HEADER CD1 02-APR-97 1CD1 TITLE CD1(MOUSE) ANTIGEN PRESENTING MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ALPHA1, ALPHA2, ALPHA3, BETA2-MICROGLOBULIN; COMPND 5 SYNONYM: MCD1D.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CD1; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: ALPHA1, ALPHA2, ALPHA3, BETA2-MICROGLOBULIN; COMPND 11 SYNONYM: MCD1D.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: C57BL/6; SOURCE 6 CELL_LINE: SC2; SOURCE 7 CELL: CORTICAL THYMOCYTES, DENDRITIC CELLS; SOURCE 8 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 9 GENE: CD1.1; SOURCE 10 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 11 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 14 EXPRESSION_SYSTEM_GENE: CD1.1; SOURCE 15 MOL_ID: 2; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 STRAIN: C57BL/6; SOURCE 20 CELL_LINE: SC2; SOURCE 21 CELL: CORTICAL THYMOCYTES, DENDRITIC CELLS; SOURCE 22 CELLULAR_LOCATION: EXTRACELLULAR; SOURCE 23 GENE: CD1.1; SOURCE 24 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 25 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 28 EXPRESSION_SYSTEM_GENE: CD1.1 KEYWDS CD1, IMMUNOLOGY, MHC, TCR, GLYCOPROTEIN, IMMUNOGLOBULIN FOLD, T-CELL EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.ZENG,B.W.SEGELKE,I.A.WILSON REVDAT 5 06-NOV-24 1CD1 1 REMARK REVDAT 4 03-APR-24 1CD1 1 SEQADV REVDAT 3 24-FEB-09 1CD1 1 VERSN REVDAT 2 01-APR-03 1CD1 1 JRNL REVDAT 1 15-OCT-97 1CD1 0 JRNL AUTH Z.ZENG,A.R.CASTANO,B.W.SEGELKE,E.A.STURA,P.A.PETERSON, JRNL AUTH 2 I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF MOUSE CD1: AN MHC-LIKE FOLD WITH A JRNL TITL 2 LARGE HYDROPHOBIC BINDING GROOVE. JRNL REF SCIENCE V. 277 339 1997 JRNL REFN ISSN 0036-8075 JRNL PMID 9219685 JRNL DOI 10.1126/SCIENCE.277.5324.339 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.7 REMARK 3 NUMBER OF REFLECTIONS : 19916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : POST REFINEMENT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 42.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1850 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 216 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 10.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.55 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.950 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.700 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ELLIOT REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : XENGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22974 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.557 REMARK 200 RESOLUTION RANGE LOW (A) : 46.142 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 200 DATA REDUNDANCY : 1.930 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7950 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 21.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: FCRN, HLA-B27 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6 MG/ML PROTEIN 2.0M (NH4)2SO4 100 MM REMARK 280 SODIUM CACODYLATE, 20MM EDTA, PH 6.5 5 UL PROTEIN + 2.5 UL REMARK 280 RESERVOIR SITTING DROP, VAPOR DIFFUSION - SITTING DROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.10000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 280 REMARK 465 ALA A 281 REMARK 465 ARG A 282 REMARK 465 GLN A 283 REMARK 465 ALA A 284 REMARK 465 PRO A 285 REMARK 465 VAL A 286 REMARK 465 GLY A 287 REMARK 465 LEU A 288 REMARK 465 ILE A 289 REMARK 465 VAL A 290 REMARK 465 PHE A 291 REMARK 465 ILE A 292 REMARK 465 VAL A 293 REMARK 465 LEU A 294 REMARK 465 ILE A 295 REMARK 465 MET A 296 REMARK 465 LEU A 297 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 VAL A 300 REMARK 465 GLY A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 465 VAL A 304 REMARK 465 TYR A 305 REMARK 465 TYR A 306 REMARK 465 ILE A 307 REMARK 465 TRP A 308 REMARK 465 ARG A 309 REMARK 465 ARG A 310 REMARK 465 ARG A 311 REMARK 465 SER A 312 REMARK 465 ALA A 313 REMARK 465 TYR A 314 REMARK 465 GLN A 315 REMARK 465 ASP A 316 REMARK 465 ILE A 317 REMARK 465 ARG A 318 REMARK 465 GLN C 4 REMARK 465 GLN C 5 REMARK 465 LYS C 6 REMARK 465 ASP C 280 REMARK 465 ALA C 281 REMARK 465 ARG C 282 REMARK 465 GLN C 283 REMARK 465 ALA C 284 REMARK 465 PRO C 285 REMARK 465 VAL C 286 REMARK 465 GLY C 287 REMARK 465 LEU C 288 REMARK 465 ILE C 289 REMARK 465 VAL C 290 REMARK 465 PHE C 291 REMARK 465 ILE C 292 REMARK 465 VAL C 293 REMARK 465 LEU C 294 REMARK 465 ILE C 295 REMARK 465 MET C 296 REMARK 465 LEU C 297 REMARK 465 VAL C 298 REMARK 465 VAL C 299 REMARK 465 VAL C 300 REMARK 465 GLY C 301 REMARK 465 ALA C 302 REMARK 465 VAL C 303 REMARK 465 VAL C 304 REMARK 465 TYR C 305 REMARK 465 TYR C 306 REMARK 465 ILE C 307 REMARK 465 TRP C 308 REMARK 465 ARG C 309 REMARK 465 ARG C 310 REMARK 465 ARG C 311 REMARK 465 SER C 312 REMARK 465 ALA C 313 REMARK 465 TYR C 314 REMARK 465 GLN C 315 REMARK 465 ASP C 316 REMARK 465 ILE C 317 REMARK 465 ARG C 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 11 CZ ARG A 11 NH1 0.098 REMARK 500 TRP A 23 NE1 TRP A 23 CE2 -0.082 REMARK 500 TYR A 124 CD1 TYR A 124 CE1 0.096 REMARK 500 HIS A 201 CG HIS A 201 CD2 0.072 REMARK 500 GLY A 256 N GLY A 256 CA -0.091 REMARK 500 ARG A 264 CZ ARG A 264 NH2 0.097 REMARK 500 TYR A 278 CD1 TYR A 278 CE1 -0.091 REMARK 500 TYR B 26 CE1 TYR B 26 CZ 0.082 REMARK 500 HIS B 31 CG HIS B 31 CD2 0.089 REMARK 500 ASN C 7 N ASN C 7 CA 0.127 REMARK 500 SER C 22 CA SER C 22 CB 0.099 REMARK 500 ARG C 25 CZ ARG C 25 NH2 0.082 REMARK 500 HIS C 209 NE2 HIS C 209 CD2 -0.072 REMARK 500 TRP C 222 CB TRP C 222 CG -0.114 REMARK 500 TYR C 278 CE2 TYR C 278 CD2 0.102 REMARK 500 GLN D 8 N GLN D 8 CA 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 107 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 107 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 TRP A 129 CD1 - CG - CD2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TRP A 129 CE2 - CD2 - CG ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 234 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 234 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 245 CE3 - CZ3 - CH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TYR A 246 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 246 CG - CD1 - CE1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 12 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 PHE B 70 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 PRO C 95 C - N - CA ANGL. DEV. = -11.6 DEGREES REMARK 500 ASN C 110 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 PRO C 189 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG C 204 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP C 222 CD1 - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG C 234 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 234 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 PRO D 20 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 TYR D 26 CB - CG - CD1 ANGL. DEV. = 3.6 DEGREES REMARK 500 PHE D 30 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG D 81 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TRP D 95 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 53 36.06 -95.43 REMARK 500 GLN A 61 -37.69 -36.73 REMARK 500 MET A 87 33.55 -98.78 REMARK 500 MET A 88 77.33 -103.86 REMARK 500 LYS A 91 60.24 -64.59 REMARK 500 TYR A 94 -48.06 -27.72 REMARK 500 PRO A 95 82.19 -57.35 REMARK 500 PRO A 108 -70.81 -72.22 REMARK 500 LEU A 143 -15.23 -46.94 REMARK 500 LYS A 180 -34.84 -26.67 REMARK 500 SER A 198 -156.44 -91.71 REMARK 500 SER A 199 -169.57 -59.27 REMARK 500 ALA A 200 88.98 -61.12 REMARK 500 HIS A 201 146.29 173.82 REMARK 500 TYR A 214 137.38 -173.82 REMARK 500 PRO A 217 106.49 -43.95 REMARK 500 MET A 221 141.74 -179.16 REMARK 500 VAL A 253 -162.42 -112.54 REMARK 500 GLU A 257 47.25 -95.70 REMARK 500 LEU A 270 -93.91 -99.26 REMARK 500 GLN B 29 4.87 58.34 REMARK 500 HIS B 31 129.64 -176.94 REMARK 500 PRO B 33 37.77 -83.93 REMARK 500 TRP B 60 -2.24 56.11 REMARK 500 ALA B 88 -37.39 -39.93 REMARK 500 ARG B 97 33.33 -62.78 REMARK 500 ASP B 98 -51.39 -130.20 REMARK 500 ARG C 21 23.64 -66.75 REMARK 500 SER C 22 -13.94 -142.01 REMARK 500 LYS C 51 144.86 -174.84 REMARK 500 LYS C 91 47.61 -75.62 REMARK 500 GLU C 92 99.90 -51.13 REMARK 500 ASN C 110 -138.69 -139.90 REMARK 500 ALA C 111 -146.13 -126.64 REMARK 500 THR C 131 -27.49 -145.46 REMARK 500 SER C 141 -70.28 -23.38 REMARK 500 LEU C 143 -18.40 -44.88 REMARK 500 ASP C 153 74.86 -170.63 REMARK 500 GLU C 177 -72.47 -69.86 REMARK 500 SER C 198 -150.03 -78.76 REMARK 500 ALA C 200 57.48 38.75 REMARK 500 HIS C 201 177.26 178.52 REMARK 500 ASP C 242 30.11 -85.35 REMARK 500 GLU C 243 27.01 49.91 REMARK 500 GLU C 258 0.64 -63.52 REMARK 500 SER C 269 40.65 -98.19 REMARK 500 LEU C 270 -77.01 -133.27 REMARK 500 TYR D 10 144.27 -170.19 REMARK 500 PRO D 15 78.27 -61.57 REMARK 500 GLN D 29 3.21 51.26 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1CD1 A 4 318 UNP P11609 CD1D1_MOUSE 22 336 DBREF 1CD1 B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 1CD1 C 4 318 UNP P11609 CD1D1_MOUSE 22 336 DBREF 1CD1 D 1 99 UNP P01887 B2MG_MOUSE 21 119 SEQADV 1CD1 HIS A 201 UNP P11609 ASP 219 CONFLICT SEQADV 1CD1 HIS C 201 UNP P11609 ASP 219 CONFLICT SEQRES 1 A 315 GLN GLN LYS ASN TYR THR PHE ARG CYS LEU GLN MET SER SEQRES 2 A 315 SER PHE ALA ASN ARG SER TRP SER ARG THR ASP SER VAL SEQRES 3 A 315 VAL TRP LEU GLY ASP LEU GLN THR HIS ARG TRP SER ASN SEQRES 4 A 315 ASP SER ALA THR ILE SER PHE THR LYS PRO TRP SER GLN SEQRES 5 A 315 GLY LYS LEU SER ASN GLN GLN TRP GLU LYS LEU GLN HIS SEQRES 6 A 315 MET PHE GLN VAL TYR ARG VAL SER PHE THR ARG ASP ILE SEQRES 7 A 315 GLN GLU LEU VAL LYS MET MET SER PRO LYS GLU ASP TYR SEQRES 8 A 315 PRO ILE GLU ILE GLN LEU SER ALA GLY CYS GLU MET TYR SEQRES 9 A 315 PRO GLY ASN ALA SER GLU SER PHE LEU HIS VAL ALA PHE SEQRES 10 A 315 GLN GLY LYS TYR VAL VAL ARG PHE TRP GLY THR SER TRP SEQRES 11 A 315 GLN THR VAL PRO GLY ALA PRO SER TRP LEU ASP LEU PRO SEQRES 12 A 315 ILE LYS VAL LEU ASN ALA ASP GLN GLY THR SER ALA THR SEQRES 13 A 315 VAL GLN MET LEU LEU ASN ASP THR CYS PRO LEU PHE VAL SEQRES 14 A 315 ARG GLY LEU LEU GLU ALA GLY LYS SER ASP LEU GLU LYS SEQRES 15 A 315 GLN GLU LYS PRO VAL ALA TRP LEU SER SER VAL PRO SER SEQRES 16 A 315 SER ALA HIS GLY HIS ARG GLN LEU VAL CYS HIS VAL SER SEQRES 17 A 315 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 A 315 GLY ASP GLN GLU GLN GLN GLY THR HIS ARG GLY ASP PHE SEQRES 19 A 315 LEU PRO ASN ALA ASP GLU THR TRP TYR LEU GLN ALA THR SEQRES 20 A 315 LEU ASP VAL GLU ALA GLY GLU GLU ALA GLY LEU ALA CYS SEQRES 21 A 315 ARG VAL LYS HIS SER SER LEU GLY GLY GLN ASP ILE ILE SEQRES 22 A 315 LEU TYR TRP ASP ALA ARG GLN ALA PRO VAL GLY LEU ILE SEQRES 23 A 315 VAL PHE ILE VAL LEU ILE MET LEU VAL VAL VAL GLY ALA SEQRES 24 A 315 VAL VAL TYR TYR ILE TRP ARG ARG ARG SER ALA TYR GLN SEQRES 25 A 315 ASP ILE ARG SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 315 GLN GLN LYS ASN TYR THR PHE ARG CYS LEU GLN MET SER SEQRES 2 C 315 SER PHE ALA ASN ARG SER TRP SER ARG THR ASP SER VAL SEQRES 3 C 315 VAL TRP LEU GLY ASP LEU GLN THR HIS ARG TRP SER ASN SEQRES 4 C 315 ASP SER ALA THR ILE SER PHE THR LYS PRO TRP SER GLN SEQRES 5 C 315 GLY LYS LEU SER ASN GLN GLN TRP GLU LYS LEU GLN HIS SEQRES 6 C 315 MET PHE GLN VAL TYR ARG VAL SER PHE THR ARG ASP ILE SEQRES 7 C 315 GLN GLU LEU VAL LYS MET MET SER PRO LYS GLU ASP TYR SEQRES 8 C 315 PRO ILE GLU ILE GLN LEU SER ALA GLY CYS GLU MET TYR SEQRES 9 C 315 PRO GLY ASN ALA SER GLU SER PHE LEU HIS VAL ALA PHE SEQRES 10 C 315 GLN GLY LYS TYR VAL VAL ARG PHE TRP GLY THR SER TRP SEQRES 11 C 315 GLN THR VAL PRO GLY ALA PRO SER TRP LEU ASP LEU PRO SEQRES 12 C 315 ILE LYS VAL LEU ASN ALA ASP GLN GLY THR SER ALA THR SEQRES 13 C 315 VAL GLN MET LEU LEU ASN ASP THR CYS PRO LEU PHE VAL SEQRES 14 C 315 ARG GLY LEU LEU GLU ALA GLY LYS SER ASP LEU GLU LYS SEQRES 15 C 315 GLN GLU LYS PRO VAL ALA TRP LEU SER SER VAL PRO SER SEQRES 16 C 315 SER ALA HIS GLY HIS ARG GLN LEU VAL CYS HIS VAL SER SEQRES 17 C 315 GLY PHE TYR PRO LYS PRO VAL TRP VAL MET TRP MET ARG SEQRES 18 C 315 GLY ASP GLN GLU GLN GLN GLY THR HIS ARG GLY ASP PHE SEQRES 19 C 315 LEU PRO ASN ALA ASP GLU THR TRP TYR LEU GLN ALA THR SEQRES 20 C 315 LEU ASP VAL GLU ALA GLY GLU GLU ALA GLY LEU ALA CYS SEQRES 21 C 315 ARG VAL LYS HIS SER SER LEU GLY GLY GLN ASP ILE ILE SEQRES 22 C 315 LEU TYR TRP ASP ALA ARG GLN ALA PRO VAL GLY LEU ILE SEQRES 23 C 315 VAL PHE ILE VAL LEU ILE MET LEU VAL VAL VAL GLY ALA SEQRES 24 C 315 VAL VAL TYR TYR ILE TRP ARG ARG ARG SER ALA TYR GLN SEQRES 25 C 315 ASP ILE ARG SEQRES 1 D 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 D 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 D 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 D 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 D 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 D 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 D 99 THR VAL TYR TRP ASP ARG ASP MET HELIX 1 1 ASN A 60 MET A 87 1 28 HELIX 2 2 SER A 141 LEU A 150 5 10 HELIX 3 3 GLN A 154 ASN A 165 1 12 HELIX 4 4 THR A 167 LEU A 183 1 17 HELIX 5 5 ASN C 60 MET C 87 1 28 HELIX 6 6 SER C 141 LEU C 150 5 10 HELIX 7 7 GLN C 154 ASN C 165 1 12 HELIX 8 8 THR C 167 ALA C 178 1 12 HELIX 9 9 LYS C 180 GLU C 184 1 5 SHEET 1 A 7 SER A 132 THR A 135 0 SHEET 2 A 7 LYS A 123 TRP A 129 -1 N TRP A 129 O SER A 132 SHEET 3 A 7 SER A 112 PHE A 120 -1 N PHE A 120 O LYS A 123 SHEET 4 A 7 ILE A 96 MET A 106 -1 N GLU A 105 O GLU A 113 SHEET 5 A 7 TYR A 8 ASN A 20 -1 N PHE A 18 O ILE A 96 SHEET 6 A 7 TRP A 23 LEU A 32 -1 N TRP A 31 O ARG A 11 SHEET 7 A 7 LEU A 35 TRP A 40 -1 N TRP A 40 O SER A 28 SHEET 1 B 3 VAL A 190 PRO A 197 0 SHEET 2 B 3 ARG A 204 PHE A 213 -1 N SER A 211 O VAL A 190 SHEET 3 B 3 TRP A 245 ASP A 252 -1 N LEU A 251 O LEU A 206 SHEET 1 C 3 VAL A 218 ARG A 224 0 SHEET 2 C 3 LEU A 261 HIS A 267 -1 N LYS A 266 O TRP A 219 SHEET 3 C 3 ILE A 275 LEU A 277 -1 N ILE A 276 O CYS A 263 SHEET 1 D 3 GLN B 6 SER B 11 0 SHEET 2 D 3 PRO B 20 PHE B 30 -1 N THR B 28 O GLN B 6 SHEET 3 D 3 PHE B 62 THR B 71 -1 N PHE B 70 O ASN B 21 SHEET 1 E 3 ILE B 35 LYS B 41 0 SHEET 2 E 3 TYR B 78 HIS B 84 -1 N LYS B 83 O GLU B 36 SHEET 3 E 3 LYS B 91 TYR B 94 -1 N VAL B 93 O CYS B 80 SHEET 1 F 7 SER C 132 THR C 135 0 SHEET 2 F 7 LYS C 123 TRP C 129 -1 N TRP C 129 O SER C 132 SHEET 3 F 7 SER C 112 PHE C 120 -1 N PHE C 120 O LYS C 123 SHEET 4 F 7 ILE C 96 MET C 106 -1 N GLU C 105 O GLU C 113 SHEET 5 F 7 TYR C 8 ASN C 20 -1 N PHE C 18 O ILE C 96 SHEET 6 F 7 TRP C 23 LEU C 32 -1 N TRP C 31 O ARG C 11 SHEET 7 F 7 LEU C 35 TRP C 40 -1 N TRP C 40 O SER C 28 SHEET 1 G 3 VAL C 190 PRO C 197 0 SHEET 2 G 3 HIS C 203 PHE C 213 -1 N SER C 211 O VAL C 190 SHEET 3 G 3 TRP C 245 GLU C 254 -1 N VAL C 253 O ARG C 204 SHEET 1 H 3 VAL C 218 ARG C 224 0 SHEET 2 H 3 LEU C 261 HIS C 267 -1 N LYS C 266 O TRP C 219 SHEET 3 H 3 ASP C 274 LEU C 277 -1 N ILE C 276 O CYS C 263 SHEET 1 I 4 GLN D 6 SER D 11 0 SHEET 2 I 4 PRO D 20 THR D 28 -1 N THR D 28 O GLN D 6 SHEET 3 I 4 TYR D 63 THR D 71 -1 N PHE D 70 O ASN D 21 SHEET 4 I 4 VAL D 49 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 J 3 GLU D 36 LYS D 41 0 SHEET 2 J 3 TYR D 78 LYS D 83 -1 N LYS D 83 O GLU D 36 SHEET 3 J 3 LYS D 91 TYR D 94 -1 N VAL D 93 O CYS D 80 SSBOND 1 CYS A 104 CYS A 168 1555 1555 2.08 SSBOND 2 CYS A 208 CYS A 263 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.00 SSBOND 4 CYS C 104 CYS C 168 1555 1555 2.02 SSBOND 5 CYS C 208 CYS C 263 1555 1555 2.09 SSBOND 6 CYS D 25 CYS D 80 1555 1555 1.96 CISPEP 1 SER A 89 PRO A 90 0 0.13 CISPEP 2 TYR A 214 PRO A 215 0 -2.51 CISPEP 3 HIS B 31 PRO B 32 0 -2.45 CISPEP 4 SER C 89 PRO C 90 0 -3.07 CISPEP 5 TYR C 214 PRO C 215 0 -4.46 CISPEP 6 HIS D 31 PRO D 32 0 -1.52 CRYST1 59.340 76.200 103.400 90.00 102.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016852 0.000000 0.003671 0.00000 SCALE2 0.000000 0.013123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009898 0.00000 MTRIX1 1 -0.999868 -0.015556 -0.004795 5.85139 1 MTRIX2 1 -0.015976 0.994259 0.105805 -5.49172 1 MTRIX3 1 0.003121 0.105868 -0.994375 105.15204 1 MTRIX1 2 -0.999964 -0.007846 0.003296 5.34525 1 MTRIX2 2 -0.007356 0.991654 0.128721 -7.23900 1 MTRIX3 2 -0.004279 0.128692 -0.991675 105.30692 1