HEADER OXIDOREDUCTASE 13-AUG-99 1C4A TITLE BINDING OF EXOGENOUSLY ADDED CARBON MONOXIDE AT THE ACTIVE SITE OF THE TITLE 2 FE-ONLY HYDROGENASE (CPI) FROM CLOSTRIDIUM PASTEURIANUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FE-ONLY HYDROGENASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CPI; COMPND 5 EC: 1.18.99.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PASTEURIANUM; SOURCE 3 ORGANISM_TAXID: 1501; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM KEYWDS METALLOPROTEINS, [FES] CLUSTERS, HYDROGEN OXIDATION, PROTON KEYWDS 2 REDUCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.J.LEMON,J.W.PETERS REVDAT 4 09-AUG-23 1C4A 1 REMARK LINK REVDAT 3 31-MAR-09 1C4A 1 LINK ATOM CONECT REVDAT 2 24-FEB-09 1C4A 1 VERSN REVDAT 1 22-DEC-99 1C4A 0 JRNL AUTH B.J.LEMON,J.W.PETERS JRNL TITL BINDING OF EXOGENOUSLY ADDED CARBON MONOXIDE AT THE ACTIVE JRNL TITL 2 SITE OF THE IRON-ONLY HYDROGENASE (CPI) FROM CLOSTRIDIUM JRNL TITL 3 PASTEURIANUM. JRNL REF BIOCHEMISTRY V. 38 12969 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10529166 JRNL DOI 10.1021/BI9913193 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.857 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 23019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 2.540 REMARK 3 BOND ANGLES (DEGREES) : 0.010 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1C4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000001287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24218 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FEH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.85000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH A 618 4456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 94 NE2 HIS A 94 CD2 -0.108 REMARK 500 HIS A 210 NE2 HIS A 210 CD2 -0.074 REMARK 500 HIS A 492 NE2 HIS A 492 CD2 -0.075 REMARK 500 HIS A 511 NE2 HIS A 511 CD2 -0.068 REMARK 500 HIS A 536 NE2 HIS A 536 CD2 -0.068 REMARK 500 HIS A 543 NE2 HIS A 543 CD2 -0.068 REMARK 500 HIS A 565 NE2 HIS A 565 CD2 -0.067 REMARK 500 HIS A 569 NE2 HIS A 569 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 96 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 PHE A 96 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 LEU A 148 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 TYR A 254 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP A 303 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP A 303 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 LEU A 548 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 MET A 551 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 MET A 551 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 72.47 -43.52 REMARK 500 ASP A 29 61.99 -102.22 REMARK 500 LEU A 33 -61.69 -145.35 REMARK 500 LEU A 36 148.73 -170.96 REMARK 500 ASN A 38 18.77 56.51 REMARK 500 ASN A 44 82.88 43.71 REMARK 500 ASP A 63 15.41 -140.52 REMARK 500 SER A 76 -176.19 -54.76 REMARK 500 ASP A 77 -64.03 -92.36 REMARK 500 SER A 88 43.07 -98.33 REMARK 500 GLN A 89 -28.58 -144.02 REMARK 500 ASP A 92 -12.67 169.95 REMARK 500 PHE A 96 83.29 -66.98 REMARK 500 PRO A 100 53.50 -101.50 REMARK 500 ASN A 106 52.73 -145.10 REMARK 500 CYS A 107 -84.38 -71.07 REMARK 500 GLU A 108 -40.41 132.66 REMARK 500 LEU A 149 70.32 1.70 REMARK 500 GLU A 162 17.91 54.88 REMARK 500 VAL A 202 -167.38 -125.72 REMARK 500 SER A 236 -25.75 -142.62 REMARK 500 PHE A 266 -161.18 -106.07 REMARK 500 ASN A 289 -66.22 79.21 REMARK 500 ASN A 290 -51.19 -140.99 REMARK 500 THR A 334 -71.11 -124.82 REMARK 500 SER A 340 86.35 55.04 REMARK 500 TYR A 445 70.01 -116.63 REMARK 500 ASN A 513 115.32 78.60 REMARK 500 TYR A 555 -52.24 -136.79 REMARK 500 LYS A 558 117.61 47.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 585 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 FES A 585 S1 106.0 REMARK 620 3 FES A 585 S2 117.1 108.0 REMARK 620 4 CYS A 46 SG 108.6 115.4 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 585 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 FES A 585 S1 112.6 REMARK 620 3 FES A 585 S2 112.7 107.9 REMARK 620 4 CYS A 62 SG 106.3 107.9 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 584 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 SF4 A 584 S2 120.8 REMARK 620 3 SF4 A 584 S3 107.3 106.5 REMARK 620 4 SF4 A 584 S4 109.8 103.9 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 584 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 98 SG REMARK 620 2 SF4 A 584 S1 108.6 REMARK 620 3 SF4 A 584 S2 113.7 107.9 REMARK 620 4 SF4 A 584 S3 117.3 103.2 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 584 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 SF4 A 584 S1 106.1 REMARK 620 3 SF4 A 584 S2 115.1 108.2 REMARK 620 4 SF4 A 584 S4 114.0 108.0 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 584 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 107 SG REMARK 620 2 SF4 A 584 S1 111.3 REMARK 620 3 SF4 A 584 S3 113.6 105.6 REMARK 620 4 SF4 A 584 S4 112.8 105.3 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 583 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 147 SG REMARK 620 2 SF4 A 583 S1 108.9 REMARK 620 3 SF4 A 583 S2 114.7 104.5 REMARK 620 4 SF4 A 583 S4 114.8 105.4 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 583 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 150 SG REMARK 620 2 SF4 A 583 S1 119.9 REMARK 620 3 SF4 A 583 S3 102.9 102.2 REMARK 620 4 SF4 A 583 S4 118.7 105.7 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 583 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 153 SG REMARK 620 2 SF4 A 583 S1 109.2 REMARK 620 3 SF4 A 583 S2 115.6 108.1 REMARK 620 4 SF4 A 583 S3 113.3 103.7 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 582 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 157 SG REMARK 620 2 SF4 A 582 S1 111.7 REMARK 620 3 SF4 A 582 S3 118.2 107.5 REMARK 620 4 SF4 A 582 S4 107.4 106.5 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 582 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 190 SG REMARK 620 2 SF4 A 582 S1 115.9 REMARK 620 3 SF4 A 582 S2 102.6 105.8 REMARK 620 4 SF4 A 582 S3 120.6 106.5 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 582 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 193 SG REMARK 620 2 SF4 A 582 S2 116.2 REMARK 620 3 SF4 A 582 S3 118.9 105.1 REMARK 620 4 SF4 A 582 S4 106.6 105.0 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 582 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 196 SG REMARK 620 2 SF4 A 582 S1 119.0 REMARK 620 3 SF4 A 582 S2 108.7 107.8 REMARK 620 4 SF4 A 582 S4 110.0 104.9 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 583 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 200 SG REMARK 620 2 SF4 A 583 S2 114.5 REMARK 620 3 SF4 A 583 S3 108.5 107.0 REMARK 620 4 SF4 A 583 S4 116.6 104.0 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 581 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 SG REMARK 620 2 SF4 A 581 S1 113.1 REMARK 620 3 SF4 A 581 S2 113.7 106.2 REMARK 620 4 SF4 A 581 S4 113.0 105.6 104.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 581 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 SF4 A 581 S2 119.0 REMARK 620 3 SF4 A 581 S3 106.0 105.8 REMARK 620 4 SF4 A 581 S4 111.3 105.6 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 581 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 499 SG REMARK 620 2 SF4 A 581 S1 112.6 REMARK 620 3 SF4 A 581 S3 115.6 104.8 REMARK 620 4 SF4 A 581 S4 109.5 105.9 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HC1 A 580 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 503 SG REMARK 620 2 HC1 A 580 FE2 132.0 REMARK 620 3 HC1 A 580 S1 89.3 55.6 REMARK 620 4 HC1 A 580 S2 90.9 54.8 80.0 REMARK 620 5 HC1 A 580 O1 68.8 63.2 44.4 44.6 REMARK 620 6 HC1 A 580 C3 89.1 121.8 173.5 93.7 129.4 REMARK 620 7 HC1 A 580 C4 92.8 118.2 93.1 172.2 131.1 93.3 REMARK 620 8 HC1 A 580 C5 176.1 51.9 94.1 91.6 115.0 87.7 85.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 581 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 503 SG REMARK 620 2 SF4 A 581 S1 115.6 REMARK 620 3 SF4 A 581 S2 105.4 107.5 REMARK 620 4 SF4 A 581 S3 116.5 105.1 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC1 A 580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 585 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FEH RELATED DB: PDB REMARK 900 RELATED ID: 1C4C RELATED DB: PDB DBREF 1C4A A 1 574 UNP P29166 PHF1_CLOPA 1 574 SEQRES 1 A 574 MET LYS THR ILE ILE ILE ASN GLY VAL GLN PHE ASN THR SEQRES 2 A 574 ASP GLU ASP THR THR ILE LEU LYS PHE ALA ARG ASP ASN SEQRES 3 A 574 ASN ILE ASP ILE SER ALA LEU CYS PHE LEU ASN ASN CYS SEQRES 4 A 574 ASN ASN ASP ILE ASN LYS CYS GLU ILE CYS THR VAL GLU SEQRES 5 A 574 VAL GLU GLY THR GLY LEU VAL THR ALA CYS ASP THR LEU SEQRES 6 A 574 ILE GLU ASP GLY MET ILE ILE ASN THR ASN SER ASP ALA SEQRES 7 A 574 VAL ASN GLU LYS ILE LYS SER ARG ILE SER GLN LEU LEU SEQRES 8 A 574 ASP ILE HIS GLU PHE LYS CYS GLY PRO CYS ASN ARG ARG SEQRES 9 A 574 GLU ASN CYS GLU PHE LEU LYS LEU VAL ILE LYS TYR LYS SEQRES 10 A 574 ALA ARG ALA SER LYS PRO PHE LEU PRO LYS ASP LYS THR SEQRES 11 A 574 GLU TYR VAL ASP GLU ARG SER LYS SER LEU THR VAL ASP SEQRES 12 A 574 ARG THR LYS CYS LEU LEU CYS GLY ARG CYS VAL ASN ALA SEQRES 13 A 574 CYS GLY LYS ASN THR GLU THR TYR ALA MET LYS PHE LEU SEQRES 14 A 574 ASN LYS ASN GLY LYS THR ILE ILE GLY ALA GLU ASP GLU SEQRES 15 A 574 LYS CYS PHE ASP ASP THR ASN CYS LEU LEU CYS GLY GLN SEQRES 16 A 574 CYS ILE ILE ALA CYS PRO VAL ALA ALA LEU SER GLU LYS SEQRES 17 A 574 SER HIS MET ASP ARG VAL LYS ASN ALA LEU ASN ALA PRO SEQRES 18 A 574 GLU LYS HIS VAL ILE VAL ALA MET ALA PRO SER VAL ARG SEQRES 19 A 574 ALA SER ILE GLY GLU LEU PHE ASN MET GLY PHE GLY VAL SEQRES 20 A 574 ASP VAL THR GLY LYS ILE TYR THR ALA LEU ARG GLN LEU SEQRES 21 A 574 GLY PHE ASP LYS ILE PHE ASP ILE ASN PHE GLY ALA ASP SEQRES 22 A 574 MET THR ILE MET GLU GLU ALA THR GLU LEU VAL GLN ARG SEQRES 23 A 574 ILE GLU ASN ASN GLY PRO PHE PRO MET PHE THR SER CYS SEQRES 24 A 574 CYS PRO GLY TRP VAL ARG GLN ALA GLU ASN TYR TYR PRO SEQRES 25 A 574 GLU LEU LEU ASN ASN LEU SER SER ALA LYS SER PRO GLN SEQRES 26 A 574 GLN ILE PHE GLY THR ALA SER LYS THR TYR TYR PRO SER SEQRES 27 A 574 ILE SER GLY LEU ASP PRO LYS ASN VAL PHE THR VAL THR SEQRES 28 A 574 VAL MET PRO CYS THR SER LYS LYS PHE GLU ALA ASP ARG SEQRES 29 A 574 PRO GLN MET GLU LYS ASP GLY LEU ARG ASP ILE ASP ALA SEQRES 30 A 574 VAL ILE THR THR ARG GLU LEU ALA LYS MET ILE LYS ASP SEQRES 31 A 574 ALA LYS ILE PRO PHE ALA LYS LEU GLU ASP SER GLU ALA SEQRES 32 A 574 ASP PRO ALA MET GLY GLU TYR SER GLY ALA GLY ALA ILE SEQRES 33 A 574 PHE GLY ALA THR GLY GLY VAL MET GLU ALA ALA LEU ARG SEQRES 34 A 574 SER ALA LYS ASP PHE ALA GLU ASN ALA GLU LEU GLU ASP SEQRES 35 A 574 ILE GLU TYR LYS GLN VAL ARG GLY LEU ASN GLY ILE LYS SEQRES 36 A 574 GLU ALA GLU VAL GLU ILE ASN ASN ASN LYS TYR ASN VAL SEQRES 37 A 574 ALA VAL ILE ASN GLY ALA SER ASN LEU PHE LYS PHE MET SEQRES 38 A 574 LYS SER GLY MET ILE ASN GLU LYS GLN TYR HIS PHE ILE SEQRES 39 A 574 GLU VAL MET ALA CYS HIS GLY GLY CYS VAL ASN GLY GLY SEQRES 40 A 574 GLY GLN PRO HIS VAL ASN PRO LYS ASP LEU GLU LYS VAL SEQRES 41 A 574 ASP ILE LYS LYS VAL ARG ALA SER VAL LEU TYR ASN GLN SEQRES 42 A 574 ASP GLU HIS LEU SER LYS ARG LYS SER HIS GLU ASN THR SEQRES 43 A 574 ALA LEU VAL LYS MET TYR GLN ASN TYR PHE GLY LYS PRO SEQRES 44 A 574 GLY GLU GLY ARG ALA HIS GLU ILE LEU HIS PHE LYS TYR SEQRES 45 A 574 LYS LYS HET HC1 A 580 16 HET SF4 A 581 8 HET SF4 A 582 8 HET SF4 A 583 8 HET SF4 A 584 8 HET FES A 585 4 HETNAM HC1 2 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER HETNAM SF4 IRON/SULFUR CLUSTER HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 HC1 C5 H8 FE2 O7 S2 FORMUL 3 SF4 4(FE4 S4) FORMUL 7 FES FE2 S2 FORMUL 8 HOH *327(H2 O) HELIX 1 1 THR A 18 ASN A 26 1 9 HELIX 2 2 ASP A 77 LEU A 91 1 15 HELIX 3 3 ARG A 103 CYS A 107 5 5 HELIX 4 4 LEU A 110 LYS A 117 1 8 HELIX 5 5 GLY A 151 THR A 161 1 11 HELIX 6 6 ALA A 179 LYS A 183 5 5 HELIX 7 7 CYS A 184 THR A 188 5 5 HELIX 8 8 GLY A 194 CYS A 200 1 7 HELIX 9 9 HIS A 210 ALA A 220 1 11 HELIX 10 10 PRO A 231 SER A 236 5 6 HELIX 11 11 SER A 236 ASN A 242 5 7 HELIX 12 12 VAL A 249 LEU A 260 1 12 HELIX 13 13 ILE A 268 GLU A 288 1 21 HELIX 14 14 CYS A 300 TYR A 311 1 12 HELIX 15 15 PRO A 312 LEU A 315 5 4 HELIX 16 16 SER A 323 LYS A 333 1 11 HELIX 17 17 THR A 334 ILE A 339 1 6 HELIX 18 18 ASP A 343 LYS A 345 5 3 HELIX 19 19 THR A 356 ASP A 363 1 8 HELIX 20 20 THR A 381 ALA A 391 1 11 HELIX 21 21 PRO A 394 LEU A 398 5 5 HELIX 22 22 ASP A 404 GLY A 408 5 5 HELIX 23 23 SER A 411 ILE A 416 1 6 HELIX 24 24 PHE A 417 ALA A 419 5 3 HELIX 25 25 GLY A 421 ASN A 437 1 17 HELIX 26 26 TYR A 445 ARG A 449 5 5 HELIX 27 27 GLY A 473 SER A 483 1 11 HELIX 28 28 GLY A 484 GLU A 488 5 5 HELIX 29 29 GLY A 502 GLY A 506 5 5 HELIX 30 30 ASN A 513 VAL A 520 1 8 HELIX 31 31 ASP A 521 LEU A 537 1 17 HELIX 32 32 LYS A 541 GLU A 544 5 4 HELIX 33 33 ASN A 545 TYR A 555 1 11 HELIX 34 34 GLU A 561 LEU A 568 1 8 SHEET 1 A 5 VAL A 9 THR A 13 0 SHEET 2 A 5 LYS A 2 ILE A 6 -1 N LYS A 2 O THR A 13 SHEET 3 A 5 MET A 70 ASN A 73 1 O MET A 70 N ILE A 5 SHEET 4 A 5 THR A 50 VAL A 53 -1 N GLU A 52 O ASN A 73 SHEET 5 A 5 GLY A 57 THR A 60 -1 N GLY A 57 O VAL A 53 SHEET 1 B 3 VAL A 133 ASP A 134 0 SHEET 2 B 3 LEU A 140 ASP A 143 -1 O VAL A 142 N ASP A 134 SHEET 3 B 3 LEU A 205 GLU A 207 -1 O SER A 206 N THR A 141 SHEET 1 C 2 LYS A 167 LYS A 171 0 SHEET 2 C 2 LYS A 174 GLY A 178 -1 O LYS A 174 N LYS A 171 SHEET 1 D 4 LYS A 264 ASP A 267 0 SHEET 2 D 4 HIS A 224 MET A 229 1 O VAL A 225 N LYS A 264 SHEET 3 D 4 VAL A 347 MET A 353 1 O PHE A 348 N ILE A 226 SHEET 4 D 4 ALA A 377 THR A 380 1 O ALA A 377 N THR A 351 SHEET 1 E 4 MET A 295 PHE A 296 0 SHEET 2 E 4 PHE A 493 MET A 497 1 N ILE A 494 O MET A 295 SHEET 3 E 4 ASN A 464 ASN A 472 1 O ASN A 467 N PHE A 493 SHEET 4 E 4 ILE A 454 ILE A 461 -1 O LYS A 455 N VAL A 470 SHEET 1 F 2 GLU A 368 LYS A 369 0 SHEET 2 F 2 LEU A 372 ARG A 373 -1 O LEU A 372 N LYS A 369 LINK SG CYS A 34 FE2 FES A 585 1555 1555 2.31 LINK SG CYS A 46 FE2 FES A 585 1555 1555 2.35 LINK SG CYS A 49 FE1 FES A 585 1555 1555 2.28 LINK SG CYS A 62 FE1 FES A 585 1555 1555 2.30 LINK NE2 HIS A 94 FE1 SF4 A 584 1555 1555 1.97 LINK SG CYS A 98 FE4 SF4 A 584 1555 1555 2.39 LINK SG CYS A 101 FE3 SF4 A 584 1555 1555 2.26 LINK SG CYS A 107 FE2 SF4 A 584 1555 1555 2.32 LINK SG CYS A 147 FE3 SF4 A 583 1555 1555 2.39 LINK SG CYS A 150 FE2 SF4 A 583 1555 1555 2.31 LINK SG CYS A 153 FE4 SF4 A 583 1555 1555 2.27 LINK SG CYS A 157 FE2 SF4 A 582 1555 1555 2.28 LINK SG CYS A 190 FE4 SF4 A 582 1555 1555 2.30 LINK SG CYS A 193 FE1 SF4 A 582 1555 1555 2.25 LINK SG CYS A 196 FE3 SF4 A 582 1555 1555 2.29 LINK SG CYS A 200 FE1 SF4 A 583 1555 1555 2.28 LINK SG CYS A 300 FE3 SF4 A 581 1555 1555 2.28 LINK SG CYS A 355 FE1 SF4 A 581 1555 1555 2.24 LINK SG CYS A 499 FE2 SF4 A 581 1555 1555 2.26 LINK SG CYS A 503 FE1 HC1 A 580 1555 1555 2.37 LINK SG CYS A 503 FE4 SF4 A 581 1555 1555 2.37 CISPEP 1 GLY A 99 PRO A 100 0 5.09 CISPEP 2 GLY A 291 PRO A 292 0 25.93 CISPEP 3 PHE A 293 PRO A 294 0 -3.49 SITE 1 AC1 16 ALA A 230 PRO A 231 SER A 232 ALA A 272 SITE 2 AC1 16 CYS A 299 PRO A 324 GLN A 325 MET A 353 SITE 3 AC1 16 PRO A 354 CYS A 355 LYS A 358 PHE A 417 SITE 4 AC1 16 GLY A 418 MET A 497 CYS A 503 SF4 A 581 SITE 1 AC2 8 CYS A 300 PRO A 301 CYS A 355 ALA A 498 SITE 2 AC2 8 CYS A 499 CYS A 503 GLY A 506 HC1 A 580 SITE 1 AC3 8 CYS A 157 MET A 166 CYS A 190 LEU A 191 SITE 2 AC3 8 LEU A 192 CYS A 193 GLY A 194 CYS A 196 SITE 1 AC4 10 CYS A 147 LEU A 148 LEU A 149 CYS A 150 SITE 2 AC4 10 GLY A 151 CYS A 153 ILE A 177 CYS A 200 SITE 3 AC4 10 VAL A 202 LEU A 205 SITE 1 AC5 9 HIS A 94 GLU A 95 LYS A 97 CYS A 98 SITE 2 AC5 9 CYS A 101 ARG A 104 CYS A 107 VAL A 202 SITE 3 AC5 9 ALA A 203 SITE 1 AC6 8 LEU A 33 CYS A 34 PHE A 35 LYS A 45 SITE 2 AC6 8 CYS A 46 GLU A 47 CYS A 49 CYS A 62 CRYST1 133.700 84.000 55.700 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017953 0.00000