HEADER DNA BINDING PROTEIN 22-JUL-99 1C20 TITLE SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN FROM THE DEAD RINGER TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEAD RINGER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1; SOURCE 8 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN DROSOPHILA SOURCE 9 MELANOGASTER KEYWDS DNA-BINDING DOMAIN, ARID, AT-RICH INTERACTION DOMAIN, DNA-BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR J.IWAHARA,R.T.CLUBB REVDAT 4 22-MAY-24 1C20 1 REMARK REVDAT 3 16-FEB-22 1C20 1 KEYWDS REMARK REVDAT 2 24-FEB-09 1C20 1 VERSN REVDAT 1 10-NOV-99 1C20 0 JRNL AUTH J.IWAHARA,R.T.CLUBB JRNL TITL SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN FROM DEAD JRNL TITL 2 RINGER, A SEQUENCE-SPECIFIC AT-RICH INTERACTION DOMAIN JRNL TITL 3 (ARID). JRNL REF EMBO J. V. 18 6084 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10545119 JRNL DOI 10.1093/EMBOJ/18.21.6084 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1999, X-PLOR 3.8 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), BRUNGER, A. (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C20 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000009381. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0.10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM DEAD RINGER U-15N; 20MM REMARK 210 TRIS-HCL (PH 6.7); 100MM NACL; REMARK 210 1.5MM ZNCL2; 2MM DTT; 0.01% NAN3; REMARK 210 1.5MM DEAD RINGER U-15N,13C; REMARK 210 20MM TRIS-HCL (PH 6.7); 100MM REMARK 210 NACL; 1.5MM ZNCL2; 2MM DTT; 0.01% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE PRIMARY REFERENCE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.0.3, X-PLOR 3.8 REMARK 210 METHOD USED : SEE PRIMARY REFERENCE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, WITH REMARK 210 FAVORABLE NON-BOND ENERGY, AND REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 21 REMARK 210 REMARK 210 REMARK: SEE PRIMARY REFERENCE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 92 H ALA A 94 1.45 REMARK 500 O SER A 93 H THR A 97 1.54 REMARK 500 O MET A 49 H SER A 52 1.54 REMARK 500 O GLN A 123 H ASP A 127 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 37 -9.31 -55.51 REMARK 500 1 PRO A 42 -154.81 -54.38 REMARK 500 1 ILE A 43 -149.87 -70.76 REMARK 500 1 ALA A 50 -97.08 47.63 REMARK 500 1 LEU A 54 97.66 -60.76 REMARK 500 1 HIS A 86 117.37 -35.97 REMARK 500 1 PRO A 88 -72.70 -56.96 REMARK 500 1 SER A 89 20.18 179.55 REMARK 500 1 ILE A 91 60.38 39.96 REMARK 500 1 THR A 92 -148.99 -60.41 REMARK 500 1 SER A 93 52.29 -68.04 REMARK 500 2 GLN A 37 -8.52 -48.52 REMARK 500 2 PRO A 42 -164.74 -52.70 REMARK 500 2 ILE A 43 -145.09 -61.01 REMARK 500 2 ASN A 44 -80.04 -89.97 REMARK 500 2 ALA A 50 -89.97 42.92 REMARK 500 2 LYS A 76 54.88 39.34 REMARK 500 2 LEU A 85 56.65 -99.30 REMARK 500 2 HIS A 86 149.99 -40.00 REMARK 500 2 SER A 89 19.14 173.93 REMARK 500 2 SER A 90 8.26 -153.69 REMARK 500 2 SER A 93 30.01 -145.98 REMARK 500 3 PRO A 42 -152.28 -56.52 REMARK 500 3 ILE A 43 -157.57 -66.99 REMARK 500 3 ALA A 50 -89.96 41.04 REMARK 500 3 LEU A 54 97.08 -61.23 REMARK 500 3 LEU A 85 56.68 -140.79 REMARK 500 3 PRO A 88 -70.49 -61.66 REMARK 500 3 SER A 89 27.44 170.88 REMARK 500 3 SER A 90 -29.11 -163.87 REMARK 500 3 SER A 93 61.16 3.09 REMARK 500 4 PRO A 42 -154.21 -56.86 REMARK 500 4 ILE A 43 -156.13 -70.05 REMARK 500 4 ALA A 50 80.78 36.22 REMARK 500 4 LYS A 51 -20.50 57.68 REMARK 500 4 LEU A 54 95.86 -64.02 REMARK 500 4 LEU A 85 58.63 -149.87 REMARK 500 4 PRO A 88 19.14 -55.67 REMARK 500 4 SER A 90 17.93 -159.36 REMARK 500 4 THR A 92 40.92 -90.02 REMARK 500 4 SER A 93 18.86 -162.43 REMARK 500 5 PRO A 42 -155.68 -54.06 REMARK 500 5 ILE A 43 -152.39 -70.97 REMARK 500 5 ALA A 50 -88.92 39.97 REMARK 500 5 LEU A 54 99.22 -59.92 REMARK 500 5 LEU A 85 58.35 -98.77 REMARK 500 5 HIS A 86 157.37 -36.45 REMARK 500 5 PRO A 88 26.44 -63.06 REMARK 500 5 SER A 90 -32.44 -152.24 REMARK 500 5 SER A 93 44.44 -146.72 REMARK 500 REMARK 500 THIS ENTRY HAS 222 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 14 0.14 SIDE CHAIN REMARK 500 1 ARG A 25 0.09 SIDE CHAIN REMARK 500 1 ARG A 39 0.27 SIDE CHAIN REMARK 500 1 ARG A 45 0.31 SIDE CHAIN REMARK 500 1 ARG A 66 0.21 SIDE CHAIN REMARK 500 1 ARG A 99 0.30 SIDE CHAIN REMARK 500 1 ARG A 130 0.25 SIDE CHAIN REMARK 500 2 ARG A 25 0.28 SIDE CHAIN REMARK 500 2 ARG A 39 0.20 SIDE CHAIN REMARK 500 2 ARG A 45 0.32 SIDE CHAIN REMARK 500 2 ARG A 66 0.31 SIDE CHAIN REMARK 500 2 ARG A 99 0.32 SIDE CHAIN REMARK 500 2 ARG A 130 0.30 SIDE CHAIN REMARK 500 3 ARG A 14 0.20 SIDE CHAIN REMARK 500 3 ARG A 25 0.22 SIDE CHAIN REMARK 500 3 ARG A 45 0.22 SIDE CHAIN REMARK 500 3 ARG A 66 0.14 SIDE CHAIN REMARK 500 3 ARG A 99 0.30 SIDE CHAIN REMARK 500 3 ARG A 130 0.28 SIDE CHAIN REMARK 500 4 ARG A 14 0.27 SIDE CHAIN REMARK 500 4 ARG A 25 0.24 SIDE CHAIN REMARK 500 4 ARG A 39 0.30 SIDE CHAIN REMARK 500 4 ARG A 45 0.16 SIDE CHAIN REMARK 500 4 ARG A 66 0.30 SIDE CHAIN REMARK 500 4 ARG A 130 0.24 SIDE CHAIN REMARK 500 5 ARG A 14 0.29 SIDE CHAIN REMARK 500 5 ARG A 25 0.30 SIDE CHAIN REMARK 500 5 ARG A 39 0.18 SIDE CHAIN REMARK 500 5 ARG A 45 0.29 SIDE CHAIN REMARK 500 5 ARG A 66 0.29 SIDE CHAIN REMARK 500 5 ARG A 99 0.29 SIDE CHAIN REMARK 500 5 ARG A 130 0.32 SIDE CHAIN REMARK 500 6 ARG A 14 0.23 SIDE CHAIN REMARK 500 6 ARG A 25 0.12 SIDE CHAIN REMARK 500 6 ARG A 39 0.32 SIDE CHAIN REMARK 500 6 ARG A 45 0.19 SIDE CHAIN REMARK 500 6 ARG A 66 0.15 SIDE CHAIN REMARK 500 6 ARG A 99 0.14 SIDE CHAIN REMARK 500 6 ARG A 130 0.23 SIDE CHAIN REMARK 500 7 ARG A 14 0.17 SIDE CHAIN REMARK 500 7 ARG A 25 0.27 SIDE CHAIN REMARK 500 7 ARG A 39 0.30 SIDE CHAIN REMARK 500 7 ARG A 45 0.29 SIDE CHAIN REMARK 500 7 ARG A 66 0.29 SIDE CHAIN REMARK 500 7 ARG A 99 0.31 SIDE CHAIN REMARK 500 7 ARG A 130 0.26 SIDE CHAIN REMARK 500 8 ARG A 14 0.32 SIDE CHAIN REMARK 500 8 ARG A 25 0.26 SIDE CHAIN REMARK 500 8 ARG A 39 0.32 SIDE CHAIN REMARK 500 8 ARG A 45 0.23 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 134 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4334 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENTS OF THE DEAD RINGER DNA-BINDING DOMAIN DBREF 1C20 A 3 130 UNP Q24573 DRI_DROME 262 389 SEQRES 1 A 128 GLY TRP SER PHE GLU GLU GLN PHE LYS GLN VAL ARG GLN SEQRES 2 A 128 LEU TYR GLU ILE ASN ASP ASP PRO LYS ARG LYS GLU PHE SEQRES 3 A 128 LEU ASP ASP LEU PHE SER PHE MET GLN LYS ARG GLY THR SEQRES 4 A 128 PRO ILE ASN ARG LEU PRO ILE MET ALA LYS SER VAL LEU SEQRES 5 A 128 ASP LEU TYR GLU LEU TYR ASN LEU VAL ILE ALA ARG GLY SEQRES 6 A 128 GLY LEU VAL ASP VAL ILE ASN LYS LYS LEU TRP GLN GLU SEQRES 7 A 128 ILE ILE LYS GLY LEU HIS LEU PRO SER SER ILE THR SER SEQRES 8 A 128 ALA ALA PHE THR LEU ARG THR GLN TYR MET LYS TYR LEU SEQRES 9 A 128 TYR PRO TYR GLU CYS GLU LYS LYS ASN LEU SER THR PRO SEQRES 10 A 128 ALA GLU LEU GLN ALA ALA ILE ASP GLY ASN ARG HELIX 1 1 SER A 5 ILE A 19 1 15 HELIX 2 2 ASP A 22 GLN A 37 1 16 HELIX 3 3 ASP A 55 ARG A 66 1 12 HELIX 4 4 GLY A 68 LYS A 76 1 9 HELIX 5 5 LEU A 77 LEU A 85 1 9 HELIX 6 6 SER A 93 LEU A 106 1 14 HELIX 7 7 LEU A 106 ASN A 115 1 10 HELIX 8 8 THR A 118 ARG A 130 1 13 SHEET 1 1 2 ILE A 48 MET A 49 0 SHEET 2 1 2 SER A 52 VAL A 53 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1