HEADER TRANSFERASE 01-SEP-99 1CZ9 TITLE ATOMIC RESOLUTION ASV INTEGRASE CORE DOMAIN (D64N) FROM CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIAN SARCOMA VIRUS INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN SARCOMA VIRUS; SOURCE 3 ORGANISM_TAXID: 11876; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PRC23IN(52-207) KEYWDS MIXED BETA-SHEET SURROUNDED BY ALPHA-HELICES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,Z.DAUTER,F.YANG,J.ALEXANDRATOS,G.MERKEL,A.M.SKALKA, AUTHOR 2 A.WLODAWER REVDAT 6 07-FEB-24 1CZ9 1 REMARK REVDAT 5 03-NOV-21 1CZ9 1 REMARK SEQADV REVDAT 4 13-JUL-11 1CZ9 1 VERSN REVDAT 3 24-FEB-09 1CZ9 1 VERSN REVDAT 2 02-APR-00 1CZ9 3 ATOM JRNL REMARK COMPND REVDAT 1 08-SEP-99 1CZ9 0 JRNL AUTH J.LUBKOWSKI,Z.DAUTER,F.YANG,J.ALEXANDRATOS,G.MERKEL, JRNL AUTH 2 A.M.SKALKA,A.WLODAWER JRNL TITL ATOMIC RESOLUTION STRUCTURES OF THE CORE DOMAIN OF AVIAN JRNL TITL 2 SARCOMA VIRUS INTEGRASE AND ITS D64N MUTANT. JRNL REF BIOCHEMISTRY V. 38 13512 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10521258 JRNL DOI 10.1021/BI991362Q REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.146 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.146 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1077 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 53856 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.128 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 4174 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1218.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 939.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 1 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 1209 REMARK 3 NUMBER OF RESTRAINTS : 1445 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 ANGLE DISTANCES (A) : 0.029 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.020 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.343 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.074 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.084 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.049 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.081 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000009639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-98 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 10% ISOPROPANOL, 100 MM REMARK 280 CITRATE PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.18000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.28000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.77000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.28000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.59000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.77000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.59000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.18000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.36000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 694 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 LEU A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 58 REMARK 465 HIS A 198 REMARK 465 PHE A 199 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 GLY A 202 REMARK 465 GLU A 203 REMARK 465 ASN A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 THR A 207 REMARK 465 ASN A 208 REMARK 465 LEU A 209 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 151 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 70 CG ARG A 70 CD 0.182 REMARK 500 LYS A 119 CB LYS A 119 CG 0.582 REMARK 500 LYS A 166 CD LYS A 166 CE -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 114 CD - NE - CZ ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 114 NH1 - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS A 119 CA - CB - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 137 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 137 NH1 - CZ - NH2 ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 161 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS A 166 CG - CD - CE ANGL. DEV. = 35.3 DEGREES REMARK 500 MET A 177 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 178 -121.67 -131.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 74 0.09 SIDE CHAIN REMARK 500 ARG A 114 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 399 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ASV RELATED DB: PDB REMARK 900 SAME PROTEIN AT LOWER RESOLUTION REMARK 900 RELATED ID: 1CXQ RELATED DB: PDB REMARK 900 RELATED ID: 1CXU RELATED DB: PDB REMARK 900 RELATED ID: 1CZB RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED REMARK 999 HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL REMARK 999 STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS REMARK 999 SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP" REMARK 999 SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE REMARK 999 AMINO ACID RESIDUE DIFFERENCES NOTED (VAL->ALA 101 & REMARK 999 ARG->LYS 166). DBREF 1CZ9 A 52 207 UNP P03354 POL_RSVP 624 779 SEQADV 1CZ9 PRO A 48 UNP P03354 INSERTION SEQADV 1CZ9 LEU A 49 UNP P03354 INSERTION SEQADV 1CZ9 ARG A 50 UNP P03354 INSERTION SEQADV 1CZ9 GLU A 51 UNP P03354 INSERTION SEQADV 1CZ9 GLY A 52 UNP P03354 PRO 624 CONFLICT SEQADV 1CZ9 ASN A 64 UNP P03354 ASP 636 ENGINEERED MUTATION SEQADV 1CZ9 ALA A 101 UNP P03354 VAL 673 SEE REMARK 999 SEQADV 1CZ9 LYS A 166 UNP P03354 ARG 738 SEE REMARK 999 SEQADV 1CZ9 ASN A 208 UNP P03354 INSERTION SEQADV 1CZ9 LEU A 209 UNP P03354 INSERTION SEQRES 1 A 162 PRO LEU ARG GLU GLY ARG GLY LEU GLY PRO LEU GLN ILE SEQRES 2 A 162 TRP GLN THR ASN PHE THR LEU GLU PRO ARG MET ALA PRO SEQRES 3 A 162 ARG SER TRP LEU ALA VAL THR VAL ASP THR ALA SER SER SEQRES 4 A 162 ALA ILE VAL VAL THR GLN HIS GLY ARG VAL THR SER VAL SEQRES 5 A 162 ALA ALA GLN HIS HIS TRP ALA THR ALA ILE ALA VAL LEU SEQRES 6 A 162 GLY ARG PRO LYS ALA ILE LYS THR ASP ASN GLY SER CYS SEQRES 7 A 162 PHE THR SER LYS SER THR ARG GLU TRP LEU ALA ARG TRP SEQRES 8 A 162 GLY ILE ALA HIS THR THR GLY ILE PRO GLY ASN SER GLN SEQRES 9 A 162 GLY GLN ALA MET VAL GLU ARG ALA ASN ARG LEU LEU LYS SEQRES 10 A 162 ASP LYS ILE ARG VAL LEU ALA GLU GLY ASP GLY PHE MET SEQRES 11 A 162 LYS ARG ILE PRO THR SER LYS GLN GLY GLU LEU LEU ALA SEQRES 12 A 162 LYS ALA MET TYR ALA LEU ASN HIS PHE GLU ARG GLY GLU SEQRES 13 A 162 ASN THR LYS THR ASN LEU HET SO4 A 400 5 HET CIT A 399 13 HETNAM SO4 SULFATE ION HETNAM CIT CITRIC ACID FORMUL 2 SO4 O4 S 2- FORMUL 3 CIT C6 H8 O7 FORMUL 4 HOH *211(H2 O) HELIX 1 1 PRO A 69 ALA A 72 5 4 HELIX 2 2 THR A 97 GLY A 113 1 17 HELIX 3 3 GLY A 123 SER A 128 1 6 HELIX 4 4 SER A 128 GLY A 139 1 12 HELIX 5 5 ASN A 149 ASP A 174 1 26 HELIX 6 6 PRO A 181 SER A 183 5 3 HELIX 7 7 LYS A 184 ASN A 197 1 14 SHEET 1 A 5 ILE A 88 HIS A 93 0 SHEET 2 A 5 TRP A 76 ASP A 82 -1 N TRP A 76 O HIS A 93 SHEET 3 A 5 ILE A 60 LEU A 67 -1 O GLN A 62 N VAL A 81 SHEET 4 A 5 ALA A 117 ASP A 121 1 O ALA A 117 N TRP A 61 SHEET 5 A 5 ALA A 141 GLY A 145 1 O ALA A 141 N ILE A 118 CISPEP 1 ALA A 72 PRO A 73 0 5.57 SITE 1 AC1 5 VAL A 90 MET A 193 HOH A 466 HOH A 611 SITE 2 AC1 5 HOH A 694 SITE 1 AC2 9 ARG A 132 ALA A 136 ARG A 179 PRO A 181 SITE 2 AC2 9 THR A 182 SER A 183 HOH A 604 HOH A 621 SITE 3 AC2 9 HOH A 637 CRYST1 66.560 66.560 78.360 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012762 0.00000