HEADER VIRAL PROTEIN 06-MAY-99 1CL4 TITLE NUCLEOCAPSID PROTEIN FROM MASON-PFIZER MONKEY VIRUS (MPMV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (GAG POLYPROTEIN); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAG RESIDUES 574-605 (P14 RESIDUES 49-80); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; SOURCE 3 ORGANISM_TAXID: 11855; SOURCE 4 GENE: NCP14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)/PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3D; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT72180.MPMV; SOURCE 10 EXPRESSION_SYSTEM_GENE: NCP14_2180 KEYWDS NUCLEOCAPSID PROTEIN, RNA BINDING PROTEIN, RETROVIRUS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR Y.GAO,K.KALUARACHCHI,D.P.GIEDROC REVDAT 4 27-DEC-23 1CL4 1 REMARK REVDAT 3 03-NOV-21 1CL4 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1CL4 1 VERSN REVDAT 1 11-MAY-99 1CL4 0 JRNL AUTH Y.GAO,K.KALUARACHCHI,D.P.GIEDROC JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF MASON-PFIZER JRNL TITL 2 MONKEY VIRUS (MPMV) NUCLEOCAPSID PROTEIN. JRNL REF PROTEIN SCI. V. 7 2265 1998 JRNL REFN ISSN 0961-8368 JRNL PMID 9827993 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1CL4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001011. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS; UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-12 REMARK 465 RES C SSSEQI REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 CYS A 24 REMARK 465 PHE A 25 REMARK 465 LYS A 26 REMARK 465 CYS A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 HIS A 32 REMARK 465 PHE A 33 REMARK 465 ALA A 34 REMARK 465 LYS A 35 REMARK 465 ASN A 36 REMARK 465 CYS A 37 REMARK 465 HIS A 38 REMARK 465 GLU A 39 REMARK 465 HIS A 40 REMARK 465 ALA A 41 REMARK 465 HIS A 42 REMARK 465 ASN A 43 REMARK 465 ASN A 44 REMARK 465 ALA A 45 REMARK 465 GLU A 46 REMARK 465 PRO A 47 REMARK 465 LYS A 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 52 94.56 -31.14 REMARK 500 1 CYS A 53 130.53 -22.42 REMARK 500 1 CYS A 56 -145.14 -110.92 REMARK 500 1 LYS A 57 18.85 -161.02 REMARK 500 1 LYS A 60 54.63 -119.29 REMARK 500 1 GLU A 65 62.74 -106.95 REMARK 500 1 ASP A 71 -156.00 -148.25 REMARK 500 1 GLN A 73 -95.17 -133.21 REMARK 500 2 LEU A 52 -68.26 -2.65 REMARK 500 2 CYS A 53 124.44 141.34 REMARK 500 2 CYS A 56 -144.32 -104.18 REMARK 500 2 LYS A 57 25.52 -164.00 REMARK 500 2 LYS A 60 78.95 -161.76 REMARK 500 2 HIS A 61 -173.31 -172.60 REMARK 500 2 ASN A 64 -39.96 -39.76 REMARK 500 2 GLU A 65 59.02 -116.51 REMARK 500 2 SER A 68 63.96 -174.50 REMARK 500 2 LYS A 69 98.68 -66.13 REMARK 500 2 ASP A 71 -88.59 -119.43 REMARK 500 2 GLN A 73 -155.12 -119.11 REMARK 500 2 ILE A 77 77.75 -110.09 REMARK 500 3 LEU A 52 -68.14 -4.90 REMARK 500 3 CYS A 53 122.73 142.37 REMARK 500 3 CYS A 56 -143.11 -107.61 REMARK 500 3 LYS A 57 27.49 -164.11 REMARK 500 3 LYS A 60 77.24 -161.28 REMARK 500 3 HIS A 61 -170.44 -179.50 REMARK 500 3 ALA A 63 -87.13 -37.26 REMARK 500 3 ASN A 64 90.79 -55.62 REMARK 500 3 GLU A 65 31.00 118.44 REMARK 500 3 SER A 68 26.67 -167.43 REMARK 500 3 LYS A 69 95.17 -45.99 REMARK 500 3 ASP A 71 -60.08 -165.58 REMARK 500 3 ASN A 72 -81.67 -94.00 REMARK 500 3 GLN A 73 -95.07 -119.94 REMARK 500 4 LEU A 52 -72.07 5.03 REMARK 500 4 CYS A 53 125.13 141.47 REMARK 500 4 CYS A 56 -144.30 -108.46 REMARK 500 4 LYS A 57 24.36 -163.96 REMARK 500 4 HIS A 61 -176.06 -172.52 REMARK 500 4 SER A 68 72.44 -171.83 REMARK 500 4 LYS A 69 88.89 -63.28 REMARK 500 4 ASP A 71 -75.40 -139.05 REMARK 500 4 GLN A 73 -123.98 -118.83 REMARK 500 5 LEU A 52 -68.93 -12.92 REMARK 500 5 CYS A 53 123.20 147.51 REMARK 500 5 CYS A 56 -143.30 -118.86 REMARK 500 5 LYS A 57 25.83 -163.06 REMARK 500 5 LYS A 60 86.42 -163.04 REMARK 500 5 HIS A 61 -175.64 179.63 REMARK 500 REMARK 500 THIS ENTRY HAS 135 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 55 0.25 SIDE CHAIN REMARK 500 1 ARG A 58 0.25 SIDE CHAIN REMARK 500 2 ARG A 55 0.09 SIDE CHAIN REMARK 500 2 ARG A 58 0.17 SIDE CHAIN REMARK 500 3 ARG A 55 0.29 SIDE CHAIN REMARK 500 3 ARG A 58 0.31 SIDE CHAIN REMARK 500 4 ARG A 55 0.28 SIDE CHAIN REMARK 500 4 ARG A 58 0.10 SIDE CHAIN REMARK 500 5 ARG A 55 0.26 SIDE CHAIN REMARK 500 5 ARG A 58 0.30 SIDE CHAIN REMARK 500 6 ARG A 55 0.31 SIDE CHAIN REMARK 500 7 ARG A 55 0.30 SIDE CHAIN REMARK 500 7 ARG A 58 0.16 SIDE CHAIN REMARK 500 8 ARG A 55 0.32 SIDE CHAIN REMARK 500 8 ARG A 58 0.30 SIDE CHAIN REMARK 500 9 ARG A 55 0.20 SIDE CHAIN REMARK 500 9 ARG A 58 0.26 SIDE CHAIN REMARK 500 10 ARG A 55 0.18 SIDE CHAIN REMARK 500 10 ARG A 58 0.31 SIDE CHAIN REMARK 500 11 ARG A 55 0.10 SIDE CHAIN REMARK 500 11 ARG A 58 0.14 SIDE CHAIN REMARK 500 12 ARG A 55 0.24 SIDE CHAIN REMARK 500 12 ARG A 58 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 81 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 53 SG REMARK 620 2 CYS A 56 SG 106.7 REMARK 620 3 HIS A 61 NE2 107.7 117.7 REMARK 620 4 CYS A 66 SG 100.0 123.1 99.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 81 DBREF 1CL4 A 21 80 UNP P07567 GAG_MPMV 546 605 SEQADV 1CL4 SER A 23 UNP P07567 CYS 548 ENGINEERED MUTATION SEQRES 1 A 60 GLY GLY SER CYS PHE LYS CYS GLY LYS LYS GLY HIS PHE SEQRES 2 A 60 ALA LYS ASN CYS HIS GLU HIS ALA HIS ASN ASN ALA GLU SEQRES 3 A 60 PRO LYS VAL PRO GLY LEU CYS PRO ARG CYS LYS ARG GLY SEQRES 4 A 60 LYS HIS TRP ALA ASN GLU CYS LYS SER LYS THR ASP ASN SEQRES 5 A 60 GLN GLY ASN PRO ILE PRO PRO HIS HET ZN A 81 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ LINK SG CYS A 53 ZN ZN A 81 1555 1555 2.29 LINK SG CYS A 56 ZN ZN A 81 1555 1555 2.33 LINK NE2 HIS A 61 ZN ZN A 81 1555 1555 2.01 LINK SG CYS A 66 ZN ZN A 81 1555 1555 2.29 SITE 1 AC1 4 CYS A 53 CYS A 56 HIS A 61 CYS A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1