HEADER CONTRACTILE PROTEIN 26-JUL-96 1CQA TITLE BIRCH POLLEN PROFILIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROFILIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETULA PENDULA; SOURCE 3 ORGANISM_COMMON: EUROPEAN WHITE BIRCH; SOURCE 4 ORGANISM_TAXID: 3505; SOURCE 5 CELL: POLLEN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACTIN-BINDING PROTEIN, ALLERGEN, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,T.BALL,N.M.MAHONEY,R.VALENTA,S.C.ALMO REVDAT 5 07-FEB-24 1CQA 1 SEQADV REVDAT 4 24-FEB-09 1CQA 1 VERSN REVDAT 3 15-FEB-01 1CQA 1 HEADER REVDAT 2 29-FEB-00 1CQA 1 TITLE REVDAT 1 12-FEB-97 1CQA 0 JRNL AUTH A.A.FEDOROV,T.BALL,N.M.MAHONEY,R.VALENTA,S.C.ALMO JRNL TITL THE MOLECULAR BASIS FOR ALLERGEN CROSS-REACTIVITY: CRYSTAL JRNL TITL 2 STRUCTURE AND IGE-EPITOPE MAPPING OF BIRCH POLLEN PROFILIN. JRNL REF STRUCTURE V. 5 33 1997 JRNL REFN ISSN 0969-2126 JRNL PMID 9016715 JRNL DOI 10.1016/S0969-2126(97)00164-0 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROFFT REMARK 3 AUTHORS : KONNERT,HENDRICKSON,FINZEL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 3 NUMBER OF REFLECTIONS : 5356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 929 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.008 ; 0.018 REMARK 3 ANGLE DISTANCE (A) : 0.025 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.029 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.008 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.126 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.194 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.196 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.160 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 1.200 ; 2.000 REMARK 3 STAGGERED (DEGREES) : 18.200; 10.000 REMARK 3 TRANSVERSE (DEGREES) : 30.100; 10.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.886 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.568 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.756 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.919 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE WAS SOLVED BY COMBINATION OF THE SINGLE REMARK 3 ISOMORPHOUS REPLACEMENT AND MOLECULAR REPLACEMENT METHODS. REMARK 4 REMARK 4 1CQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 1994 REMARK 200 TEMPERATURE (KELVIN) : 290 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SINGLE ISOMORPHOUS REMARK 200 REPLACEMENT AND MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES, X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.68500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.95000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.34250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.95000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.02750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.95000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.34250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.95000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.02750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.68500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 CYS A 13 REMARK 465 ASP A 14 REMARK 465 ILE A 15 REMARK 465 ASP A 16 REMARK 465 GLY A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 21 DBREF 1CQA A 1 133 UNP P25816 PROF_BETVE 1 133 SEQADV 1CQA GLY A 19 UNP P25816 ALA 19 CONFLICT SEQADV 1CQA GLU A 20 UNP P25816 SER 20 CONFLICT SEQADV 1CQA GLU A 21 UNP P25816 ASN 21 CONFLICT SEQADV 1CQA LEU A 22 UNP P25816 SER 22 CONFLICT SEQADV 1CQA ALA A 23 UNP P25816 LEU 23 CONFLICT SEQRES 1 A 133 MET SER TRP GLN THR TYR VAL ASP GLU HIS LEU MET CYS SEQRES 2 A 133 ASP ILE ASP GLY GLN GLY GLU GLU LEU ALA ALA SER ALA SEQRES 3 A 133 ILE VAL GLY HIS ASP GLY SER VAL TRP ALA GLN SER SER SEQRES 4 A 133 SER PHE PRO GLN PHE LYS PRO GLN GLU ILE THR GLY ILE SEQRES 5 A 133 MET LYS ASP PHE GLU GLU PRO GLY HIS LEU ALA PRO THR SEQRES 6 A 133 GLY LEU HIS LEU GLY GLY ILE LYS TYR MET VAL ILE GLN SEQRES 7 A 133 GLY GLU ALA GLY ALA VAL ILE ARG GLY LYS LYS GLY SER SEQRES 8 A 133 GLY GLY ILE THR ILE LYS LYS THR GLY GLN ALA LEU VAL SEQRES 9 A 133 PHE GLY ILE TYR GLU GLU PRO VAL THR PRO GLY GLN CYS SEQRES 10 A 133 ASN MET VAL VAL GLU ARG LEU GLY ASP TYR LEU ILE ASP SEQRES 11 A 133 GLN GLY LEU FORMUL 2 HOH *48(H2 O) HELIX 1 H1 SER A 2 MET A 12 1 11 HELIX 2 H2 PRO A 46 GLU A 57 1 12 HELIX 3 H3 PRO A 114 ASP A 130 1 17 SHEET 1 S1 7 LEU A 67 LEU A 69 0 SHEET 2 S1 7 ILE A 72 GLU A 80 -1 N ILE A 72 O LEU A 69 SHEET 3 S1 7 VAL A 84 LYS A 89 -1 N VAL A 84 O GLU A 80 SHEET 4 S1 7 GLY A 92 THR A 99 -1 N GLY A 92 O LYS A 89 SHEET 5 S1 7 ALA A 102 TYR A 108 -1 O ALA A 102 N THR A 99 SHEET 6 S1 7 ALA A 24 GLY A 29 -1 N ALA A 24 O ILE A 107 SHEET 7 S1 7 SER A 33 SER A 38 -1 O SER A 33 N GLY A 29 CISPEP 1 GLU A 110 PRO A 111 0 0.70 CRYST1 59.900 59.900 85.370 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011714 0.00000