data_1CBH
#
_entry.id 1CBH
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1CBH pdb_00001cbh 10.2210/pdb1cbh/pdb
WWPDB D_1000172207 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1990-01-15
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-11-29
5 'Structure model' 1 4 2024-11-06
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Derived calculations'
4 4 'Structure model' Other
5 5 'Structure model' 'Data collection'
6 5 'Structure model' 'Database references'
7 5 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' pdbx_database_status
2 4 'Structure model' pdbx_struct_assembly
3 4 'Structure model' pdbx_struct_oper_list
4 4 'Structure model' struct_conf
5 5 'Structure model' chem_comp_atom
6 5 'Structure model' chem_comp_bond
7 5 'Structure model' database_2
8 5 'Structure model' pdbx_entry_details
9 5 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_pdbx_database_status.process_site'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1CBH
_pdbx_database_status.recvd_initial_deposition_date 1989-05-30
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 2CBH
_pdbx_database_related.details .
_pdbx_database_related.content_type ensemble
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Clore, G.M.' 1
'Gronenborn, A.M.' 2
#
_citation.id primary
_citation.title
;Determination of the three-dimensional solution structure of the C-terminal domain of cellobiohydrolase I from Trichoderma reesei. A study using nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing.
;
_citation.journal_abbrev Biochemistry
_citation.journal_volume 28
_citation.page_first 7241
_citation.page_last 7257
_citation.year 1989
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 2554967
_citation.pdbx_database_id_DOI 10.1021/bi00444a016
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Kraulis, J.' 1 ?
primary 'Clore, G.M.' 2 ?
primary 'Nilges, M.' 3 ?
primary 'Jones, T.A.' 4 ?
primary 'Pettersson, G.' 5 ?
primary 'Knowles, J.' 6 ?
primary 'Gronenborn, A.M.' 7 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method man
_entity.pdbx_description 'C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I'
_entity.formula_weight 3746.126
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec 3.2.1.91
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code TQSHYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL
_entity_poly.pdbx_seq_one_letter_code_can TQSHYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 GLN n
1 3 SER n
1 4 HIS n
1 5 TYR n
1 6 GLY n
1 7 GLN n
1 8 CYS n
1 9 GLY n
1 10 GLY n
1 11 ILE n
1 12 GLY n
1 13 TYR n
1 14 SER n
1 15 GLY n
1 16 PRO n
1 17 THR n
1 18 VAL n
1 19 CYS n
1 20 ALA n
1 21 SER n
1 22 GLY n
1 23 THR n
1 24 THR n
1 25 CYS n
1 26 GLN n
1 27 VAL n
1 28 LEU n
1 29 ASN n
1 30 PRO n
1 31 TYR n
1 32 TYR n
1 33 SER n
1 34 GLN n
1 35 CYS n
1 36 LEU n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus Hypocrea
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Hypocrea jecorina'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 51453
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name ?
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ?
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 GLN 2 2 2 GLN GLN A . n
A 1 3 SER 3 3 3 SER SER A . n
A 1 4 HIS 4 4 4 HIS HIS A . n
A 1 5 TYR 5 5 5 TYR TYR A . n
A 1 6 GLY 6 6 6 GLY GLY A . n
A 1 7 GLN 7 7 7 GLN GLN A . n
A 1 8 CYS 8 8 8 CYS CYS A . n
A 1 9 GLY 9 9 9 GLY GLY A . n
A 1 10 GLY 10 10 10 GLY GLY A . n
A 1 11 ILE 11 11 11 ILE ILE A . n
A 1 12 GLY 12 12 12 GLY GLY A . n
A 1 13 TYR 13 13 13 TYR TYR A . n
A 1 14 SER 14 14 14 SER SER A . n
A 1 15 GLY 15 15 15 GLY GLY A . n
A 1 16 PRO 16 16 16 PRO PRO A . n
A 1 17 THR 17 17 17 THR THR A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 CYS 19 19 19 CYS CYS A . n
A 1 20 ALA 20 20 20 ALA ALA A . n
A 1 21 SER 21 21 21 SER SER A . n
A 1 22 GLY 22 22 22 GLY GLY A . n
A 1 23 THR 23 23 23 THR THR A . n
A 1 24 THR 24 24 24 THR THR A . n
A 1 25 CYS 25 25 25 CYS CYS A . n
A 1 26 GLN 26 26 26 GLN GLN A . n
A 1 27 VAL 27 27 27 VAL VAL A . n
A 1 28 LEU 28 28 28 LEU LEU A . n
A 1 29 ASN 29 29 29 ASN ASN A . n
A 1 30 PRO 30 30 30 PRO PRO A . n
A 1 31 TYR 31 31 31 TYR TYR A . n
A 1 32 TYR 32 32 32 TYR TYR A . n
A 1 33 SER 33 33 33 SER SER A . n
A 1 34 GLN 34 34 34 GLN GLN A . n
A 1 35 CYS 35 35 35 CYS CYS A . n
A 1 36 LEU 36 36 36 LEU LEU A . n
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR 'model building' . ? 1
X-PLOR refinement . ? 2
X-PLOR phasing . ? 3
#
_cell.entry_id 1CBH
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1CBH
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 1CBH
_exptl.method 'SOLUTION NMR'
_exptl.crystals_number ?
#
_database_PDB_matrix.entry_id 1CBH
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1CBH
_struct.title
;DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE C-TERMINAL DOMAIN OF CELLOBIOHYDROLASE I FROM TRICHODERMA REESEI. A STUDY USING NUCLEAR MAGNETIC RESONANCE AND HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1CBH
_struct_keywords.pdbx_keywords 'HYDROLASE (O-GLYCOSYL)'
_struct_keywords.text 'HYDROLASE (O-GLYCOSYL)'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag Y
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code GUX1_TRIRE
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession P62694
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_seq_one_letter_code
;MYRKLAVISAFLATARAQSACTLQSETHPPLTWQKCSSGGTCTQQTGSVVIDANWRWTHATNSSTNCYDGNTWSSTLCPD
NETCAKNCCLDGAAYASTYGVTTSGNSLSIGFVTQSAQKNVGARLYLMASDTTYQEFTLLGNEFSFDVDVSQLPCGLNGA
LYFVSMDADGGVSKYPTNTAGAKYGTGYCDSQCPRDLKFINGQANVEGWEPSSNNANTGIGGHGSCCSEMDIWEANSISE
ALTPHPCTTVGQEICEGDGCGGTYSDNRYGGTCDPDGCDWNPYRLGNTSFYGPGSSFTLDTTKKLTVVTQFETSGAINRY
YVQNGVTFQQPNAELGSYSGNELNDDYCTAEEAEFGGSSFSDKGGLTQFKKATSGGMVLVMSLWDDYYANMLWLDSTYPT
NETSSTPGAVRGSCSTSSGVPAQVESQSPNAKVTFSNIKFGPIGSTGNPSGGNPPGGNRGTTTTRRPATTTGSSPGPTQS
HYGQCGGIGYSGPTVCASGTTCQVLNPYYSQCL
;
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1CBH
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 36
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P62694
_struct_ref_seq.db_align_beg 478
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 513
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 36
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation ?
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 25 SG ? ? A CYS 8 A CYS 25 1_555 ? ? ? ? ? ? ? 2.024 ? ?
disulf2 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 19 A CYS 35 1_555 ? ? ? ? ? ? ? 2.021 ? ?
#
_struct_conn_type.id disulf
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 CYS A 8 ? CYS A 25 ? CYS A 8 ? 1_555 CYS A 25 ? 1_555 SG SG . . . None 'Disulfide bridge'
2 CYS A 19 ? CYS A 35 ? CYS A 19 ? 1_555 CYS A 35 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_sheet.id A
_struct_sheet.type ?
_struct_sheet.number_strands 3
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 TYR A 5 ? GLY A 9 ? TYR A 5 GLY A 9
A 2 THR A 24 ? LEU A 28 ? THR A 24 LEU A 28
A 3 SER A 33 ? LEU A 36 ? SER A 33 LEU A 36
#
_pdbx_entry_details.entry_id 1CBH
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 CG
_pdbx_validate_rmsd_bond.auth_asym_id_1 A
_pdbx_validate_rmsd_bond.auth_comp_id_1 HIS
_pdbx_validate_rmsd_bond.auth_seq_id_1 4
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 ND1
_pdbx_validate_rmsd_bond.auth_asym_id_2 A
_pdbx_validate_rmsd_bond.auth_comp_id_2 HIS
_pdbx_validate_rmsd_bond.auth_seq_id_2 4
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.256
_pdbx_validate_rmsd_bond.bond_target_value 1.369
_pdbx_validate_rmsd_bond.bond_deviation -0.113
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.015
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ILE A 11 ? ? -48.73 150.14
2 1 PRO A 30 ? ? -68.52 25.03
3 1 TYR A 31 ? ? -152.30 11.86
4 1 TYR A 32 ? ? -170.39 130.84
#
_pdbx_nmr_ensemble.entry_id 1CBH
_pdbx_nmr_ensemble.conformers_calculated_total_number ?
_pdbx_nmr_ensemble.conformers_submitted_total_number 1
_pdbx_nmr_ensemble.conformer_selection_criteria ?
#
_pdbx_nmr_refine.entry_id 1CBH
_pdbx_nmr_refine.method ?
_pdbx_nmr_refine.details
;REFINEMENT. THE METHOD USED TO DETERMINE AND REFINE THE
STRUCTURE IS THE HYBRID METRIC MATRIX DISTANCE
GEOMETRY-DYNAMICAL SIMULATED ANNEALING METHOD
(M.NILGES, G.M.CLORE, A.M. GRONENBORN, FEBS LETT. 229,
317-324 (1988)) USING THE PROGRAM XPLOR (A.T. BRUENGER,
YALE UNIVERSITY, CT 06511).
STRUCTURAL STATISTICS
RMS DEVIATION FROM EXPERIMENTAL RESTRAINTS *(1)*
RESTRAINT TYPE NUMBER OF RESTRAINTS RMS (ANGSTROMS)
ALL 578 0.024
INTERRESIDUE
SHORT RANGE 206 0.030
INTERRESIDUE
LONG RANGE 137 0.017
INTRARESIDUE 211 0.021
HBOND *(2)* 24 0.019
POTENTIAL ENERGY TERMS
TYPE ENERGY (KCAL/MOL)
F(NOE) *(3)* 17
F(TOR) *(4)* 0
F(REPEL) *(5)* 34
LENNARD-JONES VAN DER WAALS ENERGY (E(L-J)) CALCULATED
USING THE *CHARMM* EMPIRICAL ENERGY FUNCTION IS
-118 KCAL/MOL.
DEVIATIONS FROM IDEALIZED GEOMETRY *(6)*
TYPE TOTAL NUMBER RMS DEVIATION
BONDS 503 0.010 (ANGSTROMS)
ANGLES 896 2.170 (DEGREES)
IMPROPERS 227 0.911 (DEGREES)
NOTES.
*(1)* THE RMS DEVIATION FROM THE EXPERIMENTAL RESTRAINTS
ARE CALCULATED WITH RESPECT TO THE UPPER AND
LOWER LIMITS OF THE DISTANCE RESTRAINTS. NONE OF
THE STRUCTURES EXHIBITED VIOLATIONS GREATER THAN
0.5 ANGSTROMS.
*(2)* FOR EACH BACKBONE HYDROGEN BOND THERE ARE TWO
RESTRAINTS - R(NH-O) .LT. 2.3 ANGSTROMS AND
R(N-O) .LT. 3.3 ANGSTROMS. THE LOWER LIMITS
ARE GIVEN BY THE SUM OF THE VAN DER WAALS RADII
OF THE RELEVANT ATOMS.
*(3)* THE VALUES OF THE SQUARE-WELL NOE POTENTIAL
F(NOE) ARE CALCULATED WITH A FORCE CONSTANT OF
50 KCAL/MOL/ANGSTROM**2.
*(4)* THE VALUES OF F(PHI) ARE CALCULATED WITH A FORCE
CONSTANT OF 200 KCAL/MOL/RAD**2. F(PHI) IS A
SQUARE-WELL DIHEDRAL POTENTIAL WHICH IS USED TO
RESTRICT THE RANGES OF 33 PHI ,24 PSI AND 25 CHI1
TORSION ANGLES.
*(5)* THE VALUE OF THE VAN DER WAALS REPULSION TERM
F(REPEL) IS CALCULATED WITH A FORCE CONSTANT OF
4 KCAL/MOL/ANGSTROM**4 WITH THE HARD SPHERE
VAN DER WAALS RADII SET TO 0.8 TIMES THE STANDARD
VALUES USED IN THE *CHARMM* EMPIRICAL ENERGY
FUNCTION.
*(6)* THE IMPROPER TERMS SERVE TO MAINTAIN PLANARITY
AND APPROPRIATE CHIRALITY. THEY ALSO MAINTAIN THE
PEPTIDE BONDS OF ALL RESIDUES (WITH THE EXCEPTION
OF PROLINES) IN THE TRANS CONFORMATION. IN THE
DYNAMICAL SIMULATED ANNEALING CALCULATIONS, THE
RESTRAINTS FOR THE DISULFIDE BRIDGES ARE INCLUDED
IN THE BOND AND ANGLE TERMS.
A TOTAL OF 41 STRUCTURES CONSISTENT WITH THE NMR DATA
WERE CALCULATED. THIS ENTRY REPRESENTS THE COORDINATES
OBTAINED BY AVERAGING THE COORDINATES OF THE INDIVIDUAL
STRUCTURES AND SUBJECTING THE RESULTING COORDINATES TO
FURTHER RESTRAINED MINIMIZATION. THE COORDINATES OF THE
41 STRUCTURES ARE GIVEN IN THE PROTEIN DATA BANK ENTRY
*2CBH*.
THE THERMAL PARAMETERS GIVEN IN THIS ENTRY REPRESENT THE
ATOMIC RMS DEVIATION OF THE INDIVIDUAL STRUCTURES ABOUT
THE MEAN COORDINATE POSITIONS.
ALL THE INTERPROTON DISTANCE AND TORSION ANGLE RESTRAINTS
ARE AVAILABLE IN THE RESTRAINT FILE.
;
_pdbx_nmr_refine.software_ordinal 1
#
_pdbx_nmr_software.classification refinement
_pdbx_nmr_software.name XPLOR
_pdbx_nmr_software.version ?
_pdbx_nmr_software.authors BRUNGER
_pdbx_nmr_software.ordinal 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ASN N N N N 14
ASN CA C N S 15
ASN C C N N 16
ASN O O N N 17
ASN CB C N N 18
ASN CG C N N 19
ASN OD1 O N N 20
ASN ND2 N N N 21
ASN OXT O N N 22
ASN H H N N 23
ASN H2 H N N 24
ASN HA H N N 25
ASN HB2 H N N 26
ASN HB3 H N N 27
ASN HD21 H N N 28
ASN HD22 H N N 29
ASN HXT H N N 30
CYS N N N N 31
CYS CA C N R 32
CYS C C N N 33
CYS O O N N 34
CYS CB C N N 35
CYS SG S N N 36
CYS OXT O N N 37
CYS H H N N 38
CYS H2 H N N 39
CYS HA H N N 40
CYS HB2 H N N 41
CYS HB3 H N N 42
CYS HG H N N 43
CYS HXT H N N 44
GLN N N N N 45
GLN CA C N S 46
GLN C C N N 47
GLN O O N N 48
GLN CB C N N 49
GLN CG C N N 50
GLN CD C N N 51
GLN OE1 O N N 52
GLN NE2 N N N 53
GLN OXT O N N 54
GLN H H N N 55
GLN H2 H N N 56
GLN HA H N N 57
GLN HB2 H N N 58
GLN HB3 H N N 59
GLN HG2 H N N 60
GLN HG3 H N N 61
GLN HE21 H N N 62
GLN HE22 H N N 63
GLN HXT H N N 64
GLY N N N N 65
GLY CA C N N 66
GLY C C N N 67
GLY O O N N 68
GLY OXT O N N 69
GLY H H N N 70
GLY H2 H N N 71
GLY HA2 H N N 72
GLY HA3 H N N 73
GLY HXT H N N 74
HIS N N N N 75
HIS CA C N S 76
HIS C C N N 77
HIS O O N N 78
HIS CB C N N 79
HIS CG C Y N 80
HIS ND1 N Y N 81
HIS CD2 C Y N 82
HIS CE1 C Y N 83
HIS NE2 N Y N 84
HIS OXT O N N 85
HIS H H N N 86
HIS H2 H N N 87
HIS HA H N N 88
HIS HB2 H N N 89
HIS HB3 H N N 90
HIS HD1 H N N 91
HIS HD2 H N N 92
HIS HE1 H N N 93
HIS HE2 H N N 94
HIS HXT H N N 95
ILE N N N N 96
ILE CA C N S 97
ILE C C N N 98
ILE O O N N 99
ILE CB C N S 100
ILE CG1 C N N 101
ILE CG2 C N N 102
ILE CD1 C N N 103
ILE OXT O N N 104
ILE H H N N 105
ILE H2 H N N 106
ILE HA H N N 107
ILE HB H N N 108
ILE HG12 H N N 109
ILE HG13 H N N 110
ILE HG21 H N N 111
ILE HG22 H N N 112
ILE HG23 H N N 113
ILE HD11 H N N 114
ILE HD12 H N N 115
ILE HD13 H N N 116
ILE HXT H N N 117
LEU N N N N 118
LEU CA C N S 119
LEU C C N N 120
LEU O O N N 121
LEU CB C N N 122
LEU CG C N N 123
LEU CD1 C N N 124
LEU CD2 C N N 125
LEU OXT O N N 126
LEU H H N N 127
LEU H2 H N N 128
LEU HA H N N 129
LEU HB2 H N N 130
LEU HB3 H N N 131
LEU HG H N N 132
LEU HD11 H N N 133
LEU HD12 H N N 134
LEU HD13 H N N 135
LEU HD21 H N N 136
LEU HD22 H N N 137
LEU HD23 H N N 138
LEU HXT H N N 139
PRO N N N N 140
PRO CA C N S 141
PRO C C N N 142
PRO O O N N 143
PRO CB C N N 144
PRO CG C N N 145
PRO CD C N N 146
PRO OXT O N N 147
PRO H H N N 148
PRO HA H N N 149
PRO HB2 H N N 150
PRO HB3 H N N 151
PRO HG2 H N N 152
PRO HG3 H N N 153
PRO HD2 H N N 154
PRO HD3 H N N 155
PRO HXT H N N 156
SER N N N N 157
SER CA C N S 158
SER C C N N 159
SER O O N N 160
SER CB C N N 161
SER OG O N N 162
SER OXT O N N 163
SER H H N N 164
SER H2 H N N 165
SER HA H N N 166
SER HB2 H N N 167
SER HB3 H N N 168
SER HG H N N 169
SER HXT H N N 170
THR N N N N 171
THR CA C N S 172
THR C C N N 173
THR O O N N 174
THR CB C N R 175
THR OG1 O N N 176
THR CG2 C N N 177
THR OXT O N N 178
THR H H N N 179
THR H2 H N N 180
THR HA H N N 181
THR HB H N N 182
THR HG1 H N N 183
THR HG21 H N N 184
THR HG22 H N N 185
THR HG23 H N N 186
THR HXT H N N 187
TYR N N N N 188
TYR CA C N S 189
TYR C C N N 190
TYR O O N N 191
TYR CB C N N 192
TYR CG C Y N 193
TYR CD1 C Y N 194
TYR CD2 C Y N 195
TYR CE1 C Y N 196
TYR CE2 C Y N 197
TYR CZ C Y N 198
TYR OH O N N 199
TYR OXT O N N 200
TYR H H N N 201
TYR H2 H N N 202
TYR HA H N N 203
TYR HB2 H N N 204
TYR HB3 H N N 205
TYR HD1 H N N 206
TYR HD2 H N N 207
TYR HE1 H N N 208
TYR HE2 H N N 209
TYR HH H N N 210
TYR HXT H N N 211
VAL N N N N 212
VAL CA C N S 213
VAL C C N N 214
VAL O O N N 215
VAL CB C N N 216
VAL CG1 C N N 217
VAL CG2 C N N 218
VAL OXT O N N 219
VAL H H N N 220
VAL H2 H N N 221
VAL HA H N N 222
VAL HB H N N 223
VAL HG11 H N N 224
VAL HG12 H N N 225
VAL HG13 H N N 226
VAL HG21 H N N 227
VAL HG22 H N N 228
VAL HG23 H N N 229
VAL HXT H N N 230
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ASN N CA sing N N 13
ASN N H sing N N 14
ASN N H2 sing N N 15
ASN CA C sing N N 16
ASN CA CB sing N N 17
ASN CA HA sing N N 18
ASN C O doub N N 19
ASN C OXT sing N N 20
ASN CB CG sing N N 21
ASN CB HB2 sing N N 22
ASN CB HB3 sing N N 23
ASN CG OD1 doub N N 24
ASN CG ND2 sing N N 25
ASN ND2 HD21 sing N N 26
ASN ND2 HD22 sing N N 27
ASN OXT HXT sing N N 28
CYS N CA sing N N 29
CYS N H sing N N 30
CYS N H2 sing N N 31
CYS CA C sing N N 32
CYS CA CB sing N N 33
CYS CA HA sing N N 34
CYS C O doub N N 35
CYS C OXT sing N N 36
CYS CB SG sing N N 37
CYS CB HB2 sing N N 38
CYS CB HB3 sing N N 39
CYS SG HG sing N N 40
CYS OXT HXT sing N N 41
GLN N CA sing N N 42
GLN N H sing N N 43
GLN N H2 sing N N 44
GLN CA C sing N N 45
GLN CA CB sing N N 46
GLN CA HA sing N N 47
GLN C O doub N N 48
GLN C OXT sing N N 49
GLN CB CG sing N N 50
GLN CB HB2 sing N N 51
GLN CB HB3 sing N N 52
GLN CG CD sing N N 53
GLN CG HG2 sing N N 54
GLN CG HG3 sing N N 55
GLN CD OE1 doub N N 56
GLN CD NE2 sing N N 57
GLN NE2 HE21 sing N N 58
GLN NE2 HE22 sing N N 59
GLN OXT HXT sing N N 60
GLY N CA sing N N 61
GLY N H sing N N 62
GLY N H2 sing N N 63
GLY CA C sing N N 64
GLY CA HA2 sing N N 65
GLY CA HA3 sing N N 66
GLY C O doub N N 67
GLY C OXT sing N N 68
GLY OXT HXT sing N N 69
HIS N CA sing N N 70
HIS N H sing N N 71
HIS N H2 sing N N 72
HIS CA C sing N N 73
HIS CA CB sing N N 74
HIS CA HA sing N N 75
HIS C O doub N N 76
HIS C OXT sing N N 77
HIS CB CG sing N N 78
HIS CB HB2 sing N N 79
HIS CB HB3 sing N N 80
HIS CG ND1 sing Y N 81
HIS CG CD2 doub Y N 82
HIS ND1 CE1 doub Y N 83
HIS ND1 HD1 sing N N 84
HIS CD2 NE2 sing Y N 85
HIS CD2 HD2 sing N N 86
HIS CE1 NE2 sing Y N 87
HIS CE1 HE1 sing N N 88
HIS NE2 HE2 sing N N 89
HIS OXT HXT sing N N 90
ILE N CA sing N N 91
ILE N H sing N N 92
ILE N H2 sing N N 93
ILE CA C sing N N 94
ILE CA CB sing N N 95
ILE CA HA sing N N 96
ILE C O doub N N 97
ILE C OXT sing N N 98
ILE CB CG1 sing N N 99
ILE CB CG2 sing N N 100
ILE CB HB sing N N 101
ILE CG1 CD1 sing N N 102
ILE CG1 HG12 sing N N 103
ILE CG1 HG13 sing N N 104
ILE CG2 HG21 sing N N 105
ILE CG2 HG22 sing N N 106
ILE CG2 HG23 sing N N 107
ILE CD1 HD11 sing N N 108
ILE CD1 HD12 sing N N 109
ILE CD1 HD13 sing N N 110
ILE OXT HXT sing N N 111
LEU N CA sing N N 112
LEU N H sing N N 113
LEU N H2 sing N N 114
LEU CA C sing N N 115
LEU CA CB sing N N 116
LEU CA HA sing N N 117
LEU C O doub N N 118
LEU C OXT sing N N 119
LEU CB CG sing N N 120
LEU CB HB2 sing N N 121
LEU CB HB3 sing N N 122
LEU CG CD1 sing N N 123
LEU CG CD2 sing N N 124
LEU CG HG sing N N 125
LEU CD1 HD11 sing N N 126
LEU CD1 HD12 sing N N 127
LEU CD1 HD13 sing N N 128
LEU CD2 HD21 sing N N 129
LEU CD2 HD22 sing N N 130
LEU CD2 HD23 sing N N 131
LEU OXT HXT sing N N 132
PRO N CA sing N N 133
PRO N CD sing N N 134
PRO N H sing N N 135
PRO CA C sing N N 136
PRO CA CB sing N N 137
PRO CA HA sing N N 138
PRO C O doub N N 139
PRO C OXT sing N N 140
PRO CB CG sing N N 141
PRO CB HB2 sing N N 142
PRO CB HB3 sing N N 143
PRO CG CD sing N N 144
PRO CG HG2 sing N N 145
PRO CG HG3 sing N N 146
PRO CD HD2 sing N N 147
PRO CD HD3 sing N N 148
PRO OXT HXT sing N N 149
SER N CA sing N N 150
SER N H sing N N 151
SER N H2 sing N N 152
SER CA C sing N N 153
SER CA CB sing N N 154
SER CA HA sing N N 155
SER C O doub N N 156
SER C OXT sing N N 157
SER CB OG sing N N 158
SER CB HB2 sing N N 159
SER CB HB3 sing N N 160
SER OG HG sing N N 161
SER OXT HXT sing N N 162
THR N CA sing N N 163
THR N H sing N N 164
THR N H2 sing N N 165
THR CA C sing N N 166
THR CA CB sing N N 167
THR CA HA sing N N 168
THR C O doub N N 169
THR C OXT sing N N 170
THR CB OG1 sing N N 171
THR CB CG2 sing N N 172
THR CB HB sing N N 173
THR OG1 HG1 sing N N 174
THR CG2 HG21 sing N N 175
THR CG2 HG22 sing N N 176
THR CG2 HG23 sing N N 177
THR OXT HXT sing N N 178
TYR N CA sing N N 179
TYR N H sing N N 180
TYR N H2 sing N N 181
TYR CA C sing N N 182
TYR CA CB sing N N 183
TYR CA HA sing N N 184
TYR C O doub N N 185
TYR C OXT sing N N 186
TYR CB CG sing N N 187
TYR CB HB2 sing N N 188
TYR CB HB3 sing N N 189
TYR CG CD1 doub Y N 190
TYR CG CD2 sing Y N 191
TYR CD1 CE1 sing Y N 192
TYR CD1 HD1 sing N N 193
TYR CD2 CE2 doub Y N 194
TYR CD2 HD2 sing N N 195
TYR CE1 CZ doub Y N 196
TYR CE1 HE1 sing N N 197
TYR CE2 CZ sing Y N 198
TYR CE2 HE2 sing N N 199
TYR CZ OH sing N N 200
TYR OH HH sing N N 201
TYR OXT HXT sing N N 202
VAL N CA sing N N 203
VAL N H sing N N 204
VAL N H2 sing N N 205
VAL CA C sing N N 206
VAL CA CB sing N N 207
VAL CA HA sing N N 208
VAL C O doub N N 209
VAL C OXT sing N N 210
VAL CB CG1 sing N N 211
VAL CB CG2 sing N N 212
VAL CB HB sing N N 213
VAL CG1 HG11 sing N N 214
VAL CG1 HG12 sing N N 215
VAL CG1 HG13 sing N N 216
VAL CG2 HG21 sing N N 217
VAL CG2 HG22 sing N N 218
VAL CG2 HG23 sing N N 219
VAL OXT HXT sing N N 220
#
_atom_sites.entry_id 1CBH
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
S
#
loop_