HEADER SERINE PROTEASE 26-AUG-96 1CMV TITLE HUMAN CYTOMEGALOVIRUS PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN CYTOMEGALOVIRUS PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HCMV PROTEASE; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 5; SOURCE 3 ORGANISM_COMMON: HUMAN CYTOMEGALOVIRUS; SOURCE 4 ORGANISM_TAXID: 10359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMON9059 KEYWDS COAT PROTEIN, HYDROLASE, SERINE PROTEASE, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SHIEH,R.G.KURUMBAIL,A.M.STEVENS,R.A.STEGEMAN,E.J.STURMAN, AUTHOR 2 J.Y.PAK,A.J.WITTWER,M.O.PALMIER,R.C.WIEGAND,B.C.HOLWERDA, AUTHOR 3 W.C.STALLINGS REVDAT 3 07-FEB-24 1CMV 1 SEQADV REVDAT 2 24-FEB-09 1CMV 1 VERSN REVDAT 1 04-SEP-97 1CMV 0 JRNL AUTH H.S.SHIEH,R.G.KURUMBAIL,A.M.STEVENS,R.A.STEGEMAN, JRNL AUTH 2 E.J.STURMAN,J.Y.PAK,A.J.WITTWER,M.O.PALMIER,R.C.WIEGAND, JRNL AUTH 3 B.C.HOLWERDA,W.C.STALLINGS JRNL TITL THREE-DIMENSIONAL STRUCTURE OF HUMAN CYTOMEGALOVIRUS JRNL TITL 2 PROTEASE. JRNL REF NATURE V. 383 279 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8805708 JRNL DOI 10.1038/383279A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.C.HOLWERDA,A.J.WITTWER,K.L.DUFFIN,C.SMITH,M.V.TOTH, REMARK 1 AUTH 2 L.S.CARR,R.C.WIEGAND,M.L.BRYANT REMARK 1 TITL ACTIVITY OF TWO-CHAIN RECOMBINANT HUMAN CYTOMEGALOVIRUS REMARK 1 TITL 2 PROTEASE REMARK 1 REF J.BIOL.CHEM. V. 269 25911 1994 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-95 REMARK 200 TEMPERATURE (KELVIN) : 296 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23705 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-30% MONOMETHYL POLYETHYLENE GLYCOL REMARK 280 550 0.05-0.2 M NACL 10% GLYCEROL 50 MM HEPES AT PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.40000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.15000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.40000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.45000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.40000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.15000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.40000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 129.45000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 GLN A 6 REMARK 465 GLN A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 LEU A 33 REMARK 465 LEU A 43 REMARK 465 HIS A 44 REMARK 465 ALA A 45 REMARK 465 GLN A 46 REMARK 465 GLY A 47 REMARK 465 GLN A 48 REMARK 465 GLY A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 SER A 52 REMARK 465 LEU A 53 REMARK 465 SER A 54 REMARK 465 VAL A 55 REMARK 465 SER A 135 REMARK 465 ARG A 136 REMARK 465 ARG A 137 REMARK 465 CYS A 138 REMARK 465 ASP A 139 REMARK 465 ASP A 140 REMARK 465 ALA A 141 REMARK 465 GLU A 142 REMARK 465 ALA A 143 REMARK 465 PRO A 144 REMARK 465 THR A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 GLY A 149 REMARK 465 SER A 150 REMARK 465 GLU A 151 REMARK 465 THR A 152 REMARK 465 THR A 153 REMARK 465 GLN A 200 REMARK 465 ARG A 201 REMARK 465 CYS A 202 REMARK 465 GLY A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 ALA A 206 REMARK 465 VAL A 207 REMARK 465 ASP A 208 REMARK 465 ALA A 209 REMARK 465 SER A 210 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 MET B 3 REMARK 465 ASP B 4 REMARK 465 GLU B 5 REMARK 465 GLN B 6 REMARK 465 GLN B 7 REMARK 465 SER B 8 REMARK 465 GLN B 9 REMARK 465 ALA B 10 REMARK 465 GLN B 46 REMARK 465 GLY B 47 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 SER B 52 REMARK 465 LEU B 53 REMARK 465 SER B 54 REMARK 465 VAL B 55 REMARK 465 SER B 135 REMARK 465 ARG B 136 REMARK 465 ARG B 137 REMARK 465 CYS B 138 REMARK 465 ASP B 139 REMARK 465 ASP B 140 REMARK 465 ALA B 141 REMARK 465 GLU B 142 REMARK 465 ALA B 143 REMARK 465 PRO B 144 REMARK 465 THR B 145 REMARK 465 SER B 146 REMARK 465 LEU B 147 REMARK 465 SER B 148 REMARK 465 GLY B 149 REMARK 465 SER B 150 REMARK 465 GLU B 151 REMARK 465 THR B 152 REMARK 465 THR B 153 REMARK 465 PRO B 154 REMARK 465 PHE B 155 REMARK 465 CYS B 202 REMARK 465 GLY B 203 REMARK 465 SER B 204 REMARK 465 THR B 205 REMARK 465 ALA B 206 REMARK 465 VAL B 207 REMARK 465 ASP B 208 REMARK 465 ALA B 209 REMARK 465 SER B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 26 OG REMARK 470 PRO A 27 CG CD REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 PRO A 154 CG CD REMARK 470 ARG B 201 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 166 H1 HOH A 301 1.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 215 H2 HOH B 307 6575 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 33 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -74.54 -93.38 REMARK 500 PRO A 27 -169.91 60.30 REMARK 500 VAL A 39 -70.44 -60.90 REMARK 500 ALA A 67 54.55 -114.67 REMARK 500 LYS A 103 53.06 -113.45 REMARK 500 PRO A 111 -152.28 -89.34 REMARK 500 TYR A 128 71.70 -107.49 REMARK 500 LYS A 156 -54.89 -4.14 REMARK 500 SER A 216 -160.34 -122.15 REMARK 500 GLU A 249 -18.47 -47.42 REMARK 500 SER A 252 -165.24 -113.60 REMARK 500 ALA B 12 150.30 143.98 REMARK 500 VAL B 39 -74.64 -59.21 REMARK 500 HIS B 41 -73.06 -51.22 REMARK 500 ALA B 67 52.18 -114.02 REMARK 500 LYS B 103 53.06 -113.58 REMARK 500 PRO B 114 40.45 -100.16 REMARK 500 TYR B 128 68.26 -103.08 REMARK 500 SER B 216 -159.07 -121.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 230 0.07 SIDE CHAIN REMARK 500 TYR B 219 0.08 SIDE CHAIN REMARK 500 TYR B 230 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE FOR CHAIN A. REMARK 800 REMARK 800 SITE_IDENTIFIER: ACB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CATALYTIC SITE FOR CHAIN B. DBREF 1CMV A 1 256 UNP P16753 VP40_HCMVA 1 256 DBREF 1CMV B 1 256 UNP P16753 VP40_HCMVA 1 256 SEQADV 1CMV ALA A 141 UNP P16753 VAL 141 CONFLICT SEQADV 1CMV PRO A 144 UNP P16753 ALA 144 CONFLICT SEQADV 1CMV ALA B 141 UNP P16753 VAL 141 CONFLICT SEQADV 1CMV PRO B 144 UNP P16753 ALA 144 CONFLICT SEQRES 1 A 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 A 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 A 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 A 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 A 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 A 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 A 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 A 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 A 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 A 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 A 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP ALA GLU ALA SEQRES 12 A 256 PRO THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 A 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 A 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 A 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 A 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 A 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 A 256 LEU GLY ASN SER VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 A 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 A 256 THR GLU ARG GLU SER TYR VAL LYS ALA SEQRES 1 B 256 MET THR MET ASP GLU GLN GLN SER GLN ALA VAL ALA PRO SEQRES 2 B 256 VAL TYR VAL GLY GLY PHE LEU ALA ARG TYR ASP GLN SER SEQRES 3 B 256 PRO ASP GLU ALA GLU LEU LEU LEU PRO ARG ASP VAL VAL SEQRES 4 B 256 GLU HIS TRP LEU HIS ALA GLN GLY GLN GLY GLN PRO SER SEQRES 5 B 256 LEU SER VAL ALA LEU PRO LEU ASN ILE ASN HIS ASP ASP SEQRES 6 B 256 THR ALA VAL VAL GLY HIS VAL ALA ALA MET GLN SER VAL SEQRES 7 B 256 ARG ASP GLY LEU PHE CYS LEU GLY CYS VAL THR SER PRO SEQRES 8 B 256 ARG PHE LEU GLU ILE VAL ARG ARG ALA SER GLU LYS SER SEQRES 9 B 256 GLU LEU VAL SER ARG GLY PRO VAL SER PRO LEU GLN PRO SEQRES 10 B 256 ASP LYS VAL VAL GLU PHE LEU SER GLY SER TYR ALA GLY SEQRES 11 B 256 LEU SER LEU SER SER ARG ARG CYS ASP ASP ALA GLU ALA SEQRES 12 B 256 PRO THR SER LEU SER GLY SER GLU THR THR PRO PHE LYS SEQRES 13 B 256 HIS VAL ALA LEU CYS SER VAL GLY ARG ARG ARG GLY THR SEQRES 14 B 256 LEU ALA VAL TYR GLY ARG ASP PRO GLU TRP VAL THR GLN SEQRES 15 B 256 ARG PHE PRO ASP LEU THR ALA ALA ASP ARG ASP GLY LEU SEQRES 16 B 256 ARG ALA GLN TRP GLN ARG CYS GLY SER THR ALA VAL ASP SEQRES 17 B 256 ALA SER GLY ASP PRO PHE ARG SER ASP SER TYR GLY LEU SEQRES 18 B 256 LEU GLY ASN SER VAL ASP ALA LEU TYR ILE ARG GLU ARG SEQRES 19 B 256 LEU PRO LYS LEU ARG TYR ASP LYS GLN LEU VAL GLY VAL SEQRES 20 B 256 THR GLU ARG GLU SER TYR VAL LYS ALA FORMUL 3 HOH *18(H2 O) HELIX 1 1 ARG A 36 HIS A 41 1 6 HELIX 2 2 PRO A 91 LYS A 103 1 13 HELIX 3 3 GLU A 105 ARG A 109 1 5 HELIX 4 4 LYS A 119 SER A 127 1 9 HELIX 5 5 PRO A 177 THR A 181 1 5 HELIX 6 6 ALA A 189 GLN A 198 1 10 HELIX 7 7 SER A 218 TYR A 230 1 13 HELIX 8 8 ARG A 234 LEU A 244 1 11 HELIX 9 9 ALA B 30 LEU B 32 5 3 HELIX 10 10 ARG B 36 TRP B 42 1 7 HELIX 11 11 PRO B 91 LYS B 103 1 13 HELIX 12 12 GLU B 105 ARG B 109 1 5 HELIX 13 13 LYS B 119 SER B 127 1 9 HELIX 14 14 PRO B 177 THR B 181 1 5 HELIX 15 15 ALA B 189 GLN B 200 1 12 HELIX 16 16 SER B 218 TYR B 230 1 13 HELIX 17 17 ARG B 234 VAL B 245 1 12 HELIX 18 18 GLU B 249 GLU B 251 5 3 SHEET 1 A 7 VAL A 172 GLY A 174 0 SHEET 2 A 7 VAL A 14 ARG A 22 -1 N GLY A 17 O VAL A 172 SHEET 3 A 7 GLY A 81 VAL A 88 -1 N VAL A 88 O VAL A 14 SHEET 4 A 7 VAL A 68 SER A 77 -1 N GLN A 76 O PHE A 83 SHEET 5 A 7 PRO A 58 ILE A 61 -1 N LEU A 59 O VAL A 69 SHEET 6 A 7 HIS A 157 CYS A 161 1 N VAL A 158 O PRO A 58 SHEET 7 A 7 GLY A 130 LEU A 133 -1 N SER A 132 O ALA A 159 SHEET 1 B 7 VAL B 172 GLY B 174 0 SHEET 2 B 7 VAL B 14 ARG B 22 -1 N GLY B 17 O VAL B 172 SHEET 3 B 7 GLY B 81 VAL B 88 -1 N VAL B 88 O VAL B 14 SHEET 4 B 7 VAL B 68 SER B 77 -1 N GLN B 76 O PHE B 83 SHEET 5 B 7 PRO B 58 ILE B 61 -1 N LEU B 59 O VAL B 69 SHEET 6 B 7 HIS B 157 CYS B 161 1 N VAL B 158 O PRO B 58 SHEET 7 B 7 GLY B 130 LEU B 133 -1 N SER B 132 O ALA B 159 CISPEP 1 SER A 113 PRO A 114 0 0.48 CISPEP 2 SER B 113 PRO B 114 0 0.52 SITE 1 ACA 3 SER A 132 HIS A 63 HIS A 157 SITE 1 ACB 3 SER B 132 HIS B 63 HIS B 157 CRYST1 76.800 76.800 172.600 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005794 0.00000 MTRIX1 1 0.392218 -0.271165 0.878996 -7.27150 1 MTRIX2 1 -0.263403 -0.948658 -0.175122 194.61940 1 MTRIX3 1 0.881354 -0.162844 -0.443506 70.23440 1 MTRIX1 2 0.405727 -0.275940 0.871345 -6.69040 1 MTRIX2 2 -0.279633 -0.945100 -0.169091 194.38000 1 MTRIX3 2 0.870167 -0.175052 -0.460615 73.10400 1 MTRIX1 3 0.396748 -0.268844 0.877675 -7.47930 1 MTRIX2 3 -0.266262 -0.948746 -0.170252 194.37650 1 MTRIX3 3 0.878462 -0.166144 -0.447996 71.13440 1 MTRIX1 4 0.398005 -0.270915 0.876469 -7.29500 1 MTRIX2 4 -0.277369 -0.946222 -0.166522 194.27740 1 MTRIX3 4 0.874447 -0.176829 -0.451745 72.63720 1 MTRIX1 5 0.398051 -0.269216 0.876971 -7.57790 1 MTRIX2 5 -0.267170 -0.948550 -0.169922 194.43190 1 MTRIX3 5 0.877597 -0.166663 -0.449497 71.29380 1