data_1CYZ # _entry.id 1CYZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CYZ pdb_00001cyz 10.2210/pdb1cyz/pdb RCSB RCSB009629 ? ? WWPDB D_1000009629 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-09-14 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_struct_assembly 7 4 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' struct_site 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_nmr_software.name' 7 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CYZ _pdbx_database_status.recvd_initial_deposition_date 1999-08-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1B0S _pdbx_database_related.details '1B0S CONTAINS THE NMR STRUCTURE OF GAACCGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, X.-L.' 1 'Hubbard IV, R.B.' 2 'Lee, M.' 3 'Tao, Z.-F.' 4 'Sugiyama, H.' 5 'Wang, A.H.-J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Imidazole-imidazole pair as a minor groove recognition motif for T:G mismatched base pairs' 'Nucleic Acids Res.' 27 4183 4190 1999 NARHAD UK 0305-1048 0389 ? 10518609 10.1093/nar/27.21.4183 1 'Binding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy' Eur.J.Biochem. 263 646 655 1999 EJBCAI IX 0014-2956 0262 ? ? 10.1046/j.1432-1327.1999.00515.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, X.-L.' 1 ? primary 'Hubbard IV, R.B.' 2 ? primary 'Lee, M.' 3 ? primary 'Tao, Z.-F.' 4 ? primary 'Sugiyama, H.' 5 ? primary 'Wang, A.H.-J.' 6 ? 1 'Yang, X.-L.' 7 ? 1 'Kaenzig, C.' 8 ? 1 'Lee, M.' 9 ? 1 'Wang, A.H.-J.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*AP*AP*CP*TP*GP*GP*TP*TP*C)-3'" 3060.016 2 ? ? ? ? 2 non-polymer syn ;(2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM ; 486.508 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DA)(DA)(DC)(DT)(DG)(DG)(DT)(DT)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GAACTGGTTC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;(2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM ; _pdbx_entity_nonpoly.comp_id AR1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DA n 1 4 DC n 1 5 DT n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AR1 non-polymer . ;(2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM ; 'TRI-IMIDAZOLE DNA MINOR GROOVE BINDER; AR-1-144' 'C20 H28 N11 O4 1' 486.508 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 16 16 DG G B . n B 1 2 DA 2 17 17 DA A B . n B 1 3 DA 3 18 18 DA A B . n B 1 4 DC 4 19 19 DC C B . n B 1 5 DT 5 20 20 DT T B . n B 1 6 DG 6 21 21 DG G B . n B 1 7 DG 7 22 22 DG G B . n B 1 8 DT 8 23 23 DT T B . n B 1 9 DT 9 24 24 DT T B . n B 1 10 DC 10 25 25 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AR1 1 12 12 AR1 AR1 A . D 2 AR1 1 26 26 AR1 AR1 B . # _cell.entry_id 1CYZ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYZ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1CYZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1CYZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1CYZ _struct.title 'NMR STRUCTURE OF THE GAACTGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CYZ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'T:G RECOGNIZED BY IM/IM PAIR IN THE DNA MINOR GROOVE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1CYZ _struct_ref.pdbx_db_accession 1CYZ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CYZ A 1 ? 10 ? 1CYZ 1 ? 10 ? 1 10 2 1 1CYZ B 1 ? 10 ? 1CYZ 16 ? 25 ? 16 25 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 2 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 2 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DG 6 O6 ? ? A DT 5 B DG 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A DT 5 O2 ? ? ? 1_555 B DG 6 N1 ? ? A DT 5 B DG 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DT 5 O2 ? ? A DG 6 B DT 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DT 5 N3 ? ? A DG 6 B DT 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AR1 12 ? 10 'BINDING SITE FOR RESIDUE AR1 A 12' AC2 Software B AR1 26 ? 10 'BINDING SITE FOR RESIDUE AR1 B 26' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DC A 4 ? DC A 4 . ? 1_555 ? 2 AC1 10 DT A 5 ? DT A 5 . ? 1_555 ? 3 AC1 10 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC1 10 DG A 7 ? DG A 7 . ? 1_555 ? 5 AC1 10 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 10 DT A 9 ? DT A 9 . ? 1_555 ? 7 AC1 10 DC B 4 ? DC B 19 . ? 1_555 ? 8 AC1 10 DG B 6 ? DG B 21 . ? 1_555 ? 9 AC1 10 DG B 7 ? DG B 22 . ? 1_555 ? 10 AC1 10 AR1 D . ? AR1 B 26 . ? 1_555 ? 11 AC2 10 DC A 4 ? DC A 4 . ? 1_555 ? 12 AC2 10 DG A 6 ? DG A 6 . ? 1_555 ? 13 AC2 10 DG A 7 ? DG A 7 . ? 1_555 ? 14 AC2 10 AR1 C . ? AR1 A 12 . ? 1_555 ? 15 AC2 10 DC B 4 ? DC B 19 . ? 1_555 ? 16 AC2 10 DT B 5 ? DT B 20 . ? 1_555 ? 17 AC2 10 DG B 6 ? DG B 21 . ? 1_555 ? 18 AC2 10 DG B 7 ? DG B 22 . ? 1_555 ? 19 AC2 10 DT B 8 ? DT B 23 . ? 1_555 ? 20 AC2 10 DT B 9 ? DT B 24 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? 1.555 1.512 0.043 0.007 N 2 1 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.540 1.496 0.044 0.006 N 3 1 "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.556 1.512 0.044 0.007 N 4 1 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.540 1.496 0.044 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.95 108.30 6.65 0.30 N 2 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.46 108.30 3.16 0.30 N 3 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.91 105.90 -4.99 0.80 N 4 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.45 108.30 4.15 0.30 N 5 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 110.61 106.00 4.61 0.60 N 6 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 100.60 105.90 -5.30 0.80 N 7 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 117.47 108.30 9.17 0.30 N 8 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.54 122.90 -4.36 0.60 N 9 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 114.96 108.30 6.66 0.30 N 10 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.48 108.30 3.18 0.30 N 11 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.88 105.90 -5.02 0.80 N 12 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 112.43 108.30 4.13 0.30 N 13 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 110.65 106.00 4.65 0.60 N 14 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 100.56 105.90 -5.34 0.80 N 15 1 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 117.48 108.30 9.18 0.30 N 16 1 C6 B DT 24 ? ? C5 B DT 24 ? ? C7 B DT 24 ? ? 118.53 122.90 -4.37 0.60 N # _pdbx_nmr_ensemble.entry_id 1CYZ _pdbx_nmr_ensemble.conformers_calculated_total_number 11 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'REFINED AVERAGE STRUCTURE' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1CYZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'refined average structure' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.5 MM DNA DUPLEX; 20 MM PHOSPHATE BUFFER; 100% D2O OR 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 275 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 'NO ADDITIONAL SALT' _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 TOCSY 1 # _pdbx_nmr_details.entry_id 1CYZ _pdbx_nmr_details.text 'THIS STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR TECHNIQUES WITH BACK NOE CALCULATION' # _pdbx_nmr_refine.entry_id 1CYZ _pdbx_nmr_refine.method 'NOE-RESTRAINED CONJUGATE GRADIENT REFINEMENT IN X-PLOR; FULL MATRIX RELAXATION' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'data analysis' Felix '1.1 AND 98' MSI 1 refinement X-PLOR 3.851 BRUNGER 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AR1 CA C N N 1 AR1 OA O N N 2 AR1 N1 N N N 3 AR1 C11 C Y N 4 AR1 N21 N Y N 5 AR1 C31 C Y N 6 AR1 N41 N Y N 7 AR1 CN1 C N N 8 AR1 C51 C Y N 9 AR1 C1 C N N 10 AR1 O1 O N N 11 AR1 N2 N N N 12 AR1 C12 C Y N 13 AR1 N22 N Y N 14 AR1 C32 C Y N 15 AR1 N42 N Y N 16 AR1 CN2 C N N 17 AR1 C52 C Y N 18 AR1 C2 C N N 19 AR1 O2 O N N 20 AR1 N3 N N N 21 AR1 C13 C Y N 22 AR1 N23 N Y N 23 AR1 C33 C Y N 24 AR1 N43 N Y N 25 AR1 CN3 C N N 26 AR1 C53 C Y N 27 AR1 C3 C N N 28 AR1 O3 O N N 29 AR1 NT N N N 30 AR1 C1T C N N 31 AR1 C2T C N N 32 AR1 N3T N N N 33 AR1 CNT C N N 34 AR1 CMT C N N 35 AR1 HA H N N 36 AR1 HN1 H N N 37 AR1 HN11 H N N 38 AR1 HN12 H N N 39 AR1 HN13 H N N 40 AR1 H51 H N N 41 AR1 HN2 H N N 42 AR1 HN21 H N N 43 AR1 HN22 H N N 44 AR1 HN23 H N N 45 AR1 H52 H N N 46 AR1 HN3 H N N 47 AR1 HN31 H N N 48 AR1 HN32 H N N 49 AR1 HN33 H N N 50 AR1 H53 H N N 51 AR1 HT H N N 52 AR1 H1T1 H N N 53 AR1 H1T2 H N N 54 AR1 H2T1 H N N 55 AR1 H2T2 H N N 56 AR1 HNT H N N 57 AR1 HNT1 H N N 58 AR1 HNT2 H N N 59 AR1 HNT3 H N N 60 AR1 HMT1 H N N 61 AR1 HMT2 H N N 62 AR1 HMT3 H N N 63 DA OP3 O N N 64 DA P P N N 65 DA OP1 O N N 66 DA OP2 O N N 67 DA "O5'" O N N 68 DA "C5'" C N N 69 DA "C4'" C N R 70 DA "O4'" O N N 71 DA "C3'" C N S 72 DA "O3'" O N N 73 DA "C2'" C N N 74 DA "C1'" C N R 75 DA N9 N Y N 76 DA C8 C Y N 77 DA N7 N Y N 78 DA C5 C Y N 79 DA C6 C Y N 80 DA N6 N N N 81 DA N1 N Y N 82 DA C2 C Y N 83 DA N3 N Y N 84 DA C4 C Y N 85 DA HOP3 H N N 86 DA HOP2 H N N 87 DA "H5'" H N N 88 DA "H5''" H N N 89 DA "H4'" H N N 90 DA "H3'" H N N 91 DA "HO3'" H N N 92 DA "H2'" H N N 93 DA "H2''" H N N 94 DA "H1'" H N N 95 DA H8 H N N 96 DA H61 H N N 97 DA H62 H N N 98 DA H2 H N N 99 DC OP3 O N N 100 DC P P N N 101 DC OP1 O N N 102 DC OP2 O N N 103 DC "O5'" O N N 104 DC "C5'" C N N 105 DC "C4'" C N R 106 DC "O4'" O N N 107 DC "C3'" C N S 108 DC "O3'" O N N 109 DC "C2'" C N N 110 DC "C1'" C N R 111 DC N1 N N N 112 DC C2 C N N 113 DC O2 O N N 114 DC N3 N N N 115 DC C4 C N N 116 DC N4 N N N 117 DC C5 C N N 118 DC C6 C N N 119 DC HOP3 H N N 120 DC HOP2 H N N 121 DC "H5'" H N N 122 DC "H5''" H N N 123 DC "H4'" H N N 124 DC "H3'" H N N 125 DC "HO3'" H N N 126 DC "H2'" H N N 127 DC "H2''" H N N 128 DC "H1'" H N N 129 DC H41 H N N 130 DC H42 H N N 131 DC H5 H N N 132 DC H6 H N N 133 DG OP3 O N N 134 DG P P N N 135 DG OP1 O N N 136 DG OP2 O N N 137 DG "O5'" O N N 138 DG "C5'" C N N 139 DG "C4'" C N R 140 DG "O4'" O N N 141 DG "C3'" C N S 142 DG "O3'" O N N 143 DG "C2'" C N N 144 DG "C1'" C N R 145 DG N9 N Y N 146 DG C8 C Y N 147 DG N7 N Y N 148 DG C5 C Y N 149 DG C6 C N N 150 DG O6 O N N 151 DG N1 N N N 152 DG C2 C N N 153 DG N2 N N N 154 DG N3 N N N 155 DG C4 C Y N 156 DG HOP3 H N N 157 DG HOP2 H N N 158 DG "H5'" H N N 159 DG "H5''" H N N 160 DG "H4'" H N N 161 DG "H3'" H N N 162 DG "HO3'" H N N 163 DG "H2'" H N N 164 DG "H2''" H N N 165 DG "H1'" H N N 166 DG H8 H N N 167 DG H1 H N N 168 DG H21 H N N 169 DG H22 H N N 170 DT OP3 O N N 171 DT P P N N 172 DT OP1 O N N 173 DT OP2 O N N 174 DT "O5'" O N N 175 DT "C5'" C N N 176 DT "C4'" C N R 177 DT "O4'" O N N 178 DT "C3'" C N S 179 DT "O3'" O N N 180 DT "C2'" C N N 181 DT "C1'" C N R 182 DT N1 N N N 183 DT C2 C N N 184 DT O2 O N N 185 DT N3 N N N 186 DT C4 C N N 187 DT O4 O N N 188 DT C5 C N N 189 DT C7 C N N 190 DT C6 C N N 191 DT HOP3 H N N 192 DT HOP2 H N N 193 DT "H5'" H N N 194 DT "H5''" H N N 195 DT "H4'" H N N 196 DT "H3'" H N N 197 DT "HO3'" H N N 198 DT "H2'" H N N 199 DT "H2''" H N N 200 DT "H1'" H N N 201 DT H3 H N N 202 DT H71 H N N 203 DT H72 H N N 204 DT H73 H N N 205 DT H6 H N N 206 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AR1 CA OA doub N N 1 AR1 CA N1 sing N N 2 AR1 CA HA sing N N 3 AR1 N1 C11 sing N N 4 AR1 N1 HN1 sing N N 5 AR1 C11 N21 sing Y N 6 AR1 C11 C51 doub Y N 7 AR1 N21 C31 doub Y N 8 AR1 C31 N41 sing Y N 9 AR1 C31 C1 sing N N 10 AR1 N41 CN1 sing N N 11 AR1 N41 C51 sing Y N 12 AR1 CN1 HN11 sing N N 13 AR1 CN1 HN12 sing N N 14 AR1 CN1 HN13 sing N N 15 AR1 C51 H51 sing N N 16 AR1 C1 O1 doub N N 17 AR1 C1 N2 sing N N 18 AR1 N2 C12 sing N N 19 AR1 N2 HN2 sing N N 20 AR1 C12 N22 sing Y N 21 AR1 C12 C52 doub Y N 22 AR1 N22 C32 doub Y N 23 AR1 C32 N42 sing Y N 24 AR1 C32 C2 sing N N 25 AR1 N42 CN2 sing N N 26 AR1 N42 C52 sing Y N 27 AR1 CN2 HN21 sing N N 28 AR1 CN2 HN22 sing N N 29 AR1 CN2 HN23 sing N N 30 AR1 C52 H52 sing N N 31 AR1 C2 O2 doub N N 32 AR1 C2 N3 sing N N 33 AR1 N3 C13 sing N N 34 AR1 N3 HN3 sing N N 35 AR1 C13 N23 sing Y N 36 AR1 C13 C53 doub Y N 37 AR1 N23 C33 doub Y N 38 AR1 C33 N43 sing Y N 39 AR1 C33 C3 sing N N 40 AR1 N43 CN3 sing N N 41 AR1 N43 C53 sing Y N 42 AR1 CN3 HN31 sing N N 43 AR1 CN3 HN32 sing N N 44 AR1 CN3 HN33 sing N N 45 AR1 C53 H53 sing N N 46 AR1 C3 O3 doub N N 47 AR1 C3 NT sing N N 48 AR1 NT C1T sing N N 49 AR1 NT HT sing N N 50 AR1 C1T C2T sing N N 51 AR1 C1T H1T1 sing N N 52 AR1 C1T H1T2 sing N N 53 AR1 C2T N3T sing N N 54 AR1 C2T H2T1 sing N N 55 AR1 C2T H2T2 sing N N 56 AR1 N3T CNT sing N N 57 AR1 N3T CMT sing N N 58 AR1 N3T HNT sing N N 59 AR1 CNT HNT1 sing N N 60 AR1 CNT HNT2 sing N N 61 AR1 CNT HNT3 sing N N 62 AR1 CMT HMT1 sing N N 63 AR1 CMT HMT2 sing N N 64 AR1 CMT HMT3 sing N N 65 DA OP3 P sing N N 66 DA OP3 HOP3 sing N N 67 DA P OP1 doub N N 68 DA P OP2 sing N N 69 DA P "O5'" sing N N 70 DA OP2 HOP2 sing N N 71 DA "O5'" "C5'" sing N N 72 DA "C5'" "C4'" sing N N 73 DA "C5'" "H5'" sing N N 74 DA "C5'" "H5''" sing N N 75 DA "C4'" "O4'" sing N N 76 DA "C4'" "C3'" sing N N 77 DA "C4'" "H4'" sing N N 78 DA "O4'" "C1'" sing N N 79 DA "C3'" "O3'" sing N N 80 DA "C3'" "C2'" sing N N 81 DA "C3'" "H3'" sing N N 82 DA "O3'" "HO3'" sing N N 83 DA "C2'" "C1'" sing N N 84 DA "C2'" "H2'" sing N N 85 DA "C2'" "H2''" sing N N 86 DA "C1'" N9 sing N N 87 DA "C1'" "H1'" sing N N 88 DA N9 C8 sing Y N 89 DA N9 C4 sing Y N 90 DA C8 N7 doub Y N 91 DA C8 H8 sing N N 92 DA N7 C5 sing Y N 93 DA C5 C6 sing Y N 94 DA C5 C4 doub Y N 95 DA C6 N6 sing N N 96 DA C6 N1 doub Y N 97 DA N6 H61 sing N N 98 DA N6 H62 sing N N 99 DA N1 C2 sing Y N 100 DA C2 N3 doub Y N 101 DA C2 H2 sing N N 102 DA N3 C4 sing Y N 103 DC OP3 P sing N N 104 DC OP3 HOP3 sing N N 105 DC P OP1 doub N N 106 DC P OP2 sing N N 107 DC P "O5'" sing N N 108 DC OP2 HOP2 sing N N 109 DC "O5'" "C5'" sing N N 110 DC "C5'" "C4'" sing N N 111 DC "C5'" "H5'" sing N N 112 DC "C5'" "H5''" sing N N 113 DC "C4'" "O4'" sing N N 114 DC "C4'" "C3'" sing N N 115 DC "C4'" "H4'" sing N N 116 DC "O4'" "C1'" sing N N 117 DC "C3'" "O3'" sing N N 118 DC "C3'" "C2'" sing N N 119 DC "C3'" "H3'" sing N N 120 DC "O3'" "HO3'" sing N N 121 DC "C2'" "C1'" sing N N 122 DC "C2'" "H2'" sing N N 123 DC "C2'" "H2''" sing N N 124 DC "C1'" N1 sing N N 125 DC "C1'" "H1'" sing N N 126 DC N1 C2 sing N N 127 DC N1 C6 sing N N 128 DC C2 O2 doub N N 129 DC C2 N3 sing N N 130 DC N3 C4 doub N N 131 DC C4 N4 sing N N 132 DC C4 C5 sing N N 133 DC N4 H41 sing N N 134 DC N4 H42 sing N N 135 DC C5 C6 doub N N 136 DC C5 H5 sing N N 137 DC C6 H6 sing N N 138 DG OP3 P sing N N 139 DG OP3 HOP3 sing N N 140 DG P OP1 doub N N 141 DG P OP2 sing N N 142 DG P "O5'" sing N N 143 DG OP2 HOP2 sing N N 144 DG "O5'" "C5'" sing N N 145 DG "C5'" "C4'" sing N N 146 DG "C5'" "H5'" sing N N 147 DG "C5'" "H5''" sing N N 148 DG "C4'" "O4'" sing N N 149 DG "C4'" "C3'" sing N N 150 DG "C4'" "H4'" sing N N 151 DG "O4'" "C1'" sing N N 152 DG "C3'" "O3'" sing N N 153 DG "C3'" "C2'" sing N N 154 DG "C3'" "H3'" sing N N 155 DG "O3'" "HO3'" sing N N 156 DG "C2'" "C1'" sing N N 157 DG "C2'" "H2'" sing N N 158 DG "C2'" "H2''" sing N N 159 DG "C1'" N9 sing N N 160 DG "C1'" "H1'" sing N N 161 DG N9 C8 sing Y N 162 DG N9 C4 sing Y N 163 DG C8 N7 doub Y N 164 DG C8 H8 sing N N 165 DG N7 C5 sing Y N 166 DG C5 C6 sing N N 167 DG C5 C4 doub Y N 168 DG C6 O6 doub N N 169 DG C6 N1 sing N N 170 DG N1 C2 sing N N 171 DG N1 H1 sing N N 172 DG C2 N2 sing N N 173 DG C2 N3 doub N N 174 DG N2 H21 sing N N 175 DG N2 H22 sing N N 176 DG N3 C4 sing N N 177 DT OP3 P sing N N 178 DT OP3 HOP3 sing N N 179 DT P OP1 doub N N 180 DT P OP2 sing N N 181 DT P "O5'" sing N N 182 DT OP2 HOP2 sing N N 183 DT "O5'" "C5'" sing N N 184 DT "C5'" "C4'" sing N N 185 DT "C5'" "H5'" sing N N 186 DT "C5'" "H5''" sing N N 187 DT "C4'" "O4'" sing N N 188 DT "C4'" "C3'" sing N N 189 DT "C4'" "H4'" sing N N 190 DT "O4'" "C1'" sing N N 191 DT "C3'" "O3'" sing N N 192 DT "C3'" "C2'" sing N N 193 DT "C3'" "H3'" sing N N 194 DT "O3'" "HO3'" sing N N 195 DT "C2'" "C1'" sing N N 196 DT "C2'" "H2'" sing N N 197 DT "C2'" "H2''" sing N N 198 DT "C1'" N1 sing N N 199 DT "C1'" "H1'" sing N N 200 DT N1 C2 sing N N 201 DT N1 C6 sing N N 202 DT C2 O2 doub N N 203 DT C2 N3 sing N N 204 DT N3 C4 sing N N 205 DT N3 H3 sing N N 206 DT C4 O4 doub N N 207 DT C4 C5 sing N N 208 DT C5 C7 sing N N 209 DT C5 C6 doub N N 210 DT C7 H71 sing N N 211 DT C7 H72 sing N N 212 DT C7 H73 sing N N 213 DT C6 H6 sing N N 214 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CYZ 'double helix' 1CYZ 'b-form double helix' 1CYZ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.477 -0.029 -0.557 -18.277 -2.432 2.396 1 A_DG1:DC25_B A 1 ? B 25 ? 19 1 1 A DA 2 1_555 B DT 9 1_555 -0.244 -0.089 0.025 -16.527 13.974 3.147 2 A_DA2:DT24_B A 2 ? B 24 ? 20 1 1 A DA 3 1_555 B DT 8 1_555 -0.338 -0.139 -0.072 -6.924 -3.205 6.155 3 A_DA3:DT23_B A 3 ? B 23 ? 20 1 1 A DC 4 1_555 B DG 7 1_555 -0.112 -0.207 0.330 -7.131 -18.137 -6.604 4 A_DC4:DG22_B A 4 ? B 22 ? 19 1 1 A DT 5 1_555 B DG 6 1_555 2.349 -0.450 0.142 5.619 -4.908 -3.995 5 A_DT5:DG21_B A 5 ? B 21 ? 28 ? 1 A DG 6 1_555 B DT 5 1_555 -2.334 -0.461 0.143 -5.421 -4.973 -4.016 6 A_DG6:DT20_B A 6 ? B 20 ? 28 ? 1 A DG 7 1_555 B DC 4 1_555 0.112 -0.231 0.333 7.286 -18.264 -6.619 7 A_DG7:DC19_B A 7 ? B 19 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 0.314 -0.158 -0.060 6.917 -3.389 6.150 8 A_DT8:DA18_B A 8 ? B 18 ? 20 1 1 A DT 9 1_555 B DA 2 1_555 0.201 -0.088 0.027 16.441 13.795 3.135 9 A_DT9:DA17_B A 9 ? B 17 ? 20 1 1 A DC 10 1_555 B DG 1 1_555 0.437 0.007 -0.551 18.071 -2.502 2.398 10 A_DC10:DG16_B A 10 ? B 16 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DA 2 1_555 B DT 9 1_555 -0.074 -1.113 3.355 -2.960 -3.454 36.033 -1.283 -0.312 3.439 -5.556 4.762 36.309 1 AA_DG1DA2:DT24DC25_BB A 1 ? B 25 ? A 2 ? B 24 ? 1 A DA 2 1_555 B DT 9 1_555 A DA 3 1_555 B DT 8 1_555 0.809 -0.927 3.306 0.200 15.614 29.658 -4.058 -1.374 2.523 28.178 -0.361 33.436 2 AA_DA2DA3:DT23DT24_BB A 2 ? B 24 ? A 3 ? B 23 ? 1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -2.033 -0.175 3.260 -4.056 -13.064 36.919 1.360 2.521 3.329 -19.813 6.152 39.289 3 AA_DA3DC4:DG22DT23_BB A 3 ? B 23 ? A 4 ? B 22 ? 1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DG 6 1_555 0.491 0.513 2.981 0.360 1.240 34.432 0.690 -0.777 3.002 2.094 -0.609 34.456 4 AA_DC4DT5:DG21DG22_BB A 4 ? B 22 ? A 5 ? B 21 ? 1 A DT 5 1_555 B DG 6 1_555 A DG 6 1_555 B DT 5 1_555 0.000 1.265 3.363 -0.005 -7.530 32.961 3.379 0.000 3.009 -13.060 0.009 33.787 5 AA_DT5DG6:DT20DG21_BB A 5 ? B 21 ? A 6 ? B 20 ? 1 A DG 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 -0.491 0.513 2.981 -0.364 1.234 34.433 0.690 0.777 3.002 2.084 0.614 34.456 6 AA_DG6DG7:DC19DT20_BB A 6 ? B 20 ? A 7 ? B 19 ? 1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 2.033 -0.175 3.262 4.058 -13.065 36.928 1.360 -2.520 3.331 -19.812 -6.153 39.297 7 AA_DG7DT8:DA18DC19_BB A 7 ? B 19 ? A 8 ? B 18 ? 1 A DT 8 1_555 B DA 3 1_555 A DT 9 1_555 B DA 2 1_555 -0.808 -0.927 3.305 -0.202 15.602 29.662 -4.056 1.374 2.523 28.157 0.364 33.434 8 AA_DT8DT9:DA17DA18_BB A 8 ? B 18 ? A 9 ? B 17 ? 1 A DT 9 1_555 B DA 2 1_555 A DC 10 1_555 B DG 1 1_555 0.074 -1.114 3.356 2.962 -3.446 36.032 -1.285 0.312 3.439 -5.544 -4.764 36.308 9 AA_DT9DC10:DG16DA17_BB A 9 ? B 17 ? A 10 ? B 16 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 750 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1CYZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_