data_1CYZ
#
_entry.id 1CYZ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.392
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1CYZ pdb_00001cyz 10.2210/pdb1cyz/pdb
RCSB RCSB009629 ? ?
WWPDB D_1000009629 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1999-09-14
2 'Structure model' 1 1 2008-04-27
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2022-02-16
5 'Structure model' 1 4 2024-05-22
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Structure summary'
7 5 'Structure model' 'Data collection'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' chem_comp
2 4 'Structure model' database_2
3 4 'Structure model' entity
4 4 'Structure model' pdbx_entity_nonpoly
5 4 'Structure model' pdbx_nmr_software
6 4 'Structure model' pdbx_struct_assembly
7 4 'Structure model' pdbx_struct_oper_list
8 4 'Structure model' struct_site
9 5 'Structure model' chem_comp_atom
10 5 'Structure model' chem_comp_bond
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_chem_comp.name'
2 4 'Structure model' '_database_2.pdbx_DOI'
3 4 'Structure model' '_database_2.pdbx_database_accession'
4 4 'Structure model' '_entity.pdbx_description'
5 4 'Structure model' '_pdbx_entity_nonpoly.name'
6 4 'Structure model' '_pdbx_nmr_software.name'
7 4 'Structure model' '_struct_site.pdbx_auth_asym_id'
8 4 'Structure model' '_struct_site.pdbx_auth_comp_id'
9 4 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1CYZ
_pdbx_database_status.recvd_initial_deposition_date 1999-08-31
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr REL
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_pdbx_database_related.db_name PDB
_pdbx_database_related.db_id 1B0S
_pdbx_database_related.details '1B0S CONTAINS THE NMR STRUCTURE OF GAACCGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX'
_pdbx_database_related.content_type unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Yang, X.-L.' 1
'Hubbard IV, R.B.' 2
'Lee, M.' 3
'Tao, Z.-F.' 4
'Sugiyama, H.' 5
'Wang, A.H.-J.' 6
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Imidazole-imidazole pair as a minor groove recognition motif for T:G mismatched base pairs'
'Nucleic Acids Res.' 27 4183 4190 1999 NARHAD UK 0305-1048 0389 ? 10518609 10.1093/nar/27.21.4183
1 'Binding of AR-1-144, a tri-imidazole DNA minor groove binder, to CCGG sequence analyzed by NMR spectroscopy'
Eur.J.Biochem. 263 646 655 1999 EJBCAI IX 0014-2956 0262 ? ? 10.1046/j.1432-1327.1999.00515.x
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Yang, X.-L.' 1 ?
primary 'Hubbard IV, R.B.' 2 ?
primary 'Lee, M.' 3 ?
primary 'Tao, Z.-F.' 4 ?
primary 'Sugiyama, H.' 5 ?
primary 'Wang, A.H.-J.' 6 ?
1 'Yang, X.-L.' 7 ?
1 'Kaenzig, C.' 8 ?
1 'Lee, M.' 9 ?
1 'Wang, A.H.-J.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*GP*AP*AP*CP*TP*GP*GP*TP*TP*C)-3'" 3060.016 2 ? ? ? ?
2 non-polymer syn
;(2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM
;
486.508 2 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DG)(DA)(DA)(DC)(DT)(DG)(DG)(DT)(DT)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GAACTGGTTC
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name
;(2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM
;
_pdbx_entity_nonpoly.comp_id AR1
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DA n
1 3 DA n
1 4 DC n
1 5 DT n
1 6 DG n
1 7 DG n
1 8 DT n
1 9 DT n
1 10 DC n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
AR1 non-polymer .
;(2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM
;
'TRI-IMIDAZOLE DNA MINOR GROOVE BINDER; AR-1-144' 'C20 H28 N11 O4 1' 486.508
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P'
331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P'
307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P'
347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG G A . n
A 1 2 DA 2 2 2 DA A A . n
A 1 3 DA 3 3 3 DA A A . n
A 1 4 DC 4 4 4 DC C A . n
A 1 5 DT 5 5 5 DT T A . n
A 1 6 DG 6 6 6 DG G A . n
A 1 7 DG 7 7 7 DG G A . n
A 1 8 DT 8 8 8 DT T A . n
A 1 9 DT 9 9 9 DT T A . n
A 1 10 DC 10 10 10 DC C A . n
B 1 1 DG 1 16 16 DG G B . n
B 1 2 DA 2 17 17 DA A B . n
B 1 3 DA 3 18 18 DA A B . n
B 1 4 DC 4 19 19 DC C B . n
B 1 5 DT 5 20 20 DT T B . n
B 1 6 DG 6 21 21 DG G B . n
B 1 7 DG 7 22 22 DG G B . n
B 1 8 DT 8 23 23 DT T B . n
B 1 9 DT 9 24 24 DT T B . n
B 1 10 DC 10 25 25 DC C B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AR1 1 12 12 AR1 AR1 A .
D 2 AR1 1 26 26 AR1 AR1 B .
#
_cell.entry_id 1CYZ
_cell.length_a 1.000
_cell.length_b 1.000
_cell.length_c 1.000
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 1
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1CYZ
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
#
_exptl.entry_id 1CYZ
_exptl.method 'SOLUTION NMR'
_exptl.crystals_number ?
#
_database_PDB_matrix.entry_id 1CYZ
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1CYZ
_struct.title 'NMR STRUCTURE OF THE GAACTGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1CYZ
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'T:G RECOGNIZED BY IM/IM PAIR IN THE DNA MINOR GROOVE, DNA'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1CYZ
_struct_ref.pdbx_db_accession 1CYZ
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1CYZ A 1 ? 10 ? 1CYZ 1 ? 10 ? 1 10
2 1 1CYZ B 1 ? 10 ? 1CYZ 16 ? 25 ? 16 25
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 2 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 2 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DG 6 O6 ? ? A DT 5 B DG 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog12 hydrog ? ? A DT 5 O2 ? ? ? 1_555 B DG 6 N1 ? ? A DT 5 B DG 21 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DT 5 O2 ? ? A DG 6 B DT 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DT 5 N3 ? ? A DG 6 B DT 20 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ?
hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 9 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 9 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A AR1 12 ? 10 'BINDING SITE FOR RESIDUE AR1 A 12'
AC2 Software B AR1 26 ? 10 'BINDING SITE FOR RESIDUE AR1 B 26'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 10 DC A 4 ? DC A 4 . ? 1_555 ?
2 AC1 10 DT A 5 ? DT A 5 . ? 1_555 ?
3 AC1 10 DG A 6 ? DG A 6 . ? 1_555 ?
4 AC1 10 DG A 7 ? DG A 7 . ? 1_555 ?
5 AC1 10 DT A 8 ? DT A 8 . ? 1_555 ?
6 AC1 10 DT A 9 ? DT A 9 . ? 1_555 ?
7 AC1 10 DC B 4 ? DC B 19 . ? 1_555 ?
8 AC1 10 DG B 6 ? DG B 21 . ? 1_555 ?
9 AC1 10 DG B 7 ? DG B 22 . ? 1_555 ?
10 AC1 10 AR1 D . ? AR1 B 26 . ? 1_555 ?
11 AC2 10 DC A 4 ? DC A 4 . ? 1_555 ?
12 AC2 10 DG A 6 ? DG A 6 . ? 1_555 ?
13 AC2 10 DG A 7 ? DG A 7 . ? 1_555 ?
14 AC2 10 AR1 C . ? AR1 A 12 . ? 1_555 ?
15 AC2 10 DC B 4 ? DC B 19 . ? 1_555 ?
16 AC2 10 DT B 5 ? DT B 20 . ? 1_555 ?
17 AC2 10 DG B 6 ? DG B 21 . ? 1_555 ?
18 AC2 10 DG B 7 ? DG B 22 . ? 1_555 ?
19 AC2 10 DT B 8 ? DT B 23 . ? 1_555 ?
20 AC2 10 DT B 9 ? DT B 24 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? 1.555 1.512 0.043 0.007 N
2 1 C5 A DT 5 ? ? C7 A DT 5 ? ? 1.540 1.496 0.044 0.006 N
3 1 "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.556 1.512 0.044 0.007 N
4 1 C5 B DT 20 ? ? C7 B DT 20 ? ? 1.540 1.496 0.044 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.95 108.30 6.65 0.30 N
2 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.46 108.30 3.16 0.30 N
3 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.91 105.90 -4.99 0.80 N
4 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 112.45 108.30 4.15 0.30 N
5 1 "O4'" A DG 7 ? ? "C4'" A DG 7 ? ? "C3'" A DG 7 ? ? 110.61 106.00 4.61 0.60 N
6 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? "C2'" A DG 7 ? ? 100.60 105.90 -5.30 0.80 N
7 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 117.47 108.30 9.17 0.30 N
8 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.54 122.90 -4.36 0.60 N
9 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 114.96 108.30 6.66 0.30 N
10 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.48 108.30 3.18 0.30 N
11 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.88 105.90 -5.02 0.80 N
12 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 112.43 108.30 4.13 0.30 N
13 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 110.65 106.00 4.65 0.60 N
14 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 100.56 105.90 -5.34 0.80 N
15 1 "O4'" B DT 23 ? ? "C1'" B DT 23 ? ? N1 B DT 23 ? ? 117.48 108.30 9.18 0.30 N
16 1 C6 B DT 24 ? ? C5 B DT 24 ? ? C7 B DT 24 ? ? 118.53 122.90 -4.37 0.60 N
#
_pdbx_nmr_ensemble.entry_id 1CYZ
_pdbx_nmr_ensemble.conformers_calculated_total_number 11
_pdbx_nmr_ensemble.conformers_submitted_total_number 1
_pdbx_nmr_ensemble.conformer_selection_criteria 'REFINED AVERAGE STRUCTURE'
_pdbx_nmr_ensemble.average_constraints_per_residue ?
_pdbx_nmr_ensemble.average_constraint_violations_per_residue ?
_pdbx_nmr_ensemble.maximum_distance_constraint_violation ?
_pdbx_nmr_ensemble.average_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ?
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ?
_pdbx_nmr_ensemble.distance_constraint_violation_method ?
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ?
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ?
#
_pdbx_nmr_representative.entry_id 1CYZ
_pdbx_nmr_representative.conformer_id 1
_pdbx_nmr_representative.selection_criteria 'refined average structure'
#
_pdbx_nmr_sample_details.solution_id 1
_pdbx_nmr_sample_details.contents '1.5 MM DNA DUPLEX; 20 MM PHOSPHATE BUFFER; 100% D2O OR 90% H2O, 10% D2O'
_pdbx_nmr_sample_details.solvent_system ?
#
_pdbx_nmr_exptl_sample_conditions.conditions_id 1
_pdbx_nmr_exptl_sample_conditions.temperature 275
_pdbx_nmr_exptl_sample_conditions.pressure AMBIENT
_pdbx_nmr_exptl_sample_conditions.pH 7
_pdbx_nmr_exptl_sample_conditions.ionic_strength 'NO ADDITIONAL SALT'
_pdbx_nmr_exptl_sample_conditions.pressure_units ?
_pdbx_nmr_exptl_sample_conditions.temperature_units K
#
loop_
_pdbx_nmr_exptl.experiment_id
_pdbx_nmr_exptl.conditions_id
_pdbx_nmr_exptl.type
_pdbx_nmr_exptl.solution_id
1 1 '2D NOESY' 1
2 1 TOCSY 1
#
_pdbx_nmr_details.entry_id 1CYZ
_pdbx_nmr_details.text 'THIS STRUCTURE WAS DETERMINED USING 2D HOMONUCLEAR TECHNIQUES WITH BACK NOE CALCULATION'
#
_pdbx_nmr_refine.entry_id 1CYZ
_pdbx_nmr_refine.method 'NOE-RESTRAINED CONJUGATE GRADIENT REFINEMENT IN X-PLOR; FULL MATRIX RELAXATION'
_pdbx_nmr_refine.details ?
_pdbx_nmr_refine.software_ordinal 1
#
loop_
_pdbx_nmr_software.classification
_pdbx_nmr_software.name
_pdbx_nmr_software.version
_pdbx_nmr_software.authors
_pdbx_nmr_software.ordinal
'data analysis' Felix '1.1 AND 98' MSI 1
refinement X-PLOR 3.851 BRUNGER 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
AR1 CA C N N 1
AR1 OA O N N 2
AR1 N1 N N N 3
AR1 C11 C Y N 4
AR1 N21 N Y N 5
AR1 C31 C Y N 6
AR1 N41 N Y N 7
AR1 CN1 C N N 8
AR1 C51 C Y N 9
AR1 C1 C N N 10
AR1 O1 O N N 11
AR1 N2 N N N 12
AR1 C12 C Y N 13
AR1 N22 N Y N 14
AR1 C32 C Y N 15
AR1 N42 N Y N 16
AR1 CN2 C N N 17
AR1 C52 C Y N 18
AR1 C2 C N N 19
AR1 O2 O N N 20
AR1 N3 N N N 21
AR1 C13 C Y N 22
AR1 N23 N Y N 23
AR1 C33 C Y N 24
AR1 N43 N Y N 25
AR1 CN3 C N N 26
AR1 C53 C Y N 27
AR1 C3 C N N 28
AR1 O3 O N N 29
AR1 NT N N N 30
AR1 C1T C N N 31
AR1 C2T C N N 32
AR1 N3T N N N 33
AR1 CNT C N N 34
AR1 CMT C N N 35
AR1 HA H N N 36
AR1 HN1 H N N 37
AR1 HN11 H N N 38
AR1 HN12 H N N 39
AR1 HN13 H N N 40
AR1 H51 H N N 41
AR1 HN2 H N N 42
AR1 HN21 H N N 43
AR1 HN22 H N N 44
AR1 HN23 H N N 45
AR1 H52 H N N 46
AR1 HN3 H N N 47
AR1 HN31 H N N 48
AR1 HN32 H N N 49
AR1 HN33 H N N 50
AR1 H53 H N N 51
AR1 HT H N N 52
AR1 H1T1 H N N 53
AR1 H1T2 H N N 54
AR1 H2T1 H N N 55
AR1 H2T2 H N N 56
AR1 HNT H N N 57
AR1 HNT1 H N N 58
AR1 HNT2 H N N 59
AR1 HNT3 H N N 60
AR1 HMT1 H N N 61
AR1 HMT2 H N N 62
AR1 HMT3 H N N 63
DA OP3 O N N 64
DA P P N N 65
DA OP1 O N N 66
DA OP2 O N N 67
DA "O5'" O N N 68
DA "C5'" C N N 69
DA "C4'" C N R 70
DA "O4'" O N N 71
DA "C3'" C N S 72
DA "O3'" O N N 73
DA "C2'" C N N 74
DA "C1'" C N R 75
DA N9 N Y N 76
DA C8 C Y N 77
DA N7 N Y N 78
DA C5 C Y N 79
DA C6 C Y N 80
DA N6 N N N 81
DA N1 N Y N 82
DA C2 C Y N 83
DA N3 N Y N 84
DA C4 C Y N 85
DA HOP3 H N N 86
DA HOP2 H N N 87
DA "H5'" H N N 88
DA "H5''" H N N 89
DA "H4'" H N N 90
DA "H3'" H N N 91
DA "HO3'" H N N 92
DA "H2'" H N N 93
DA "H2''" H N N 94
DA "H1'" H N N 95
DA H8 H N N 96
DA H61 H N N 97
DA H62 H N N 98
DA H2 H N N 99
DC OP3 O N N 100
DC P P N N 101
DC OP1 O N N 102
DC OP2 O N N 103
DC "O5'" O N N 104
DC "C5'" C N N 105
DC "C4'" C N R 106
DC "O4'" O N N 107
DC "C3'" C N S 108
DC "O3'" O N N 109
DC "C2'" C N N 110
DC "C1'" C N R 111
DC N1 N N N 112
DC C2 C N N 113
DC O2 O N N 114
DC N3 N N N 115
DC C4 C N N 116
DC N4 N N N 117
DC C5 C N N 118
DC C6 C N N 119
DC HOP3 H N N 120
DC HOP2 H N N 121
DC "H5'" H N N 122
DC "H5''" H N N 123
DC "H4'" H N N 124
DC "H3'" H N N 125
DC "HO3'" H N N 126
DC "H2'" H N N 127
DC "H2''" H N N 128
DC "H1'" H N N 129
DC H41 H N N 130
DC H42 H N N 131
DC H5 H N N 132
DC H6 H N N 133
DG OP3 O N N 134
DG P P N N 135
DG OP1 O N N 136
DG OP2 O N N 137
DG "O5'" O N N 138
DG "C5'" C N N 139
DG "C4'" C N R 140
DG "O4'" O N N 141
DG "C3'" C N S 142
DG "O3'" O N N 143
DG "C2'" C N N 144
DG "C1'" C N R 145
DG N9 N Y N 146
DG C8 C Y N 147
DG N7 N Y N 148
DG C5 C Y N 149
DG C6 C N N 150
DG O6 O N N 151
DG N1 N N N 152
DG C2 C N N 153
DG N2 N N N 154
DG N3 N N N 155
DG C4 C Y N 156
DG HOP3 H N N 157
DG HOP2 H N N 158
DG "H5'" H N N 159
DG "H5''" H N N 160
DG "H4'" H N N 161
DG "H3'" H N N 162
DG "HO3'" H N N 163
DG "H2'" H N N 164
DG "H2''" H N N 165
DG "H1'" H N N 166
DG H8 H N N 167
DG H1 H N N 168
DG H21 H N N 169
DG H22 H N N 170
DT OP3 O N N 171
DT P P N N 172
DT OP1 O N N 173
DT OP2 O N N 174
DT "O5'" O N N 175
DT "C5'" C N N 176
DT "C4'" C N R 177
DT "O4'" O N N 178
DT "C3'" C N S 179
DT "O3'" O N N 180
DT "C2'" C N N 181
DT "C1'" C N R 182
DT N1 N N N 183
DT C2 C N N 184
DT O2 O N N 185
DT N3 N N N 186
DT C4 C N N 187
DT O4 O N N 188
DT C5 C N N 189
DT C7 C N N 190
DT C6 C N N 191
DT HOP3 H N N 192
DT HOP2 H N N 193
DT "H5'" H N N 194
DT "H5''" H N N 195
DT "H4'" H N N 196
DT "H3'" H N N 197
DT "HO3'" H N N 198
DT "H2'" H N N 199
DT "H2''" H N N 200
DT "H1'" H N N 201
DT H3 H N N 202
DT H71 H N N 203
DT H72 H N N 204
DT H73 H N N 205
DT H6 H N N 206
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AR1 CA OA doub N N 1
AR1 CA N1 sing N N 2
AR1 CA HA sing N N 3
AR1 N1 C11 sing N N 4
AR1 N1 HN1 sing N N 5
AR1 C11 N21 sing Y N 6
AR1 C11 C51 doub Y N 7
AR1 N21 C31 doub Y N 8
AR1 C31 N41 sing Y N 9
AR1 C31 C1 sing N N 10
AR1 N41 CN1 sing N N 11
AR1 N41 C51 sing Y N 12
AR1 CN1 HN11 sing N N 13
AR1 CN1 HN12 sing N N 14
AR1 CN1 HN13 sing N N 15
AR1 C51 H51 sing N N 16
AR1 C1 O1 doub N N 17
AR1 C1 N2 sing N N 18
AR1 N2 C12 sing N N 19
AR1 N2 HN2 sing N N 20
AR1 C12 N22 sing Y N 21
AR1 C12 C52 doub Y N 22
AR1 N22 C32 doub Y N 23
AR1 C32 N42 sing Y N 24
AR1 C32 C2 sing N N 25
AR1 N42 CN2 sing N N 26
AR1 N42 C52 sing Y N 27
AR1 CN2 HN21 sing N N 28
AR1 CN2 HN22 sing N N 29
AR1 CN2 HN23 sing N N 30
AR1 C52 H52 sing N N 31
AR1 C2 O2 doub N N 32
AR1 C2 N3 sing N N 33
AR1 N3 C13 sing N N 34
AR1 N3 HN3 sing N N 35
AR1 C13 N23 sing Y N 36
AR1 C13 C53 doub Y N 37
AR1 N23 C33 doub Y N 38
AR1 C33 N43 sing Y N 39
AR1 C33 C3 sing N N 40
AR1 N43 CN3 sing N N 41
AR1 N43 C53 sing Y N 42
AR1 CN3 HN31 sing N N 43
AR1 CN3 HN32 sing N N 44
AR1 CN3 HN33 sing N N 45
AR1 C53 H53 sing N N 46
AR1 C3 O3 doub N N 47
AR1 C3 NT sing N N 48
AR1 NT C1T sing N N 49
AR1 NT HT sing N N 50
AR1 C1T C2T sing N N 51
AR1 C1T H1T1 sing N N 52
AR1 C1T H1T2 sing N N 53
AR1 C2T N3T sing N N 54
AR1 C2T H2T1 sing N N 55
AR1 C2T H2T2 sing N N 56
AR1 N3T CNT sing N N 57
AR1 N3T CMT sing N N 58
AR1 N3T HNT sing N N 59
AR1 CNT HNT1 sing N N 60
AR1 CNT HNT2 sing N N 61
AR1 CNT HNT3 sing N N 62
AR1 CMT HMT1 sing N N 63
AR1 CMT HMT2 sing N N 64
AR1 CMT HMT3 sing N N 65
DA OP3 P sing N N 66
DA OP3 HOP3 sing N N 67
DA P OP1 doub N N 68
DA P OP2 sing N N 69
DA P "O5'" sing N N 70
DA OP2 HOP2 sing N N 71
DA "O5'" "C5'" sing N N 72
DA "C5'" "C4'" sing N N 73
DA "C5'" "H5'" sing N N 74
DA "C5'" "H5''" sing N N 75
DA "C4'" "O4'" sing N N 76
DA "C4'" "C3'" sing N N 77
DA "C4'" "H4'" sing N N 78
DA "O4'" "C1'" sing N N 79
DA "C3'" "O3'" sing N N 80
DA "C3'" "C2'" sing N N 81
DA "C3'" "H3'" sing N N 82
DA "O3'" "HO3'" sing N N 83
DA "C2'" "C1'" sing N N 84
DA "C2'" "H2'" sing N N 85
DA "C2'" "H2''" sing N N 86
DA "C1'" N9 sing N N 87
DA "C1'" "H1'" sing N N 88
DA N9 C8 sing Y N 89
DA N9 C4 sing Y N 90
DA C8 N7 doub Y N 91
DA C8 H8 sing N N 92
DA N7 C5 sing Y N 93
DA C5 C6 sing Y N 94
DA C5 C4 doub Y N 95
DA C6 N6 sing N N 96
DA C6 N1 doub Y N 97
DA N6 H61 sing N N 98
DA N6 H62 sing N N 99
DA N1 C2 sing Y N 100
DA C2 N3 doub Y N 101
DA C2 H2 sing N N 102
DA N3 C4 sing Y N 103
DC OP3 P sing N N 104
DC OP3 HOP3 sing N N 105
DC P OP1 doub N N 106
DC P OP2 sing N N 107
DC P "O5'" sing N N 108
DC OP2 HOP2 sing N N 109
DC "O5'" "C5'" sing N N 110
DC "C5'" "C4'" sing N N 111
DC "C5'" "H5'" sing N N 112
DC "C5'" "H5''" sing N N 113
DC "C4'" "O4'" sing N N 114
DC "C4'" "C3'" sing N N 115
DC "C4'" "H4'" sing N N 116
DC "O4'" "C1'" sing N N 117
DC "C3'" "O3'" sing N N 118
DC "C3'" "C2'" sing N N 119
DC "C3'" "H3'" sing N N 120
DC "O3'" "HO3'" sing N N 121
DC "C2'" "C1'" sing N N 122
DC "C2'" "H2'" sing N N 123
DC "C2'" "H2''" sing N N 124
DC "C1'" N1 sing N N 125
DC "C1'" "H1'" sing N N 126
DC N1 C2 sing N N 127
DC N1 C6 sing N N 128
DC C2 O2 doub N N 129
DC C2 N3 sing N N 130
DC N3 C4 doub N N 131
DC C4 N4 sing N N 132
DC C4 C5 sing N N 133
DC N4 H41 sing N N 134
DC N4 H42 sing N N 135
DC C5 C6 doub N N 136
DC C5 H5 sing N N 137
DC C6 H6 sing N N 138
DG OP3 P sing N N 139
DG OP3 HOP3 sing N N 140
DG P OP1 doub N N 141
DG P OP2 sing N N 142
DG P "O5'" sing N N 143
DG OP2 HOP2 sing N N 144
DG "O5'" "C5'" sing N N 145
DG "C5'" "C4'" sing N N 146
DG "C5'" "H5'" sing N N 147
DG "C5'" "H5''" sing N N 148
DG "C4'" "O4'" sing N N 149
DG "C4'" "C3'" sing N N 150
DG "C4'" "H4'" sing N N 151
DG "O4'" "C1'" sing N N 152
DG "C3'" "O3'" sing N N 153
DG "C3'" "C2'" sing N N 154
DG "C3'" "H3'" sing N N 155
DG "O3'" "HO3'" sing N N 156
DG "C2'" "C1'" sing N N 157
DG "C2'" "H2'" sing N N 158
DG "C2'" "H2''" sing N N 159
DG "C1'" N9 sing N N 160
DG "C1'" "H1'" sing N N 161
DG N9 C8 sing Y N 162
DG N9 C4 sing Y N 163
DG C8 N7 doub Y N 164
DG C8 H8 sing N N 165
DG N7 C5 sing Y N 166
DG C5 C6 sing N N 167
DG C5 C4 doub Y N 168
DG C6 O6 doub N N 169
DG C6 N1 sing N N 170
DG N1 C2 sing N N 171
DG N1 H1 sing N N 172
DG C2 N2 sing N N 173
DG C2 N3 doub N N 174
DG N2 H21 sing N N 175
DG N2 H22 sing N N 176
DG N3 C4 sing N N 177
DT OP3 P sing N N 178
DT OP3 HOP3 sing N N 179
DT P OP1 doub N N 180
DT P OP2 sing N N 181
DT P "O5'" sing N N 182
DT OP2 HOP2 sing N N 183
DT "O5'" "C5'" sing N N 184
DT "C5'" "C4'" sing N N 185
DT "C5'" "H5'" sing N N 186
DT "C5'" "H5''" sing N N 187
DT "C4'" "O4'" sing N N 188
DT "C4'" "C3'" sing N N 189
DT "C4'" "H4'" sing N N 190
DT "O4'" "C1'" sing N N 191
DT "C3'" "O3'" sing N N 192
DT "C3'" "C2'" sing N N 193
DT "C3'" "H3'" sing N N 194
DT "O3'" "HO3'" sing N N 195
DT "C2'" "C1'" sing N N 196
DT "C2'" "H2'" sing N N 197
DT "C2'" "H2''" sing N N 198
DT "C1'" N1 sing N N 199
DT "C1'" "H1'" sing N N 200
DT N1 C2 sing N N 201
DT N1 C6 sing N N 202
DT C2 O2 doub N N 203
DT C2 N3 sing N N 204
DT N3 C4 sing N N 205
DT N3 H3 sing N N 206
DT C4 O4 doub N N 207
DT C4 C5 sing N N 208
DT C5 C7 sing N N 209
DT C5 C6 doub N N 210
DT C7 H71 sing N N 211
DT C7 H72 sing N N 212
DT C7 H73 sing N N 213
DT C6 H6 sing N N 214
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
1CYZ 'double helix'
1CYZ 'b-form double helix'
1CYZ 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 B DC 10 1_555 -0.477 -0.029 -0.557 -18.277 -2.432 2.396 1 A_DG1:DC25_B A 1 ? B 25 ? 19 1
1 A DA 2 1_555 B DT 9 1_555 -0.244 -0.089 0.025 -16.527 13.974 3.147 2 A_DA2:DT24_B A 2 ? B 24 ? 20 1
1 A DA 3 1_555 B DT 8 1_555 -0.338 -0.139 -0.072 -6.924 -3.205 6.155 3 A_DA3:DT23_B A 3 ? B 23 ? 20 1
1 A DC 4 1_555 B DG 7 1_555 -0.112 -0.207 0.330 -7.131 -18.137 -6.604 4 A_DC4:DG22_B A 4 ? B 22 ? 19 1
1 A DT 5 1_555 B DG 6 1_555 2.349 -0.450 0.142 5.619 -4.908 -3.995 5 A_DT5:DG21_B A 5 ? B 21 ? 28 ?
1 A DG 6 1_555 B DT 5 1_555 -2.334 -0.461 0.143 -5.421 -4.973 -4.016 6 A_DG6:DT20_B A 6 ? B 20 ? 28 ?
1 A DG 7 1_555 B DC 4 1_555 0.112 -0.231 0.333 7.286 -18.264 -6.619 7 A_DG7:DC19_B A 7 ? B 19 ? 19 1
1 A DT 8 1_555 B DA 3 1_555 0.314 -0.158 -0.060 6.917 -3.389 6.150 8 A_DT8:DA18_B A 8 ? B 18 ? 20 1
1 A DT 9 1_555 B DA 2 1_555 0.201 -0.088 0.027 16.441 13.795 3.135 9 A_DT9:DA17_B A 9 ? B 17 ? 20 1
1 A DC 10 1_555 B DG 1 1_555 0.437 0.007 -0.551 18.071 -2.502 2.398 10 A_DC10:DG16_B A 10 ? B 16 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 B DC 10 1_555 A DA 2 1_555 B DT 9 1_555 -0.074 -1.113 3.355 -2.960 -3.454 36.033 -1.283 -0.312 3.439 -5.556
4.762 36.309 1 AA_DG1DA2:DT24DC25_BB A 1 ? B 25 ? A 2 ? B 24 ?
1 A DA 2 1_555 B DT 9 1_555 A DA 3 1_555 B DT 8 1_555 0.809 -0.927 3.306 0.200 15.614 29.658 -4.058 -1.374 2.523 28.178
-0.361 33.436 2 AA_DA2DA3:DT23DT24_BB A 2 ? B 24 ? A 3 ? B 23 ?
1 A DA 3 1_555 B DT 8 1_555 A DC 4 1_555 B DG 7 1_555 -2.033 -0.175 3.260 -4.056 -13.064 36.919 1.360 2.521 3.329 -19.813
6.152 39.289 3 AA_DA3DC4:DG22DT23_BB A 3 ? B 23 ? A 4 ? B 22 ?
1 A DC 4 1_555 B DG 7 1_555 A DT 5 1_555 B DG 6 1_555 0.491 0.513 2.981 0.360 1.240 34.432 0.690 -0.777 3.002 2.094
-0.609 34.456 4 AA_DC4DT5:DG21DG22_BB A 4 ? B 22 ? A 5 ? B 21 ?
1 A DT 5 1_555 B DG 6 1_555 A DG 6 1_555 B DT 5 1_555 0.000 1.265 3.363 -0.005 -7.530 32.961 3.379 0.000 3.009 -13.060
0.009 33.787 5 AA_DT5DG6:DT20DG21_BB A 5 ? B 21 ? A 6 ? B 20 ?
1 A DG 6 1_555 B DT 5 1_555 A DG 7 1_555 B DC 4 1_555 -0.491 0.513 2.981 -0.364 1.234 34.433 0.690 0.777 3.002 2.084
0.614 34.456 6 AA_DG6DG7:DC19DT20_BB A 6 ? B 20 ? A 7 ? B 19 ?
1 A DG 7 1_555 B DC 4 1_555 A DT 8 1_555 B DA 3 1_555 2.033 -0.175 3.262 4.058 -13.065 36.928 1.360 -2.520 3.331 -19.812
-6.153 39.297 7 AA_DG7DT8:DA18DC19_BB A 7 ? B 19 ? A 8 ? B 18 ?
1 A DT 8 1_555 B DA 3 1_555 A DT 9 1_555 B DA 2 1_555 -0.808 -0.927 3.305 -0.202 15.602 29.662 -4.056 1.374 2.523 28.157
0.364 33.434 8 AA_DT8DT9:DA17DA18_BB A 8 ? B 18 ? A 9 ? B 17 ?
1 A DT 9 1_555 B DA 2 1_555 A DC 10 1_555 B DG 1 1_555 0.074 -1.114 3.356 2.962 -3.446 36.032 -1.285 0.312 3.439 -5.544
-4.764 36.308 9 AA_DT9DC10:DG16DA17_BB A 9 ? B 17 ? A 10 ? B 16 ?
#
_pdbx_nmr_spectrometer.spectrometer_id 1
_pdbx_nmr_spectrometer.model INOVA
_pdbx_nmr_spectrometer.manufacturer Varian
_pdbx_nmr_spectrometer.field_strength 750
_pdbx_nmr_spectrometer.type ?
#
_atom_sites.entry_id 1CYZ
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
H
N
O
P
#
loop_