HEADER HYDROLASE (CARBOXYPEPTIDASE) 24-MAR-95 1CPY TITLE SITE-DIRECTED MUTAGENESIS ON (SERINE) CARBOXYPEPTIDASE Y FROM YEAST. TITLE 2 THE SIGNIFICANCE OF THR 60 AND MET 398 IN HYDROLYSIS AND AMINOLYSIS TITLE 3 REACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE CARBOXYPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.16.5; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS HYDROLASE (CARBOXYPEPTIDASE) EXPDTA X-RAY DIFFRACTION AUTHOR S.B.SORENSEN,M.RAASCHOU-NIELSEN,U.MORTENSEN,S.J.REMINGTON,K.BREDDAM REVDAT 5 29-JUL-20 1CPY 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 SITE REVDAT 4 29-NOV-17 1CPY 1 HELIX REVDAT 3 13-JUL-11 1CPY 1 VERSN REVDAT 2 24-FEB-09 1CPY 1 VERSN REVDAT 1 15-SEP-95 1CPY 0 JRNL AUTH S.B.SORENSEN,M.RAASCHOU-NIELSEN,U.H.MORTENSEN,S.J.REMINGTON, JRNL AUTH 2 K.BREDDAM JRNL TITL SITE-DIRECTED MUTAGENESIS ON (SERINE) CARBOXYPEPTIDASE Y JRNL TITL 2 FROM YEAST. THE SIGNIFICANCE OF THR 60 AND MET 398 IN JRNL TITL 3 HYDROLYSIS AND AMINOLYSIS REACTIONS JRNL REF J.AM.CHEM.SOC. V. 117 5944 1995 JRNL REFN ISSN 0002-7863 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.ENDRIZZI,K.BREDDAM,S.J.REMINGTON REMARK 1 TITL 2.8 ANGSTROMS STRUCTURE OF YEAST SERINE CARBOXYPEPTIDASE REMARK 1 REF BIOCHEMISTRY V. 33 11106 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.023 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 3.300 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 56.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 56.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 56.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 56.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 56.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 56.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ILE A 7 CG1 CG2 CD1 REMARK 470 ASN A 13 CG OD1 ND2 REMARK 470 VAL A 14 CG1 CG2 REMARK 470 THR A 15 OG1 CG2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 TYR A 17 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 PHE A 35 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 SER A 69 OG REMARK 470 SER A 86 OG REMARK 470 VAL A 90 CG1 CG2 REMARK 470 SER A 204 OG REMARK 470 SER A 213 OG REMARK 470 SER A 232 OG REMARK 470 ILE A 275 CD1 REMARK 470 GLN A 281 CG CD OE1 NE2 REMARK 470 VAL A 284 CG1 CG2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 ILE A 302 CD1 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 GLN A 364 CG CD OE1 NE2 REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 SER A 372 OG REMARK 470 ILE A 415 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 158 CD GLU A 158 OE2 0.071 REMARK 500 GLU A 189 CD GLU A 189 OE2 0.073 REMARK 500 GLU A 195 CD GLU A 195 OE2 0.067 REMARK 500 GLU A 198 CD GLU A 198 OE2 0.077 REMARK 500 GLU A 205 CD GLU A 205 OE1 0.114 REMARK 500 GLU A 206 CD GLU A 206 OE2 0.068 REMARK 500 GLU A 211 CD GLU A 211 OE1 0.074 REMARK 500 GLU A 215 CD GLU A 215 OE1 0.076 REMARK 500 GLU A 222 CD GLU A 222 OE1 0.120 REMARK 500 GLU A 263 CD GLU A 263 OE2 0.100 REMARK 500 GLU A 286 CD GLU A 286 OE1 0.074 REMARK 500 GLU A 360 CD GLU A 360 OE1 0.069 REMARK 500 GLU A 376 CD GLU A 376 OE2 0.076 REMARK 500 GLU A 405 CD GLU A 405 OE2 0.099 REMARK 500 GLU A 413 CD GLU A 413 OE1 0.077 REMARK 500 LEU A 421 C LEU A 421 OXT 1.506 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 21 CB - CG - CD1 ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 25 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 27 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 40 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 40 CB - CG - OD2 ANGL. DEV. = -9.7 DEGREES REMARK 500 PRO A 73 C - N - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASN A 87 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 ASP A 94 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 151 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 180 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 THR A 237 CA - CB - CG2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ALA A 243 CB - CA - C ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO A 247 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 250 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 259 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 261 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 274 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 276 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASN A 280 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 293 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 301 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 304 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 304 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 311 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 311 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 312 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP A 322 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 322 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 327 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 327 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 333 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 338 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASN A 342 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 LYS A 347 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 PRO A 354 C - N - CD ANGL. DEV. = -37.5 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASN A 368 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 375 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 VAL A 381 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG A 391 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL A 411 CA - CB - CG2 ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -162.17 -112.82 REMARK 500 LYS A 6 -67.22 -21.35 REMARK 500 ILE A 10 -157.24 18.37 REMARK 500 PRO A 12 -115.28 -70.84 REMARK 500 ASN A 13 -19.01 -16.95 REMARK 500 VAL A 14 -101.30 -61.72 REMARK 500 THR A 15 87.47 135.05 REMARK 500 GLU A 24 -80.17 -10.81 REMARK 500 ASN A 39 -98.28 -93.88 REMARK 500 LYS A 43 -60.28 -93.25 REMARK 500 ASP A 44 125.52 -31.13 REMARK 500 PRO A 45 -179.49 -63.02 REMARK 500 PHE A 63 46.44 -95.69 REMARK 500 PHE A 64 -24.47 -166.70 REMARK 500 ALA A 65 -37.13 -138.33 REMARK 500 LEU A 66 18.53 -146.30 REMARK 500 PRO A 73 -32.42 -27.69 REMARK 500 PRO A 77 163.58 -41.74 REMARK 500 TYR A 82 24.09 -162.88 REMARK 500 ASN A 87 42.65 -147.56 REMARK 500 ALA A 88 143.17 172.70 REMARK 500 ASP A 94 74.10 -110.54 REMARK 500 PRO A 96 -156.65 -89.59 REMARK 500 ASN A 98 10.00 100.62 REMARK 500 TYR A 103 172.80 178.47 REMARK 500 SER A 107 -143.76 -150.52 REMARK 500 LEU A 125 -86.52 -54.36 REMARK 500 PHE A 126 -48.33 -23.72 REMARK 500 PRO A 131 8.62 -60.03 REMARK 500 VAL A 134 -95.86 -98.84 REMARK 500 ASN A 135 -62.43 6.26 REMARK 500 LYS A 136 -12.61 -47.93 REMARK 500 SER A 146 -113.20 59.86 REMARK 500 LEU A 160 11.16 -65.73 REMARK 500 ARG A 165 133.77 -36.86 REMARK 500 ASN A 176 51.86 34.95 REMARK 500 SER A 200 124.19 -38.52 REMARK 500 THR A 237 -70.42 -58.57 REMARK 500 ASP A 257 100.75 -175.70 REMARK 500 ASN A 266 172.05 -44.94 REMARK 500 PHE A 300 -49.87 -26.65 REMARK 500 ASP A 311 -77.88 -26.13 REMARK 500 TRP A 312 -28.39 -39.76 REMARK 500 GLN A 326 40.98 -105.65 REMARK 500 ASP A 336 9.11 -69.19 REMARK 500 ASN A 342 142.54 -22.72 REMARK 500 ASP A 351 -9.13 -57.67 REMARK 500 TRP A 355 166.60 175.55 REMARK 500 ASP A 358 -87.10 -16.66 REMARK 500 GLU A 360 -72.98 -54.64 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 333 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 871 REMARK 610 NAG A 1681 REMARK 610 NAG A 3681 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. STRANDS 1, 2, 3, 5, 6, 7, 8, 9, 10 REMARK 700 AND 11 OF S1A AND S1B ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: CBS REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S1P REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S1S REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL DBREF 1CPY A 1 421 UNP P00729 CBPY_YEAST 112 532 SEQADV 1CPY ALA A 65 UNP P00729 GLU 176 CONFLICT SEQADV 1CPY ALA A 145 UNP P00729 GLU 256 CONFLICT SEQRES 1 A 421 LYS ILE LYS ASP PRO LYS ILE LEU GLY ILE ASP PRO ASN SEQRES 2 A 421 VAL THR GLN TYR THR GLY TYR LEU ASP VAL GLU ASP GLU SEQRES 3 A 421 ASP LYS HIS PHE PHE PHE TRP THR PHE GLU SER ARG ASN SEQRES 4 A 421 ASP PRO ALA LYS ASP PRO VAL ILE LEU TRP LEU ASN GLY SEQRES 5 A 421 GLY PRO GLY CYS SER SER LEU THR GLY LEU PHE PHE ALA SEQRES 6 A 421 LEU GLY PRO SER SER ILE GLY PRO ASP LEU LYS PRO ILE SEQRES 7 A 421 GLY ASN PRO TYR SER TRP ASN SER ASN ALA THR VAL ILE SEQRES 8 A 421 PHE LEU ASP GLN PRO VAL ASN VAL GLY PHE SER TYR SER SEQRES 9 A 421 GLY SER SER GLY VAL SER ASN THR VAL ALA ALA GLY LYS SEQRES 10 A 421 ASP VAL TYR ASN PHE LEU GLU LEU PHE PHE ASP GLN PHE SEQRES 11 A 421 PRO GLU TYR VAL ASN LYS GLY GLN ASP PHE HIS ILE ALA SEQRES 12 A 421 GLY ALA SER TYR ALA GLY HIS TYR ILE PRO VAL PHE ALA SEQRES 13 A 421 SER GLU ILE LEU SER HIS LYS ASP ARG ASN PHE ASN LEU SEQRES 14 A 421 THR SER VAL LEU ILE GLY ASN GLY LEU THR ASP PRO LEU SEQRES 15 A 421 THR GLN TYR ASN TYR TYR GLU PRO MET ALA CYS GLY GLU SEQRES 16 A 421 GLY GLY GLU PRO SER VAL LEU PRO SER GLU GLU CYS SER SEQRES 17 A 421 ALA MET GLU ASP SER LEU GLU ARG CYS LEU GLY LEU ILE SEQRES 18 A 421 GLU SER CYS TYR ASP SER GLN SER VAL TRP SER CYS VAL SEQRES 19 A 421 PRO ALA THR ILE TYR CYS ASN ASN ALA GLN LEU ALA PRO SEQRES 20 A 421 TYR GLN ARG THR GLY ARG ASN VAL TYR ASP ILE ARG LYS SEQRES 21 A 421 ASP CYS GLU GLY GLY ASN LEU CYS TYR PRO THR LEU GLN SEQRES 22 A 421 ASP ILE ASP ASP TYR LEU ASN GLN ASP TYR VAL LYS GLU SEQRES 23 A 421 ALA VAL GLY ALA GLU VAL ASP HIS TYR GLU SER CYS ASN SEQRES 24 A 421 PHE ASP ILE ASN ARG ASN PHE LEU PHE ALA GLY ASP TRP SEQRES 25 A 421 MET LYS PRO TYR HIS THR ALA VAL THR ASP LEU LEU ASN SEQRES 26 A 421 GLN ASP LEU PRO ILE LEU VAL TYR ALA GLY ASP LYS ASP SEQRES 27 A 421 PHE ILE CYS ASN TRP LEU GLY ASN LYS ALA TRP THR ASP SEQRES 28 A 421 VAL LEU PRO TRP LYS TYR ASP GLU GLU PHE ALA SER GLN SEQRES 29 A 421 LYS VAL ARG ASN TRP THR ALA SER ILE THR ASP GLU VAL SEQRES 30 A 421 ALA GLY GLU VAL LYS SER TYR LYS HIS PHE THR TYR LEU SEQRES 31 A 421 ARG VAL PHE ASN GLY GLY HIS MET VAL PRO PHE ASP VAL SEQRES 32 A 421 PRO GLU ASN ALA LEU SER MET VAL ASN GLU TRP ILE HIS SEQRES 33 A 421 GLY GLY PHE SER LEU HET NAG A 871 14 HET NAG A1681 14 HET NAG A3681 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 HOH *38(H2 O) HELIX 1 A LEU A 59 LEU A 62 1 4 HELIX 2 B TRP A 84 ASN A 87 5 4 HELIX 3 C VAL A 113 GLN A 129 1 17 HELIX 4 D PRO A 131 TYR A 133 5 3 HELIX 5 E ALA A 148 LEU A 160 1 13 HELIX 6 F PRO A 181 ALA A 192 1 12 HELIX 7 G SER A 204 SER A 227 1 24 HELIX 8 H VAL A 230 THR A 251 1 22 HELIX 9 I THR A 271 ASN A 280 1 10 HELIX 10 J ASP A 282 ALA A 287 1 6 HELIX 11 K PHE A 300 LEU A 307 1 8 HELIX 12 L ASP A 311 MET A 313 5 3 HELIX 13 M HIS A 317 ASN A 325 1 9 HELIX 14 N TRP A 343 THR A 350 1 8 HELIX 15 O GLU A 359 SER A 363 1 5 HELIX 16 P VAL A 399 ASP A 402 1 4 HELIX 17 Q PRO A 404 ILE A 415 1 12 SHEET 1 S1A11 LYS A 1 LYS A 3 0 SHEET 2 S1A11 TYR A 17 VAL A 23 -1 SHEET 3 S1A11 LYS A 28 PHE A 35 1 SHEET 4 S1A11 THR A 89 ILE A 91 -1 SHEET 5 S1A11 VAL A 46 LEU A 50 -1 SHEET 6 S1A11 PHE A 140 ALA A 145 -1 SHEET 7 S1A11 LEU A 169 GLY A 175 -1 SHEET 8 S1A11 ILE A 330 GLY A 335 -1 SHEET 9 S1A11 PHE A 387 VAL A 392 -1 SHEET 10 S1A11 VAL A 377 TYR A 384 1 SHEET 11 S1A11 ARG A 367 THR A 370 -1 SHEET 1 S1B11 LYS A 1 LYS A 3 0 SHEET 2 S1B11 TYR A 17 VAL A 23 -1 SHEET 3 S1B11 LYS A 28 PHE A 35 1 SHEET 4 S1B11 TYR A 103 SER A 104 -1 SHEET 5 S1B11 VAL A 46 LEU A 50 -1 SHEET 6 S1B11 PHE A 140 ALA A 145 -1 SHEET 7 S1B11 LEU A 169 GLY A 175 -1 SHEET 8 S1B11 ILE A 330 GLY A 335 -1 SHEET 9 S1B11 PHE A 387 VAL A 392 -1 SHEET 10 S1B11 VAL A 377 TYR A 384 1 SHEET 11 S1B11 ARG A 367 THR A 370 -1 SSBOND 1 CYS A 56 CYS A 298 1555 1555 2.15 SSBOND 2 CYS A 193 CYS A 207 1555 1555 2.04 SSBOND 3 CYS A 217 CYS A 240 1555 1555 2.11 SSBOND 4 CYS A 224 CYS A 233 1555 1555 2.06 SSBOND 5 CYS A 262 CYS A 268 1555 1555 2.19 CISPEP 1 GLY A 53 PRO A 54 0 9.30 CISPEP 2 GLN A 95 PRO A 96 0 2.03 SITE 1 CAT 4 SER A 146 ASP A 338 HIS A 397 ALA A 145 SITE 1 CBS 4 ASN A 51 GLY A 52 ALA A 145 HIS A 397 SITE 1 S1P 7 THR A 60 PHE A 64 ALA A 65 TYR A 256 SITE 2 S1P 7 TYR A 269 LEU A 272 MET A 398 SITE 1 S1S 6 TYR A 147 LEU A 178 LEU A 245 TRP A 312 SITE 2 S1S 6 ILE A 340 CYS A 341 CRYST1 112.000 112.000 112.000 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008929 0.00000