HEADER VIRAL PROTEIN 27-AUG-99 1CWX TITLE SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN TITLE 2 2-45 [C-HCV(2-45)] COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPATITIS C VIRUS CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THIS SEQUENCE SOURCE 4 OCCURS NATURALLY IN HEPATITIS C VIRUS (GENOTYPE 1A ISOLATE H77).. KEYWDS HELIX-LOOP-HELIX, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 4 AUTHOR L.LADAVIERE,G.DELEAGE,R.MONTSERRET,P.DALBON,M.JOLIVET,F.PENIN REVDAT 3 16-FEB-22 1CWX 1 REMARK REVDAT 2 24-FEB-09 1CWX 1 VERSN REVDAT 1 30-AUG-99 1CWX 0 JRNL AUTH L.LADAVIERE,G.DELEAGE,R.MONTSERRET,P.DALBON,M.JOLIVET, JRNL AUTH 2 F.PENIN JRNL TITL STRUCTURAL ANALYSIS OF THE IMMUNODOMINANT ANTIGENIC REGION JRNL TITL 2 OF THE HEPATITIS C VIRUS CAPSID PROTEIN BY NMR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 5.1, X-PLOR 3.1 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CWX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009594. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.9 REMARK 210 IONIC STRENGTH : 0.1M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 40% D2-TRIFLUOROETHANOL;0.01M REMARK 210 SODIUM PHOSPHATE;0.1M NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; 2D ROESY; 2D REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.1, X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING MOLECULAR DYNAMICS REMARK 210 MATRIX RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 4 REMARK 210 CONFORMERS, SELECTION CRITERIA : MOST CONVERGENT STRUCTURES AT REMARK 210 THE LEVEL OF BOTH HELICES. NOTE REMARK 210 THAT 23 STRUCTURES OVER 50 HAD REMARK 210 NO RESTRAINT VIOLATION > 0.5 REMARK 210 ANGSTROM. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 89.37 -179.90 REMARK 500 1 LYS A 5 -51.52 164.29 REMARK 500 1 LYS A 9 -49.94 179.45 REMARK 500 1 THR A 10 -80.39 -85.71 REMARK 500 1 ARG A 12 -174.80 63.23 REMARK 500 1 ASN A 13 169.28 -45.02 REMARK 500 1 THR A 14 -38.29 -173.66 REMARK 500 1 ARG A 17 -45.57 120.76 REMARK 500 1 GLN A 19 41.26 -86.71 REMARK 500 1 ASP A 20 -43.16 -155.39 REMARK 500 1 GLN A 28 -10.28 -48.14 REMARK 500 1 ILE A 29 -6.72 80.37 REMARK 500 1 ARG A 39 94.09 -52.77 REMARK 500 2 THR A 2 -89.01 59.98 REMARK 500 2 ASN A 3 84.54 -164.66 REMARK 500 2 LYS A 9 149.65 -173.71 REMARK 500 2 LYS A 11 -53.35 -173.05 REMARK 500 2 ARG A 12 129.09 61.86 REMARK 500 2 THR A 14 -43.55 -170.67 REMARK 500 2 ASN A 15 116.25 -164.65 REMARK 500 2 ARG A 17 -57.26 161.42 REMARK 500 2 GLN A 19 43.99 -91.27 REMARK 500 2 ASP A 20 -39.98 -151.52 REMARK 500 2 PRO A 24 -72.97 -77.21 REMARK 500 2 ILE A 29 -12.09 83.26 REMARK 500 2 ARG A 38 39.25 -87.58 REMARK 500 3 ASN A 3 96.18 -176.65 REMARK 500 3 LYS A 9 -90.03 -150.93 REMARK 500 3 THR A 10 -73.36 79.96 REMARK 500 3 LYS A 11 127.95 62.59 REMARK 500 3 ARG A 12 -179.69 50.47 REMARK 500 3 ASN A 13 -66.37 -149.98 REMARK 500 3 ARG A 17 -57.96 147.93 REMARK 500 3 GLN A 19 40.60 -89.49 REMARK 500 3 ASP A 20 -43.06 -153.89 REMARK 500 3 ARG A 39 96.19 -50.06 REMARK 500 4 THR A 2 -74.63 -157.98 REMARK 500 4 LYS A 5 79.68 61.44 REMARK 500 4 GLN A 7 -90.04 -75.83 REMARK 500 4 ARG A 8 99.75 -174.09 REMARK 500 4 LYS A 9 -88.10 -163.13 REMARK 500 4 THR A 10 172.92 174.71 REMARK 500 4 LYS A 11 177.77 -58.20 REMARK 500 4 ASN A 15 92.84 -47.39 REMARK 500 4 ARG A 17 -47.50 124.49 REMARK 500 4 GLN A 19 44.80 -89.37 REMARK 500 4 ASP A 20 -41.81 -157.26 REMARK 500 4 GLN A 28 -33.67 -135.95 REMARK 500 4 ILE A 29 -12.95 85.34 REMARK 500 4 PRO A 37 -100.62 -77.22 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.32 SIDE CHAIN REMARK 500 1 ARG A 12 0.31 SIDE CHAIN REMARK 500 1 ARG A 16 0.29 SIDE CHAIN REMARK 500 1 ARG A 17 0.24 SIDE CHAIN REMARK 500 1 ARG A 38 0.30 SIDE CHAIN REMARK 500 1 ARG A 39 0.24 SIDE CHAIN REMARK 500 1 ARG A 42 0.28 SIDE CHAIN REMARK 500 2 ARG A 8 0.31 SIDE CHAIN REMARK 500 2 ARG A 12 0.27 SIDE CHAIN REMARK 500 2 ARG A 16 0.08 SIDE CHAIN REMARK 500 2 ARG A 17 0.26 SIDE CHAIN REMARK 500 2 ARG A 38 0.30 SIDE CHAIN REMARK 500 2 ARG A 39 0.20 SIDE CHAIN REMARK 500 2 ARG A 42 0.30 SIDE CHAIN REMARK 500 3 ARG A 8 0.25 SIDE CHAIN REMARK 500 3 ARG A 12 0.23 SIDE CHAIN REMARK 500 3 ARG A 16 0.31 SIDE CHAIN REMARK 500 3 ARG A 17 0.19 SIDE CHAIN REMARK 500 3 ARG A 38 0.27 SIDE CHAIN REMARK 500 3 ARG A 39 0.20 SIDE CHAIN REMARK 500 3 ARG A 42 0.32 SIDE CHAIN REMARK 500 4 ARG A 8 0.32 SIDE CHAIN REMARK 500 4 ARG A 12 0.31 SIDE CHAIN REMARK 500 4 ARG A 17 0.23 SIDE CHAIN REMARK 500 4 ARG A 38 0.32 SIDE CHAIN REMARK 500 4 ARG A 39 0.29 SIDE CHAIN REMARK 500 4 ARG A 42 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1CWX A 1 44 UNP P27958 POLG_HCVH 2 45 SEQRES 1 A 44 SER THR ASN PRO LYS PRO GLN ARG LYS THR LYS ARG ASN SEQRES 2 A 44 THR ASN ARG ARG PRO GLN ASP VAL LYS PHE PRO GLY GLY SEQRES 3 A 44 GLY GLN ILE VAL GLY GLY VAL TYR LEU LEU PRO ARG ARG SEQRES 4 A 44 GLY PRO ARG LEU GLY CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1