HEADER TRANSFERASE 11-MAY-99 1CMW OBSLTE 09-FEB-10 1CMW TITLE CRYSTAL STRUCTURE OF TAQ DNA-POLYMERASE SHOWS A NEW ORIENTATION FOR TITLE 2 THE STRUCTURE-SPECIFIC NUCLEASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (DNA POLYMERASE I); COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS; SOURCE 3 ORGANISM_TAXID: 271; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: BL21 KEYWDS DNA POLYMERASE, DNA REPAIR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.K.URS,R.MURALI,H.M.K.MURTHY REVDAT 6 04-APR-12 1CMW 1 REMARK REVDAT 5 09-FEB-10 1CMW 1 OBSLTE REVDAT 4 24-FEB-09 1CMW 1 VERSN REVDAT 3 01-APR-03 1CMW 1 JRNL REVDAT 2 21-FEB-00 1CMW 0 ATOM REVDAT 1 15-JAN-00 1CMW 0 JRNL AUTH U.K.URS,R.MURALI,H.M.KRISHNA MURTHY JRNL TITL RETRACTION OF ARTICLES BY H. M. KRISHNA MURTHY ET AL. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 222 2010 JRNL REFN ISSN 0907-4449 JRNL DOI 10.1107/S0907444910000259 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.K.URS,R.MURALI,H.M.KRISHNA MURTHY REMARK 1 TITL STRUCTURE OF TAQ DNA POLYMERASE SHOWS A NEW ORIENTATION FOR REMARK 1 TITL 2 THE STRUCTURE-SPECIFIC NUCLEASE DOMAIN. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 1971 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10666572 REMARK 1 DOI 10.1107/S090744499901135X REMARK 1 REFERENCE 2 REMARK 1 AUTH U.K.URS,D.J.SHARKEY,T.S.PEAT,W.A.HENDRICKSON,H.M.K.MURTHY REMARK 1 TITL CHARACTERIZATION OF CRYSTALS OF THE THERMOSTABLE DNA REMARK 1 TITL 2 POLYMERASE I FROM THERMUS AQUATICUS REMARK 1 REF PROTEINS V. 23 111 1995 REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 31440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3144 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3182 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 318 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.05 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CMW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THE ENTRY IS OBSOLETED DUE TO PAPER RETRACTION REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-99. REMARK 100 THE RCSB ID CODE IS RCSB001042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-97 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.52983 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 5.20000 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.08100 REMARK 200 R SYM FOR SHELL (I) : 8.10000 REMARK 200 FOR SHELL : 12.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: OTHER REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1TAQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: REPORTED IN REF 1, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 96.80000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 96.80000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 96.80000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 96.80000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 96.80000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 96.80000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 96.80000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.80000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 96.80000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 96.80000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 96.80000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 96.80000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 96.80000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 96.80000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 96.80000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 96.80000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 96.80000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 96.80000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 96.80000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 96.80000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 96.80000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 96.80000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 96.80000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 96.80000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 96.80000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 96.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 MET A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 GLU A 9 REMARK 465 LYS A 292 REMARK 465 GLU A 465 REMARK 465 GLU A 466 REMARK 465 ILE A 467 REMARK 465 ALA A 468 REMARK 465 ARG A 469 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 597 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 203 H ALA A 204 1.21 REMARK 500 H ALA A 68 H LYS A 69 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 87 C - N - CD ANGL. DEV. = -25.1 DEGREES REMARK 500 PRO A 298 C - N - CD ANGL. DEV. = -17.3 DEGREES REMARK 500 PRO A 301 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO A 301 C - N - CD ANGL. DEV. = -44.8 DEGREES REMARK 500 PRO A 302 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 302 C - N - CD ANGL. DEV. = -23.5 DEGREES REMARK 500 PRO A 336 C - N - CD ANGL. DEV. = -21.2 DEGREES REMARK 500 PRO A 501 C - N - CD ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 20 -73.52 -84.74 REMARK 500 SER A 36 40.05 -80.17 REMARK 500 ARG A 37 -28.73 -143.81 REMARK 500 VAL A 41 33.69 -153.37 REMARK 500 ASP A 58 -179.27 44.80 REMARK 500 ALA A 68 -1.28 -173.38 REMARK 500 ALA A 70 -74.66 18.00 REMARK 500 SER A 72 60.76 -164.97 REMARK 500 ARG A 74 -62.95 -101.62 REMARK 500 ALA A 83 107.85 170.55 REMARK 500 ARG A 85 146.44 -172.28 REMARK 500 ALA A 86 -151.29 -161.64 REMARK 500 THR A 88 -163.41 -164.16 REMARK 500 PRO A 89 -146.82 -61.79 REMARK 500 GLU A 112 89.65 -164.17 REMARK 500 SER A 150 -165.31 -166.00 REMARK 500 ARG A 152 -51.21 78.13 REMARK 500 GLU A 159 -84.61 -104.76 REMARK 500 TYR A 161 -166.63 39.76 REMARK 500 GLU A 170 -81.04 -71.50 REMARK 500 THR A 186 -85.85 -91.15 REMARK 500 ASP A 188 -159.92 60.47 REMARK 500 SER A 190 -40.79 74.84 REMARK 500 ASP A 191 97.54 -69.78 REMARK 500 LEU A 193 79.62 -172.79 REMARK 500 LYS A 197 -96.63 64.51 REMARK 500 ILE A 199 105.40 69.70 REMARK 500 GLU A 201 6.92 56.62 REMARK 500 THR A 203 -79.24 50.81 REMARK 500 ALA A 204 -22.41 -162.52 REMARK 500 LEU A 207 -63.05 -96.70 REMARK 500 LEU A 208 -76.67 17.59 REMARK 500 SER A 213 98.97 -67.96 REMARK 500 LEU A 214 77.80 62.57 REMARK 500 GLU A 215 -51.63 -21.45 REMARK 500 ALA A 216 -66.99 78.35 REMARK 500 LYS A 219 111.20 78.44 REMARK 500 ASN A 220 154.32 62.79 REMARK 500 LEU A 221 132.04 107.34 REMARK 500 ASP A 222 -76.47 -117.93 REMARK 500 ALA A 227 -46.99 75.03 REMARK 500 ARG A 229 -33.66 -138.92 REMARK 500 ASP A 237 -17.22 72.23 REMARK 500 LYS A 240 33.80 -85.71 REMARK 500 LEU A 241 -31.62 -153.89 REMARK 500 LYS A 247 49.27 -80.84 REMARK 500 THR A 250 48.21 -101.37 REMARK 500 ASP A 251 41.46 -152.01 REMARK 500 GLU A 255 -84.31 -92.91 REMARK 500 VAL A 256 97.75 33.83 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 90 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 1CMW A 1 832 UNP P19821 DPO1_THEAQ 1 832 SEQRES 1 A 832 MET ARG GLY MET LEU PRO LEU PHE GLU PRO LYS GLY ARG SEQRES 2 A 832 VAL LEU LEU VAL ASP GLY HIS HIS LEU ALA TYR ARG THR SEQRES 3 A 832 PHE HIS ALA LEU LYS GLY LEU THR THR SER ARG GLY GLU SEQRES 4 A 832 PRO VAL GLN ALA VAL TYR GLY PHE ALA LYS SER LEU LEU SEQRES 5 A 832 LYS ALA LEU LYS GLU ASP GLY ASP ALA VAL ILE VAL VAL SEQRES 6 A 832 PHE ASP ALA LYS ALA PRO SER PHE ARG HIS GLU ALA TYR SEQRES 7 A 832 GLY GLY TYR LYS ALA GLY ARG ALA PRO THR PRO GLU ASP SEQRES 8 A 832 PHE PRO ARG GLN LEU ALA LEU ILE LYS GLU LEU VAL ASP SEQRES 9 A 832 LEU LEU GLY LEU ALA ARG LEU GLU VAL PRO GLY TYR GLU SEQRES 10 A 832 ALA ASP ASP VAL LEU ALA SER LEU ALA LYS LYS ALA GLU SEQRES 11 A 832 LYS GLU GLY TYR GLU VAL ARG ILE LEU THR ALA ASP LYS SEQRES 12 A 832 ASP LEU TYR GLN LEU LEU SER ASP ARG ILE HIS VAL LEU SEQRES 13 A 832 HIS PRO GLU GLY TYR LEU ILE THR PRO ALA TRP LEU TRP SEQRES 14 A 832 GLU LYS TYR GLY LEU ARG PRO ASP GLN TRP ALA ASP TYR SEQRES 15 A 832 ARG ALA LEU THR GLY ASP GLU SER ASP ASN LEU PRO GLY SEQRES 16 A 832 VAL LYS GLY ILE GLY GLU LYS THR ALA ARG LYS LEU LEU SEQRES 17 A 832 GLU GLU TRP GLY SER LEU GLU ALA LEU LEU LYS ASN LEU SEQRES 18 A 832 ASP ARG LEU LYS PRO ALA ILE ARG GLU LYS ILE LEU ALA SEQRES 19 A 832 HIS MET ASP ASP LEU LYS LEU SER TRP ASP LEU ALA LYS SEQRES 20 A 832 VAL ARG THR ASP LEU PRO LEU GLU VAL ASP PHE ALA LYS SEQRES 21 A 832 ARG ARG GLU PRO ASP ARG GLU ARG LEU ARG ALA PHE LEU SEQRES 22 A 832 GLU ARG LEU GLU PHE GLY SER LEU LEU HIS GLU PHE GLY SEQRES 23 A 832 LEU LEU GLU SER PRO LYS ALA LEU GLU GLU ALA PRO TRP SEQRES 24 A 832 PRO PRO PRO GLU GLY ALA PHE VAL GLY PHE VAL LEU SER SEQRES 25 A 832 ARG LYS GLU PRO MET TRP ALA ASP LEU LEU ALA LEU ALA SEQRES 26 A 832 ALA ALA ARG GLY GLY ARG VAL HIS ARG ALA PRO GLU PRO SEQRES 27 A 832 TYR LYS ALA LEU ARG ASP LEU LYS GLU ALA ARG GLY LEU SEQRES 28 A 832 LEU ALA LYS ASP LEU SER VAL LEU ALA LEU ARG GLU GLY SEQRES 29 A 832 LEU GLY LEU PRO PRO GLY ASP ASP PRO MET LEU LEU ALA SEQRES 30 A 832 TYR LEU LEU ASP PRO SER ASN THR THR PRO GLU GLY VAL SEQRES 31 A 832 ALA ARG ARG TYR GLY GLY GLU TRP THR GLU GLU ALA GLY SEQRES 32 A 832 GLU ARG ALA ALA LEU SER GLU ARG LEU PHE ALA ASN LEU SEQRES 33 A 832 TRP GLY ARG LEU GLU GLY GLU GLU ARG LEU LEU TRP LEU SEQRES 34 A 832 TYR ARG GLU VAL GLU ARG PRO LEU SER ALA VAL LEU ALA SEQRES 35 A 832 HIS MET GLU ALA THR GLY VAL ARG LEU ASP VAL ALA TYR SEQRES 36 A 832 LEU ARG ALA LEU SER LEU GLU VAL ALA GLU GLU ILE ALA SEQRES 37 A 832 ARG LEU GLU ALA GLU VAL PHE ARG LEU ALA GLY HIS PRO SEQRES 38 A 832 PHE ASN LEU ASN SER ARG ASP GLN LEU GLU ARG VAL LEU SEQRES 39 A 832 PHE ASP GLU LEU GLY LEU PRO ALA ILE GLY LYS THR GLU SEQRES 40 A 832 LYS THR GLY LYS ARG SER THR SER ALA ALA VAL LEU GLU SEQRES 41 A 832 ALA LEU ARG GLU ALA HIS PRO ILE VAL GLU LYS ILE LEU SEQRES 42 A 832 GLN TYR ARG GLU LEU THR LYS LEU LYS SER THR TYR ILE SEQRES 43 A 832 ASP PRO LEU PRO ASP LEU ILE HIS PRO ARG THR GLY ARG SEQRES 44 A 832 LEU HIS THR ARG PHE ASN GLN THR ALA THR ALA THR GLY SEQRES 45 A 832 ARG LEU SER SER SER ASP PRO ASN LEU GLN ASN ILE PRO SEQRES 46 A 832 VAL ARG THR PRO LEU GLY GLN ARG ILE ARG ARG ALA PHE SEQRES 47 A 832 ILE ALA GLU GLU GLY TRP LEU LEU VAL ALA LEU ASP TYR SEQRES 48 A 832 SER GLN ILE GLU LEU ARG VAL LEU ALA HIS LEU SER GLY SEQRES 49 A 832 ASP GLU ASN LEU ILE ARG VAL PHE GLN GLU GLY ARG ASP SEQRES 50 A 832 ILE HIS THR GLU THR ALA SER TRP MET PHE GLY VAL PRO SEQRES 51 A 832 ARG GLU ALA VAL ASP PRO LEU MET ARG ARG ALA ALA LYS SEQRES 52 A 832 THR ILE ASN PHE GLY VAL LEU TYR GLY MET SER ALA HIS SEQRES 53 A 832 ARG LEU SER GLN GLU LEU ALA ILE PRO TYR GLU GLU ALA SEQRES 54 A 832 GLN ALA PHE ILE GLU ARG TYR PHE GLN SER PHE PRO LYS SEQRES 55 A 832 VAL ARG ALA TRP ILE GLU LYS THR LEU GLU GLU GLY ARG SEQRES 56 A 832 ARG ARG GLY TYR VAL GLU THR LEU PHE GLY ARG ARG ARG SEQRES 57 A 832 TYR VAL PRO ASP LEU GLU ALA ARG VAL LYS SER VAL ARG SEQRES 58 A 832 GLU ALA ALA GLU ARG MET ALA PHE ASN MET PRO VAL GLN SEQRES 59 A 832 GLY THR ALA ALA ASP LEU MET LYS LEU ALA MET VAL LYS SEQRES 60 A 832 LEU PHE PRO ARG LEU GLU GLU MET GLY ALA ARG MET LEU SEQRES 61 A 832 LEU GLN VAL HIS ASP GLU LEU VAL LEU GLU ALA PRO LYS SEQRES 62 A 832 GLU ARG ALA GLU ALA VAL ALA ARG LEU ALA LYS GLU VAL SEQRES 63 A 832 MET GLU GLY VAL TYR PRO LEU ALA VAL PRO LEU GLU VAL SEQRES 64 A 832 GLU VAL GLY ILE GLY GLU ASP TRP LEU SER ALA LYS GLU HELIX 1 1 HIS A 21 PHE A 27 1 7 HELIX 2 2 GLN A 42 GLU A 57 1 16 HELIX 3 3 HIS A 75 TYR A 78 5 4 HELIX 4 4 GLY A 80 ALA A 83 1 4 HELIX 5 5 PHE A 92 LEU A 105 1 14 HELIX 6 6 ALA A 118 GLU A 132 1 15 HELIX 7 7 LYS A 143 GLN A 147 5 5 HELIX 8 8 PRO A 165 GLU A 170 1 6 HELIX 9 9 PRO A 176 LEU A 185 5 10 HELIX 10 10 LEU A 208 GLY A 212 5 5 HELIX 11 11 GLU A 230 LEU A 233 1 4 HELIX 12 12 SER A 242 ALA A 246 5 5 HELIX 13 13 ARG A 266 ARG A 275 1 10 HELIX 14 14 GLY A 279 LEU A 281 5 3 HELIX 15 15 PRO A 338 ASP A 344 1 7 HELIX 16 16 ALA A 353 ARG A 362 1 10 HELIX 17 17 PRO A 373 LEU A 380 1 8 HELIX 18 18 PRO A 387 ARG A 393 1 7 HELIX 19 19 ALA A 402 LEU A 420 1 19 HELIX 20 20 GLU A 424 GLU A 432 1 9 HELIX 21 21 GLU A 434 THR A 447 1 14 HELIX 22 22 VAL A 453 VAL A 463 1 11 HELIX 23 23 GLU A 471 ARG A 476 1 6 HELIX 24 24 ARG A 487 ASP A 496 1 10 HELIX 25 25 LYS A 511 ALA A 516 1 6 HELIX 26 26 ILE A 528 TYR A 545 1 18 HELIX 27 27 LEU A 581 ASN A 583 5 3 HELIX 28 28 PRO A 589 ALA A 597 1 9 HELIX 29 29 ILE A 614 SER A 623 1 10 HELIX 30 30 GLU A 626 GLU A 634 1 9 HELIX 31 31 ILE A 638 PHE A 647 1 10 HELIX 32 32 ARG A 651 ALA A 653 5 3 HELIX 33 33 PRO A 656 GLY A 668 1 13 HELIX 34 34 ALA A 675 GLU A 681 1 7 HELIX 35 35 TYR A 686 SER A 699 1 14 HELIX 36 36 PRO A 701 ARG A 716 1 16 HELIX 37 37 PRO A 731 GLU A 734 5 4 HELIX 38 38 LYS A 738 GLU A 774 1 37 HELIX 39 39 ALA A 796 GLU A 808 1 13 HELIX 40 40 TRP A 827 ALA A 830 1 4 SHEET 1 A 4 TYR A 134 VAL A 136 0 SHEET 2 A 4 GLY A 12 ASP A 18 1 N GLY A 12 O GLU A 135 SHEET 3 A 4 ALA A 61 VAL A 65 1 N ALA A 61 O LEU A 15 SHEET 4 A 4 ALA A 109 LEU A 111 1 N ALA A 109 O VAL A 64 SHEET 1 B 2 ARG A 137 LEU A 139 0 SHEET 2 B 2 HIS A 154 LEU A 156 1 N HIS A 154 O ILE A 138 SHEET 1 C 2 GLU A 295 ALA A 297 0 SHEET 2 C 2 ARG A 331 HIS A 333 1 N VAL A 332 O GLU A 295 SHEET 1 D 2 ARG A 563 ASN A 565 0 SHEET 2 D 2 SER A 575 SER A 577 -1 N SER A 577 O ARG A 563 SHEET 1 E 3 TRP A 604 ASP A 610 0 SHEET 2 E 3 GLU A 786 PRO A 792 -1 N ALA A 791 O LEU A 605 SHEET 3 E 3 ARG A 778 VAL A 783 -1 N VAL A 783 O GLU A 786 SHEET 1 F 2 GLY A 308 LEU A 311 0 SHEET 2 F 2 LEU A 321 ALA A 325 -1 N ALA A 325 O GLY A 308 CISPEP 1 ASP A 578 PRO A 579 0 0.46 CRYST1 193.600 193.600 193.600 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005165 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005165 0.00000