HEADER OXIDOREDUCTASE 19-JUL-99 1C0P TITLE D-AMINO ACIC OXIDASE IN COMPLEX WITH D-ALANINE AND A PARTIALLY TITLE 2 OCCUPIED BIATOMIC SPECIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPORIDIUM TORULOIDES; SOURCE 3 ORGANISM_TAXID: 5286; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7.7 KEYWDS ALPHA-BETA-ALPHA MOTIF, FLAVIN CONTAINING PROTEIN, OXIDASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.UMHAU,L.POLLEGIONI,G.MOLLA,K.DIEDERICHS,W.WELTE,S.M.PILONE,S.GHISLA REVDAT 7 07-FEB-24 1C0P 1 REMARK SEQADV REVDAT 6 24-JUL-19 1C0P 1 REMARK LINK REVDAT 5 04-OCT-17 1C0P 1 REMARK REVDAT 4 13-JUL-11 1C0P 1 VERSN REVDAT 3 24-FEB-09 1C0P 1 VERSN REVDAT 2 01-APR-03 1C0P 1 JRNL REVDAT 1 22-NOV-00 1C0P 0 JRNL AUTH S.UMHAU,L.POLLEGIONI,G.MOLLA,K.DIEDERICHS,W.WELTE, JRNL AUTH 2 M.S.PILONE,S.GHISLA JRNL TITL THE X-RAY STRUCTURE OF D-AMINO ACID OXIDASE AT VERY HIGH JRNL TITL 2 RESOLUTION IDENTIFIES THE CHEMICAL MECHANISM OF JRNL TITL 3 FLAVIN-DEPENDENT SUBSTRATE DEHYDROGENATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 12463 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 11070076 JRNL DOI 10.1073/PNAS.97.23.12463 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 5.3 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM AND AS IN RELATED D REMARK 3 -AMINO ACID OXIDASE FROM REMARK 3 YEAST RHODOTORULA GRACILIS REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.125 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.116 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 7895 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 147430 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2787 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 612 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : 1.570 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9114 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155642 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES 200 MM AMMONIUM SULFATE REMARK 280 16% POLYETHYLENE GLYCOL (PEG) 10000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.44250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.18200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 60.44250 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 68.18200 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.44250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 68.18200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 60.44250 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 68.18200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.44250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 68.18200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.44250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 68.18200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 60.44250 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.18200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.44250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.44250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.18200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 181.32750 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 181.32750 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.18200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A3448 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA DAL A 1364 O2 PER A 1365 2.09 REMARK 500 O DAL A 1364 O2 PER A 1365 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A1361 C GLY A1361 OXT 2.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 999 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A1025 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 THR A1062 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A1094 CG - CD - NE ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG A1094 CD - NE - CZ ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A1094 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A1094 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A1116 NE - CZ - NH1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A1116 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 GLU A1122 OE1 - CD - OE2 ANGL. DEV. = -8.7 DEGREES REMARK 500 ARG A1160 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 GLU A1166 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A1210 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A1227 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 HIS A1258 CG - ND1 - CE1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A1261 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A1289 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A1298 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A1298 NE - CZ - NH2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG A1318 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A1318 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ALA A1319 C - N - CA ANGL. DEV. = 37.2 DEGREES REMARK 500 ALA A1320 C - N - CA ANGL. DEV. = 32.4 DEGREES REMARK 500 LYS A1321 CA - C - O ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A1134 -169.74 -120.41 REMARK 500 PHE A1169 49.23 -81.75 REMARK 500 ALA A1178 54.20 -119.14 REMARK 500 SER A1220 88.28 -151.57 REMARK 500 ASP A1263 99.86 -160.17 REMARK 500 ARG A1318 -31.06 -171.89 REMARK 500 ALA A1319 -120.11 -18.84 REMARK 500 ALA A1320 -172.79 1.98 REMARK 500 LYS A1321 -77.32 -49.82 REMARK 500 GLU A1322 111.24 103.00 REMARK 500 ALA A1330 78.33 -155.40 REMARK 500 SER A1334 -126.88 59.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAL A 1364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PER A 1365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1366 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C0L RELATED DB: PDB REMARK 900 D-AMINO ACID OXIDASE IN COMPLEX WITH TRIFLUOROALANINE REMARK 900 RELATED ID: 1C0K RELATED DB: PDB REMARK 900 D-AMINO ACID OXIDASE IN COMPLEX WITH L-LACTATE REMARK 900 RELATED ID: 1C0I RELATED DB: PDB REMARK 900 D-AMINO ACID OXIDASE IN COMPLEX WITH TWO ANTHRANYLATE MOLECULES DBREF 1C0P A 1001 1361 UNP P80324 OXDA_RHOTO 1 361 SEQADV 1C0P LEU A 999 UNP P80324 CLONING ARTIFACT SEQADV 1C0P MET A 1000 UNP P80324 CLONING ARTIFACT SEQRES 1 A 363 LEU MET MET HIS SER GLN LYS ARG VAL VAL VAL LEU GLY SEQRES 2 A 363 SER GLY VAL ILE GLY LEU SER SER ALA LEU ILE LEU ALA SEQRES 3 A 363 ARG LYS GLY TYR SER VAL HIS ILE LEU ALA ARG ASP LEU SEQRES 4 A 363 PRO GLU ASP VAL SER SER GLN THR PHE ALA SER PRO TRP SEQRES 5 A 363 ALA GLY ALA ASN TRP THR PRO PHE MET THR LEU THR ASP SEQRES 6 A 363 GLY PRO ARG GLN ALA LYS TRP GLU GLU SER THR PHE LYS SEQRES 7 A 363 LYS TRP VAL GLU LEU VAL PRO THR GLY HIS ALA MET TRP SEQRES 8 A 363 LEU LYS GLY THR ARG ARG PHE ALA GLN ASN GLU ASP GLY SEQRES 9 A 363 LEU LEU GLY HIS TRP TYR LYS ASP ILE THR PRO ASN TYR SEQRES 10 A 363 ARG PRO LEU PRO SER SER GLU CYS PRO PRO GLY ALA ILE SEQRES 11 A 363 GLY VAL THR TYR ASP THR LEU SER VAL HIS ALA PRO LYS SEQRES 12 A 363 TYR CYS GLN TYR LEU ALA ARG GLU LEU GLN LYS LEU GLY SEQRES 13 A 363 ALA THR PHE GLU ARG ARG THR VAL THR SER LEU GLU GLN SEQRES 14 A 363 ALA PHE ASP GLY ALA ASP LEU VAL VAL ASN ALA THR GLY SEQRES 15 A 363 LEU GLY ALA LYS SER ILE ALA GLY ILE ASP ASP GLN ALA SEQRES 16 A 363 ALA GLU PRO ILE ARG GLY GLN THR VAL LEU VAL LYS SER SEQRES 17 A 363 PRO CYS LYS ARG CYS THR MET ASP SER SER ASP PRO ALA SEQRES 18 A 363 SER PRO ALA TYR ILE ILE PRO ARG PRO GLY GLY GLU VAL SEQRES 19 A 363 ILE CYS GLY GLY THR TYR GLY VAL GLY ASP TRP ASP LEU SEQRES 20 A 363 SER VAL ASN PRO GLU THR VAL GLN ARG ILE LEU LYS HIS SEQRES 21 A 363 CYS LEU ARG LEU ASP PRO THR ILE SER SER ASP GLY THR SEQRES 22 A 363 ILE GLU GLY ILE GLU VAL LEU ARG HIS ASN VAL GLY LEU SEQRES 23 A 363 ARG PRO ALA ARG ARG GLY GLY PRO ARG VAL GLU ALA GLU SEQRES 24 A 363 ARG ILE VAL LEU PRO LEU ASP ARG THR LYS SER PRO LEU SEQRES 25 A 363 SER LEU GLY ARG GLY SER ALA ARG ALA ALA LYS GLU LYS SEQRES 26 A 363 GLU VAL THR LEU VAL HIS ALA TYR GLY PHE SER SER ALA SEQRES 27 A 363 GLY TYR GLN GLN SER TRP GLY ALA ALA GLU ASP VAL ALA SEQRES 28 A 363 GLN LEU VAL ASP GLU ALA PHE GLN ARG TYR HIS GLY HET FAD A1363 53 HET DAL A1364 6 HET PER A1365 2 HET GOL A1366 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM DAL D-ALANINE HETNAM PER PEROXIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 DAL C3 H7 N O2 FORMUL 4 PER O2 2- FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *612(H2 O) HELIX 1 1 GLY A 1013 LYS A 1026 1 14 HELIX 2 2 ALA A 1047 ALA A 1051 5 5 HELIX 3 3 GLY A 1064 VAL A 1082 1 19 HELIX 4 4 ASN A 1099 TRP A 1107 5 9 HELIX 5 5 PRO A 1119 CYS A 1123 5 5 HELIX 6 6 HIS A 1138 LEU A 1153 1 16 HELIX 7 7 LEU A 1165 ALA A 1168 5 4 HELIX 8 8 THR A 1179 SER A 1185 5 7 HELIX 9 9 ASN A 1248 ASP A 1263 1 16 HELIX 10 10 PRO A 1264 SER A 1267 5 4 HELIX 11 11 THR A 1271 ILE A 1275 5 5 HELIX 12 12 PHE A 1333 SER A 1335 5 3 HELIX 13 13 ALA A 1336 HIS A 1360 1 25 SHEET 1 A 6 THR A1156 ARG A1159 0 SHEET 2 A 6 SER A1029 ALA A1034 1 O VAL A1030 N THR A1156 SHEET 3 A 6 ARG A1006 LEU A1010 1 N VAL A1007 O SER A1029 SHEET 4 A 6 LEU A1174 ASN A1177 1 O LEU A1174 N VAL A1008 SHEET 5 A 6 LYS A1323 TYR A1331 1 O THR A1326 N VAL A1175 SHEET 6 A 6 ARG A1293 LEU A1301 -1 N ARG A1293 O TYR A1331 SHEET 1 B 8 GLU A1276 ARG A1288 0 SHEET 2 B 8 ALA A1194 LYS A1205 -1 O GLU A1195 N ALA A1287 SHEET 3 B 8 GLU A1231 GLY A1235 -1 O VAL A1232 N VAL A1204 SHEET 4 B 8 ALA A1222 ARG A1227 -1 O TYR A1223 N GLY A1235 SHEET 5 B 8 THR A1212 ASP A1214 -1 O THR A1212 N ILE A1224 SHEET 6 B 8 MET A1088 ALA A1097 1 O ARG A1094 N MET A1213 SHEET 7 B 8 ILE A1128 SER A1136 -1 O ILE A1128 N ALA A1097 SHEET 8 B 8 ARG A1116 PRO A1117 -1 O ARG A1116 N THR A1131 SHEET 1 B1 3 GLU A1276 ARG A1288 0 SHEET 2 B1 3 ALA A1194 LYS A1205 -1 O GLU A1195 N ALA A1287 SHEET 3 B1 3 GLY A1239 VAL A1240 -1 O GLY A1239 N ARG A1198 LINK C4X FAD A1363 O2 PER A1365 1555 1555 1.78 LINK N5 FAD A1363 O2 PER A1365 1555 1555 1.61 LINK C5X FAD A1363 O1 PER A1365 1555 1555 1.80 LINK C5X FAD A1363 O2 PER A1365 1555 1555 2.03 LINK C9A FAD A1363 O1 PER A1365 1555 1555 1.78 LINK O DAL A1364 O1 PER A1365 1555 1555 1.69 LINK C DAL A1364 O2 PER A1365 1555 1555 2.01 CISPEP 1 GLY A 1052 ALA A 1053 0 -16.42 CISPEP 2 GLY A 1235 GLY A 1236 0 1.30 CISPEP 3 LEU A 1301 PRO A 1302 0 -3.95 SITE 1 AC1 39 GLY A1011 SER A1012 GLY A1013 VAL A1014 SITE 2 AC1 39 ILE A1015 ALA A1034 ARG A1035 ASP A1036 SITE 3 AC1 39 PHE A1046 ALA A1047 SER A1048 TRP A1050 SITE 4 AC1 39 ALA A1051 GLY A1052 ALA A1053 ASN A1054 SITE 5 AC1 39 ARG A1160 THR A1161 VAL A1162 ALA A1178 SITE 6 AC1 39 THR A1179 GLY A1182 THR A1201 TYR A1223 SITE 7 AC1 39 ARG A1285 PRO A1286 SER A1334 SER A1335 SITE 8 AC1 39 ALA A1336 GLY A1337 TYR A1338 GLN A1339 SITE 9 AC1 39 DAL A1364 PER A1365 HOH A3001 HOH A3003 SITE 10 AC1 39 HOH A3009 HOH A3010 HOH A3040 SITE 1 AC2 8 PHE A1058 TYR A1223 TYR A1238 ARG A1285 SITE 2 AC2 8 SER A1335 FAD A1363 PER A1365 HOH A3073 SITE 1 AC3 4 ARG A1285 SER A1335 FAD A1363 DAL A1364 SITE 1 AC4 9 ARG A1035 THR A1045 LEU A1181 GLY A1182 SITE 2 AC4 9 HOH A3008 HOH A3040 HOH A3046 HOH A3049 SITE 3 AC4 9 HOH A3071 CRYST1 120.885 120.885 136.364 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008272 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007333 0.00000