 ? A CYS 8 ? 1_555 113.3 ? 2 SG ? A CYS 5 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 38 ? A CYS 38 ? 1_555 110.6 ? 3 SG ? A CYS 8 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 38 ? A CYS 38 ? 1_555 102.5 ? 4 SG ? A CYS 5 ? A CYS 5 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 41 ? 1_555 103.8 ? 5 SG ? A CYS 8 ? A CYS 8 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 41 ? 1_555 114.4 ? 6 SG ? A CYS 38 ? A CYS 38 ? 1_555 FE ? B FE . ? A FE 54 ? 1_555 SG ? A CYS 41 ? A CYS 41 ? 1_555 112.5 ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 11 ? ASP A 13 ? ILE A 11 ASP A 13 A 2 LYS A 2 ? CYS A 5 ? LYS A 2 CYS A 5 A 3 PHE A 48 ? LYS A 50 ? PHE A 48 LYS A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 12 ? O TYR A 12 N TRP A 3 ? N TRP A 3 A 2 3 O VAL A 4 ? O VAL A 4 N GLU A 49 ? N GLU A 49 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FE _struct_site.pdbx_auth_seq_id 54 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE FE A 54' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 5 ? CYS A 5 . ? 1_555 ? 2 AC1 4 CYS A 8 ? CYS A 8 . ? 1_555 ? 3 AC1 4 CYS A 38 ? CYS A 38 . ? 1_555 ? 4 AC1 4 CYS A 41 ? CYS A 41 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 18 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -155.20 _pdbx_validate_torsion.psi 66.45 # _pdbx_entry_details.entry_id 1BRF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'IRON ATOM OF A FES4 UNIT' _pdbx_entry_details.sequence_details 'PROTEIN IDENTICAL TO THAT IN PDB FILE 1CAA' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 FE FE FE N N 61 GLU N N N N 62 GLU CA C N S 63 GLU C C N N 64 GLU O O N N 65 GLU CB C N N 66 GLU CG C N N 67 GLU CD C N N 68 GLU OE1 O N N 69 GLU OE2 O N N 70 GLU OXT O N N 71 GLU H H N N 72 GLU H2 H N N 73 GLU HA H N N 74 GLU HB2 H N N 75 GLU HB3 H N N 76 GLU HG2 H N N 77 GLU HG3 H N N 78 GLU HE2 H N N 79 GLU HXT H N N 80 GLY N N N N 81 GLY CA C N N 82 GLY C C N N 83 GLY O O N N 84 GLY OXT O N N 85 GLY H H N N 86 GLY H2 H N N 87 GLY HA2 H N N 88 GLY HA3 H N N 89 GLY HXT H N N 90 HOH O O N N 91 HOH H1 H N N 92 HOH H2 H N N 93 ILE N N N N 94 ILE CA C N S 95 ILE C C N N 96 ILE O O N N 97 ILE CB C N S 98 ILE CG1 C N N 99 ILE CG2 C N N 100 ILE CD1 C N N 101 ILE OXT O N N 102 ILE H H N N 103 ILE H2 H N N 104 ILE HA H N N 105 ILE HB H N N 106 ILE HG12 H N N 107 ILE HG13 H N N 108 ILE HG21 H N N 109 ILE HG22 H N N 110 ILE HG23 H N N 111 ILE HD11 H N N 112 ILE HD12 H N N 113 ILE HD13 H N N 114 ILE HXT H N N 115 LEU N N N N 116 LEU CA C N S 117 LEU C C N N 118 LEU O O N N 119 LEU CB C N N 120 LEU CG C N N 121 LEU CD1 C N N 122 LEU CD2 C N N 123 LEU OXT O N N 124 LEU H H N N 125 LEU H2 H N N 126 LEU HA H N N 127 LEU HB2 H N N 128 LEU HB3 H N N 129 LEU HG H N N 130 LEU HD11 H N N 131 LEU HD12 H N N 132 LEU HD13 H N N 133 LEU HD21 H N N 134 LEU HD22 H N N 135 LEU HD23 H N N 136 LEU HXT H N N 137 LYS N N N N 138 LYS CA C N S 139 LYS C C N N 140 LYS O O N N 141 LYS CB C N N 142 LYS CG C N N 143 LYS CD C N N 144 LYS CE C N N 145 LYS NZ N N N 146 LYS OXT O N N 147 LYS H H N N 148 LYS H2 H N N 149 LYS HA H N N 150 LYS HB2 H N N 151 LYS HB3 H N N 152 LYS HG2 H N N 153 LYS HG3 H N N 154 LYS HD2 H N N 155 LYS HD3 H N N 156 LYS HE2 H N N 157 LYS HE3 H N N 158 LYS HZ1 H N N 159 LYS HZ2 H N N 160 LYS HZ3 H N N 161 LYS HXT H N N 162 PHE N N N N 163 PHE CA C N S 164 PHE C C N N 165 PHE O O N N 166 PHE CB C N N 167 PHE CG C Y N 168 PHE CD1 C Y N 169 PHE CD2 C Y N 170 PHE CE1 C Y N 171 PHE CE2 C Y N 172 PHE CZ C Y N 173 PHE OXT O N N 174 PHE H H N N 175 PHE H2 H N N 176 PHE HA H N N 177 PHE HB2 H N N 178 PHE HB3 H N N 179 PHE HD1 H N N 180 PHE HD2 H N N 181 PHE HE1 H N N 182 PHE HE2 H N N 183 PHE HZ H N N 184 PHE HXT H N N 185 PRO N N N N 186 PRO CA C N S 187 PRO C C N N 188 PRO O O N N 189 PRO CB C N N 190 PRO CG C N N 191 PRO CD C N N 192 PRO OXT O N N 193 PRO H H N N 194 PRO HA H N N 195 PRO HB2 H N N 196 PRO HB3 H N N 197 PRO HG2 H N N 198 PRO HG3 H N N 199 PRO HD2 H N N 200 PRO HD3 H N N 201 PRO HXT H N N 202 SER N N N N 203 SER CA C N S 204 SER C C N N 205 SER O O N N 206 SER CB C N N 207 SER OG O N N 208 SER OXT O N N 209 SER H H N N 210 SER H2 H N N 211 SER HA H N N 212 SER HB2 H N N 213 SER HB3 H N N 214 SER HG H N N 215 SER HXT H N N 216 THR N N N N 217 THR CA C N S 218 THR C C N N 219 THR O O N N 220 THR CB C N R 221 THR OG1 O N N 222 THR CG2 C N N 223 THR OXT O N N 224 THR H H N N 225 THR H2 H N N 226 THR HA H N N 227 THR HB H N N 228 THR HG1 H N N 229 THR HG21 H N N 230 THR HG22 H N N 231 THR HG23 H N N 232 THR HXT H N N 233 TRP N N N N 234 TRP CA C N S 235 TRP C C N N 236 TRP O O N N 237 TRP CB C N N 238 TRP CG C Y N 239 TRP CD1 C Y N 240 TRP CD2 C Y N 241 TRP NE1 N Y N 242 TRP CE2 C Y N 243 TRP CE3 C Y N 244 TRP CZ2 C Y N 245 TRP CZ3 C Y N 246 TRP CH2 C Y N 247 TRP OXT O N N 248 TRP H H N N 249 TRP H2 H N N 250 TRP HA H N N 251 TRP HB2 H N N 252 TRP HB3 H N N 253 TRP HD1 H N N 254 TRP HE1 H N N 255 TRP HE3 H N N 256 TRP HZ2 H N N 257 TRP HZ3 H N N 258 TRP HH2 H N N 259 TRP HXT H N N 260 TYR N N N N 261 TYR CA C N S 262 TYR C C N N 263 TYR O O N N 264 TYR CB C N N 265 TYR CG C Y N 266 TYR CD1 C Y N 267 TYR CD2 C Y N 268 TYR CE1 C Y N 269 TYR CE2 C Y N 270 TYR CZ C Y N 271 TYR OH O N N 272 TYR OXT O N N 273 TYR H H N N 274 TYR H2 H N N 275 TYR HA H N N 276 TYR HB2 H N N 277 TYR HB3 H N N 278 TYR HD1 H N N 279 TYR HD2 H N N 280 TYR HE1 H N N 281 TYR HE2 H N N 282 TYR HH H N N 283 TYR HXT H N N 284 VAL N N N N 285 VAL CA C N S 286 VAL C C N N 287 VAL O O N N 288 VAL CB C N N 289 VAL CG1 C N N 290 VAL CG2 C N N 291 VAL OXT O N N 292 VAL H H N N 293 VAL H2 H N N 294 VAL HA H N N 295 VAL HB H N N 296 VAL HG11 H N N 297 VAL HG12 H N N 298 VAL HG13 H N N 299 VAL HG21 H N N 300 VAL HG22 H N N 301 VAL HG23 H N N 302 VAL HXT H N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 GLU N CA sing N N 57 GLU N H sing N N 58 GLU N H2 sing N N 59 GLU CA C sing N N 60 GLU CA CB sing N N 61 GLU CA HA sing N N 62 GLU C O doub N N 63 GLU C OXT sing N N 64 GLU CB CG sing N N 65 GLU CB HB2 sing N N 66 GLU CB HB3 sing N N 67 GLU CG CD sing N N 68 GLU CG HG2 sing N N 69 GLU CG HG3 sing N N 70 GLU CD OE1 doub N N 71 GLU CD OE2 sing N N 72 GLU OE2 HE2 sing N N 73 GLU OXT HXT sing N N 74 GLY N CA sing N N 75 GLY N H sing N N 76 GLY N H2 sing N N 77 GLY CA C sing N N 78 GLY CA HA2 sing N N 79 GLY CA HA3 sing N N 80 GLY C O doub N N 81 GLY C OXT sing N N 82 GLY OXT HXT sing N N 83 HOH O H1 sing N N 84 HOH O H2 sing N N 85 ILE N CA sing N N 86 ILE N H sing N N 87 ILE N H2 sing N N 88 ILE CA C sing N N 89 ILE CA CB sing N N 90 ILE CA HA sing N N 91 ILE C O doub N N 92 ILE C OXT sing N N 93 ILE CB CG1 sing N N 94 ILE CB CG2 sing N N 95 ILE CB HB sing N N 96 ILE CG1 CD1 sing N N 97 ILE CG1 HG12 sing N N 98 ILE CG1 HG13 sing N N 99 ILE CG2 HG21 sing N N 100 ILE CG2 HG22 sing N N 101 ILE CG2 HG23 sing N N 102 ILE CD1 HD11 sing N N 103 ILE CD1 HD12 sing N N 104 ILE CD1 HD13 sing N N 105 ILE OXT HXT sing N N 106 LEU N CA sing N N 107 LEU N H sing N N 108 LEU N H2 sing N N 109 LEU CA C sing N N 110 LEU CA CB sing N N 111 LEU CA HA sing N N 112 LEU C O doub N N 113 LEU C OXT sing N N 114 LEU CB CG sing N N 115 LEU CB HB2 sing N N 116 LEU CB HB3 sing N N 117 LEU CG CD1 sing N N 118 LEU CG CD2 sing N N 119 LEU CG HG sing N N 120 LEU CD1 HD11 sing N N 121 LEU CD1 HD12 sing N N 122 LEU CD1 HD13 sing N N 123 LEU CD2 HD21 sing N N 124 LEU CD2 HD22 sing N N 125 LEU CD2 HD23 sing N N 126 LEU OXT HXT sing N N 127 LYS N CA sing N N 128 LYS N H sing N N 129 LYS N H2 sing N N 130 LYS CA C sing N N 131 LYS CA CB sing N N 132 LYS CA HA sing N N 133 LYS C O doub N N 134 LYS C OXT sing N N 135 LYS CB CG sing N N 136 LYS CB HB2 sing N N 137 LYS CB HB3 sing N N 138 LYS CG CD sing N N 139 LYS CG HG2 sing N N 140 LYS CG HG3 sing N N 141 LYS CD CE sing N N 142 LYS CD HD2 sing N N 143 LYS CD HD3 sing N N 144 LYS CE NZ sing N N 145 LYS CE HE2 sing N N 146 LYS CE HE3 sing N N 147 LYS NZ HZ1 sing N N 148 LYS NZ HZ2 sing N N 149 LYS NZ HZ3 sing N N 150 LYS OXT HXT sing N N 151 PHE N CA sing N N 152 PHE N H sing N N 153 PHE N H2 sing N N 154 PHE CA C sing N N 155 PHE CA CB sing N N 156 PHE CA HA sing N N 157 PHE C O doub N N 158 PHE C OXT sing N N 159 PHE CB CG sing N N 160 PHE CB HB2 sing N N 161 PHE CB HB3 sing N N 162 PHE CG CD1 doub Y N 163 PHE CG CD2 sing Y N 164 PHE CD1 CE1 sing Y N 165 PHE CD1 HD1 sing N N 166 PHE CD2 CE2 doub Y N 167 PHE CD2 HD2 sing N N 168 PHE CE1 CZ doub Y N 169 PHE CE1 HE1 sing N N 170 PHE CE2 CZ sing Y N 171 PHE CE2 HE2 sing N N 172 PHE CZ HZ sing N N 173 PHE OXT HXT sing N N 174 PRO N CA sing N N 175 PRO N CD sing N N 176 PRO N H sing N N 177 PRO CA C sing N N 178 PRO CA CB sing N N 179 PRO CA HA sing N N 180 PRO C O doub N N 181 PRO C OXT sing N N 182 PRO CB CG sing N N 183 PRO CB HB2 sing N N 184 PRO CB HB3 sing N N 185 PRO CG CD sing N N 186 PRO CG HG2 sing N N 187 PRO CG HG3 sing N N 188 PRO CD HD2 sing N N 189 PRO CD HD3 sing N N 190 PRO OXT HXT sing N N 191 SER N CA sing N N 192 SER N H sing N N 193 SER N H2 sing N N 194 SER CA C sing N N 195 SER CA CB sing N N 196 SER CA HA sing N N 197 SER C O doub N N 198 SER C OXT sing N N 199 SER CB OG sing N N 200 SER CB HB2 sing N N 201 SER CB HB3 sing N N 202 SER OG HG sing N N 203 SER OXT HXT sing N N 204 THR N CA sing N N 205 THR N H sing N N 206 THR N H2 sing N N 207 THR CA C sing N N 208 THR CA CB sing N N 209 THR CA HA sing N N 210 THR C O doub N N 211 THR C OXT sing N N 212 THR CB OG1 sing N N 213 THR CB CG2 sing N N 214 THR CB HB sing N N 215 THR OG1 HG1 sing N N 216 THR CG2 HG21 sing N N 217 THR CG2 HG22 sing N N 218 THR CG2 HG23 sing N N 219 THR OXT HXT sing N N 220 TRP N CA sing N N 221 TRP N H sing N N 222 TRP N H2 sing N N 223 TRP CA C sing N N 224 TRP CA CB sing N N 225 TRP CA HA sing N N 226 TRP C O doub N N 227 TRP C OXT sing N N 228 TRP CB CG sing N N 229 TRP CB HB2 sing N N 230 TRP CB HB3 sing N N 231 TRP CG CD1 doub Y N 232 TRP CG CD2 sing Y N 233 TRP CD1 NE1 sing Y N 234 TRP CD1 HD1 sing N N 235 TRP CD2 CE2 doub Y N 236 TRP CD2 CE3 sing Y N 237 TRP NE1 CE2 sing Y N 238 TRP NE1 HE1 sing N N 239 TRP CE2 CZ2 sing Y N 240 TRP CE3 CZ3 doub Y N 241 TRP CE3 HE3 sing N N 242 TRP CZ2 CH2 doub Y N 243 TRP CZ2 HZ2 sing N N 244 TRP CZ3 CH2 sing Y N 245 TRP CZ3 HZ3 sing N N 246 TRP CH2 HH2 sing N N 247 TRP OXT HXT sing N N 248 TYR N CA sing N N 249 TYR N H sing N N 250 TYR N H2 sing N N 251 TYR CA C sing N N 252 TYR CA CB sing N N 253 TYR CA HA sing N N 254 TYR C O doub N N 255 TYR C OXT sing N N 256 TYR CB CG sing N N 257 TYR CB HB2 sing N N 258 TYR CB HB3 sing N N 259 TYR CG CD1 doub Y N 260 TYR CG CD2 sing Y N 261 TYR CD1 CE1 sing Y N 262 TYR CD1 HD1 sing N N 263 TYR CD2 CE2 doub Y N 264 TYR CD2 HD2 sing N N 265 TYR CE1 CZ doub Y N 266 TYR CE1 HE1 sing N N 267 TYR CE2 CZ sing Y N 268 TYR CE2 HE2 sing N N 269 TYR CZ OH sing N N 270 TYR OH HH sing N N 271 TYR OXT HXT sing N N 272 VAL N CA sing N N 273 VAL N H sing N N 274 VAL N H2 sing N N 275 VAL CA C sing N N 276 VAL CA CB sing N N 277 VAL CA HA sing N N 278 VAL C O doub N N 279 VAL C OXT sing N N 280 VAL CB CG1 sing N N 281 VAL CB CG2 sing N N 282 VAL CB HB sing N N 283 VAL CG1 HG11 sing N N 284 VAL CG1 HG12 sing N N 285 VAL CG1 HG13 sing N N 286 VAL CG2 HG21 sing N N 287 VAL CG2 HG22 sing N N 288 VAL CG2 HG23 sing N N 289 VAL OXT HXT sing N N 290 # _atom_sites.entry_id 1BRF _atom_sites.fract_transf_matrix[1][1] 0.029306 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028675 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022892 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_