HEADER DNA BINDING PROTEIN 30-SEP-98 1BW6 TITLE HUMAN CENTROMERE PROTEIN B (CENP-B) DNA BINDIGN DOMAIN RP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CENTROMERE PROTEIN B); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSETA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHR1 KEYWDS CENTROMERE PROTEIN, DNA-BINDING, HELIX-TURN-HELIX, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, DNA KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR J.IWAHARA,T.KIGAWA,K.KITAGAWA,H.MASUMOTO,T.OKAZAKI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 16-FEB-22 1BW6 1 REMARK REVDAT 3 24-FEB-09 1BW6 1 VERSN REVDAT 2 29-DEC-99 1BW6 4 HEADER COMPND REMARK JRNL REVDAT 2 2 4 ATOM SOURCE SEQRES REVDAT 1 07-OCT-98 1BW6 0 JRNL AUTH J.IWAHARA,T.KIGAWA,K.KITAGAWA,H.MASUMOTO,T.OKAZAKI, JRNL AUTH 2 S.YOKOYAMA JRNL TITL A HELIX-TURN-HELIX STRUCTURE UNIT IN HUMAN CENTROMERE JRNL TITL 2 PROTEIN B (CENP-B). JRNL REF EMBO J. V. 17 827 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9451007 JRNL DOI 10.1093/EMBOJ/17.3.827 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1BW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000008234. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 400 MM NA2SO4 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX-500; AMX-600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: REMARK 210 ENERGY-MINIMIZED STRUCTURE. THE STRUCTRURE WAS DETERMINED USING REMARK 210 TRIPLE- REMARK 210 RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED CENP-B DBD RP1. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -103.33 -78.64 REMARK 500 ARG A 5 -56.85 -166.44 REMARK 500 ARG A 6 -52.84 -140.32 REMARK 500 ASN A 36 -100.13 -163.17 REMARK 500 PRO A 38 174.18 -59.67 REMARK 500 SER A 40 -60.51 -100.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 5 0.30 SIDE CHAIN REMARK 500 ARG A 6 0.29 SIDE CHAIN REMARK 500 ARG A 11 0.15 SIDE CHAIN REMARK 500 ARG A 15 0.30 SIDE CHAIN REMARK 500 ARG A 27 0.29 SIDE CHAIN REMARK 500 ARG A 33 0.21 SIDE CHAIN REMARK 500 ARG A 34 0.32 SIDE CHAIN REMARK 500 ARG A 50 0.30 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MY_001000013.1 RELATED DB: TARGETDB DBREF 1BW6 A 1 56 UNP P07199 CENPB_HUMAN 1 56 SEQRES 1 A 56 MET GLY PRO LYS ARG ARG GLN LEU THR PHE ARG GLU LYS SEQRES 2 A 56 SER ARG ILE ILE GLN GLU VAL GLU GLU ASN PRO ASP LEU SEQRES 3 A 56 ARG LYS GLY GLU ILE ALA ARG ARG PHE ASN ILE PRO PRO SEQRES 4 A 56 SER THR LEU SER THR ILE LEU LYS ASN LYS ARG ALA ILE SEQRES 5 A 56 LEU ALA SER GLU HELIX 1 H1 PHE A 10 ASN A 23 1 14 HELIX 2 H2 LYS A 28 PHE A 35 1 8 HELIX 3 H3 SER A 40 ASN A 48 1 9 HELIX 4 H4 LYS A 49 ALA A 54 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000