HEADER METAL BINDING PROTEIN 27-MAR-00 1C7W TITLE NMR SOLUTION STRUCTURE OF THE CALCIUM-BOUND C-TERMINAL DOMAIN (W81- TITLE 2 S161) OF CALCIUM VECTOR PROTEIN FROM AMPHIOXUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM VECTOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 81-161); COMPND 5 SYNONYM: CAVP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRANCHIOSTOMA LANCEOLATUM; SOURCE 3 ORGANISM_COMMON: AMPHIOXUS; SOURCE 4 ORGANISM_TAXID: 7740; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS EF-HAND FAMILY, CALCIUM BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR I.THERET,S.BALADI,J.A.COX,H.SAKAMOTO,C.T.CRAESCU REVDAT 5 27-DEC-23 1C7W 1 REMARK REVDAT 4 16-FEB-22 1C7W 1 REMARK REVDAT 3 24-FEB-09 1C7W 1 VERSN REVDAT 2 27-SEP-00 1C7W 1 JRNL REVDAT 1 12-APR-00 1C7W 0 JRNL AUTH I.THERET,S.BALADI,J.A.COX,H.SAKAMOTO,C.T.CRAESCU JRNL TITL SEQUENTIAL CALCIUM BINDING TO THE REGULATORY DOMAIN OF JRNL TITL 2 CALCIUM VECTOR PROTEIN REVEALS FUNCTIONAL ASYMMETRY AND A JRNL TITL 3 NOVEL MODE OF STRUCTURAL REARRANGEMENT. JRNL REF BIOCHEMISTRY V. 39 7920 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10891072 JRNL DOI 10.1021/BI000360Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 97.0, FELIX 97.0 REMARK 3 AUTHORS : MSI (SAN DIEGO) (FELIX), MSI (SAN DIEGO) (FELIX) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON 938 NOE REMARK 3 RESTRAINTS, 66 HYDROGEN BOND RESTRAINTS AND 99 DIHEDRAL ANGLE REMARK 3 RESTRAINTS REMARK 4 REMARK 4 1C7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000001445. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM KCL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : UNLABELED; UNIFORMLY 15N LABELED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D (1H-15N)NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY 500 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY (DGII) AND REMARK 210 SIMULATED ANNEALING (DISCOVER) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 2D, HOMONUCLEAR AND 3D REMARK 210 HETERONUCLEAR EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 TRP A 81 REMARK 465 VAL A 82 REMARK 465 ARG A 83 REMARK 465 GLN A 84 REMARK 465 ASP A 85 REMARK 465 ASP A 86 REMARK 465 LYS A 155 REMARK 465 ASN A 156 REMARK 465 ALA A 157 REMARK 465 LEU A 158 REMARK 465 LYS A 159 REMARK 465 GLU A 160 REMARK 465 SER A 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 88 H GLU A 89 0.70 REMARK 500 C GLU A 88 H GLU A 89 1.19 REMARK 500 OD1 ASP A 108 HZ1 LYS A 111 1.58 REMARK 500 OE2 GLU A 87 HZ3 LYS A 95 1.59 REMARK 500 O GLU A 88 N GLU A 89 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 88 O - C - N ANGL. DEV. = -41.8 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET A 114 CA - CB - CG ANGL. DEV. = 10.4 DEGREES REMARK 500 GLN A 115 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 LYS A 116 N - CA - CB ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO A 121 N - CA - CB ANGL. DEV. = -9.5 DEGREES REMARK 500 PRO A 121 N - CD - CG ANGL. DEV. = -9.8 DEGREES REMARK 500 LEU A 122 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 LEU A 122 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 VAL A 127 CA - CB - CG1 ANGL. DEV. = 13.6 DEGREES REMARK 500 MET A 148 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU A 150 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 LEU A 150 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 103.66 -52.96 REMARK 500 GLN A 115 -26.67 -151.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 88 -48.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C7V RELATED DB: PDB REMARK 900 ENSEMBLE OF 20 STRUCTURES DBREF 1C7W A 81 161 UNP P04573 CAVP_BRALA 81 161 SEQRES 1 A 81 TRP VAL ARG GLN ASP ASP GLU GLU GLU ILE LEU ARG ALA SEQRES 2 A 81 PHE LYS VAL PHE ASP ALA ASN GLY ASP GLY VAL ILE ASP SEQRES 3 A 81 PHE ASP GLU PHE LYS PHE ILE MET GLN LYS VAL GLY GLU SEQRES 4 A 81 GLU PRO LEU THR ASP ALA GLU VAL GLU GLU ALA MET LYS SEQRES 5 A 81 GLU ALA ASP GLU ASP GLY ASN GLY VAL ILE ASP ILE PRO SEQRES 6 A 81 GLU PHE MET ASP LEU ILE LYS LYS SER LYS ASN ALA LEU SEQRES 7 A 81 LYS GLU SER HELIX 1 1 GLU A 87 ASP A 98 1 12 HELIX 2 2 PHE A 107 MET A 114 1 8 HELIX 3 3 THR A 123 ASP A 135 1 13 HELIX 4 4 ILE A 144 LYS A 153 1 10 SHEET 1 A 2 VAL A 104 ASP A 106 0 SHEET 2 A 2 VAL A 141 ASP A 143 -1 O ILE A 142 N ILE A 105 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000