HEADER CONTRACTILE PROTEIN 15-SEP-99 1D0Y TITLE DICTYOSTELIUM MYOSIN S1DC (MOTOR DOMAIN FRAGMENT) COMPLEXED WITH O- TITLE 2 NITROPHENYL AMINOETHYLDIPHOSPHATE BERYLLIUM FLUORIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN S1DC MOTOR DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S1DC MOTOR DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 44689 KEYWDS MYOSIN, MOTILITY, ACTIN-BINDING, MOTOR DOMAIN, NANOLOGS, CONTRACTILE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GULICK,C.B.BAUER,J.B.THODEN,E.PATE,R.G.YOUNT,I.RAYMENT REVDAT 6 07-FEB-24 1D0Y 1 REMARK REVDAT 5 03-NOV-21 1D0Y 1 REMARK SEQADV LINK REVDAT 4 31-JAN-18 1D0Y 1 REMARK REVDAT 3 24-FEB-09 1D0Y 1 VERSN REVDAT 2 20-DEC-00 1D0Y 1 REMARK REVDAT 1 12-JAN-00 1D0Y 0 JRNL AUTH A.M.GULICK,C.B.BAUER,J.B.THODEN,E.PATE,R.G.YOUNT,I.RAYMENT JRNL TITL X-RAY STRUCTURES OF THE DICTYOSTELIUM DISCOIDEUM MYOSIN JRNL TITL 2 MOTOR DOMAIN WITH SIX NON-NUCLEOTIDE ANALOGS. JRNL REF J.BIOL.CHEM. V. 275 398 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10617631 JRNL DOI 10.1074/JBC.275.1.398 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 3 NUMBER OF REFLECTIONS : 59396 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1780 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 59396 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 708 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.014 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.570 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000009697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59396 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.6 REMARK 200 DATA REDUNDANCY : 2.450 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8.3 % PEG 8000 125 MM NACL 3 MM DTT, REMARK 280 PH 7.0, MICROBATCH, TEMPERATURE 4.0K, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 51.90000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 90.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 90.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 204 REMARK 465 ALA A 205 REMARK 465 ASN A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 TRP A 501 REMARK 465 THR A 502 REMARK 465 PHE A 503 REMARK 465 ILE A 504 REMARK 465 ASP A 505 REMARK 465 PHE A 506 REMARK 465 GLY A 507 REMARK 465 LYS A 622 REMARK 465 LYS A 623 REMARK 465 GLY A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 PRO A 760 REMARK 465 ASN A 761 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 65 CG1 CG2 REMARK 470 ASP A 69 CG OD1 OD2 REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 SER A 321 OG REMARK 470 GLU A 322 CG CD OE1 OE2 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 GLN A 443 CG CD OE1 NE2 REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 500 CG OD1 ND2 REMARK 470 LEU A 508 CG CD1 CD2 REMARK 470 LYS A 670 CG CD CE NZ REMARK 470 LEU A 707 CG CD1 CD2 REMARK 470 PRO A 713 CG CD REMARK 470 ARG A 714 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 715 CG OD1 OD2 REMARK 470 ARG A 758 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 759 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1115 O HOH A 1708 2.02 REMARK 500 O HOH A 1045 O HOH A 1401 2.08 REMARK 500 OD2 ASP A 45 NH2 ARG A 677 2.09 REMARK 500 OE2 GLU A 99 O HOH A 1390 2.10 REMARK 500 O HOH A 1376 O HOH A 1682 2.11 REMARK 500 O HOH A 1268 O HOH A 1647 2.12 REMARK 500 ND2 ASN A 249 O HOH A 1255 2.14 REMARK 500 O HOH A 1042 O HOH A 1659 2.17 REMARK 500 O GLU A 735 NH2 ARG A 738 2.19 REMARK 500 O HOH A 1496 O HOH A 1501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 51 CD GLU A 51 OE2 0.081 REMARK 500 GLU A 55 CD GLU A 55 OE2 0.074 REMARK 500 GLU A 89 CD GLU A 89 OE2 0.091 REMARK 500 GLU A 212 CD GLU A 212 OE2 0.067 REMARK 500 GLU A 244 CD GLU A 244 OE2 0.066 REMARK 500 GLU A 275 CD GLU A 275 OE2 0.078 REMARK 500 GLU A 291 CD GLU A 291 OE2 0.077 REMARK 500 GLU A 302 CD GLU A 302 OE2 0.071 REMARK 500 GLU A 360 CD GLU A 360 OE2 0.072 REMARK 500 GLU A 390 CD GLU A 390 OE2 0.082 REMARK 500 GLU A 395 CD GLU A 395 OE2 0.068 REMARK 500 GLU A 412 CD GLU A 412 OE2 0.079 REMARK 500 GLU A 444 CD GLU A 444 OE2 0.074 REMARK 500 GLU A 492 CD GLU A 492 OE2 0.071 REMARK 500 GLU A 531 CD GLU A 531 OE2 0.098 REMARK 500 GLU A 567 CD GLU A 567 OE2 0.073 REMARK 500 GLU A 646 CD GLU A 646 OE2 0.069 REMARK 500 GLU A 668 CD GLU A 668 OE2 0.099 REMARK 500 GLU A 683 CD GLU A 683 OE2 0.079 REMARK 500 GLU A 717 CD GLU A 717 OE2 0.071 REMARK 500 GLU A 735 CD GLU A 735 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 6 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 23 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 23 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP A 31 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 76 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 131 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 135 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ALA A 157 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP A 168 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 168 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 169 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 267 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 276 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 314 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 314 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 328 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 332 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 332 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 371 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 371 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 419 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 419 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ILE A 455 CA - CB - CG2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 515 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 520 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 590 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 602 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 620 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 620 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR A 634 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 669 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 677 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 689 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 700 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 56 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 3 -33.89 -39.44 REMARK 500 PRO A 39 0.46 -52.09 REMARK 500 ASP A 40 104.94 178.98 REMARK 500 PRO A 41 27.02 -59.50 REMARK 500 ARG A 44 17.39 -142.38 REMARK 500 SER A 54 166.71 179.04 REMARK 500 SER A 57 -18.62 -49.44 REMARK 500 LEU A 97 49.37 -109.96 REMARK 500 THR A 274 -14.24 81.18 REMARK 500 ALA A 290 -33.55 -35.41 REMARK 500 LYS A 361 -132.05 -109.48 REMARK 500 ALA A 363 -37.42 -19.77 REMARK 500 ALA A 400 53.62 -96.82 REMARK 500 ASN A 410 -176.62 -68.78 REMARK 500 GLU A 412 -70.91 -55.54 REMARK 500 ARG A 445 65.13 -108.30 REMARK 500 SER A 465 -163.45 -121.69 REMARK 500 LYS A 498 71.33 71.18 REMARK 500 ASN A 711 -62.69 -179.65 REMARK 500 ASP A 715 61.06 -101.53 REMARK 500 THR A 742 -17.04 -143.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 45 -10.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 186 OG1 REMARK 620 2 SER A 237 OG 92.6 REMARK 620 3 ONP A 999 F2 174.0 84.9 REMARK 620 4 ONP A 999 OB2 88.3 172.0 93.4 REMARK 620 5 HOH A1023 O 82.5 86.2 92.0 86.0 REMARK 620 6 HOH A1688 O 91.6 84.4 93.5 103.6 168.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ONP A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MMD RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS ADP-BEFX REMARK 900 RELATED ID: 1MMN RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS AMPPNP REMARK 900 RELATED ID: 1D0X RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS M-NITROPHENYL AMINOETHYLDIPHOSPHATE REMARK 900 BERYLLIUM TRIFLUORIDE REMARK 900 RELATED ID: 1D0Y RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS O-NITROPHENYL AMINOETHYLDIPHOSPHATE REMARK 900 BERYLLIUM TRIFLUORIDE REMARK 900 RELATED ID: 1D0Z RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS P-NITROPHENYL AMINOETHYLDIPHOSPHATE REMARK 900 BERYLLIUM TRIFLUORIDE REMARK 900 RELATED ID: 1D1A RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS O,P-DINITROPHENYL AMINOETHYLDIPHOSPHATE REMARK 900 BERYLLIUM TRIFLUORIDE REMARK 900 RELATED ID: 1D1B RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS O,P-DINITROPHENYL AMINOPROPYLDIPHOSPHATE REMARK 900 BERYLLIUM TRIFLUORIDE REMARK 900 RELATED ID: 1D1C RELATED DB: PDB REMARK 900 S1DC MYOSIN FRAGMENT PLUS N-METHYL-O-NITROPHENYL REMARK 900 AMINOETHYLDIPHOSPHATE BERYLLIUM TRIFLUORIDE DBREF 1D0Y A 1 761 UNP P08799 MYS2_DICDI 1 761 SEQADV 1D0Y CYS A 312 UNP P08799 TYR 312 SEE REMARK 999 SEQADV 1D0Y PRO A 760 UNP P08799 GLN 760 ENGINEERED MUTATION SEQADV 1D0Y ASN A 761 UNP P08799 ARG 761 ENGINEERED MUTATION SEQRES 1 A 761 MET ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS SEQRES 2 A 761 TYR LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS SEQRES 3 A 761 LEU THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO SEQRES 4 A 761 ASP PRO LYS GLU ARG ASP SER TYR GLU CYS GLY GLU ILE SEQRES 5 A 761 VAL SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL SEQRES 6 A 761 ASP GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN SEQRES 7 A 761 GLN ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SEQRES 8 A 761 SER GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS SEQRES 9 A 761 ASN LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR SEQRES 10 A 761 TYR SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS SEQRES 11 A 761 ARG ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE SEQRES 12 A 761 LYS GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE SEQRES 13 A 761 ALA ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP SEQRES 14 A 761 ARG GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY SEQRES 15 A 761 ALA GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR SEQRES 16 A 761 LEU ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER SEQRES 17 A 761 GLY VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE SEQRES 18 A 761 LEU GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN SEQRES 19 A 761 ASN SER SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE SEQRES 20 A 761 ASN ASN ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER SEQRES 21 A 761 TYR LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU SEQRES 22 A 761 THR GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA SEQRES 23 A 761 GLY ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA SEQRES 24 A 761 GLY PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS SEQRES 25 A 761 VAL ASP ILE LYS GLY VAL SER ASP SER GLU GLU PHE LYS SEQRES 26 A 761 ILE THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN SEQRES 27 A 761 GLU GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE SEQRES 28 A 761 LEU HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY SEQRES 29 A 761 GLU GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA SEQRES 30 A 761 ALA SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU SEQRES 31 A 761 LYS ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP SEQRES 32 A 761 LEU VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SEQRES 33 A 761 SER ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU SEQRES 34 A 761 PHE LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS SEQRES 35 A 761 GLN GLU ARG LYS ALA TYR PHE ILE GLY VAL LEU ASP ILE SEQRES 36 A 761 SER GLY PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN SEQRES 37 A 761 LEU CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE SEQRES 38 A 761 PHE ASN HIS HIS MET PHE LYS LEU GLU GLN GLU GLU TYR SEQRES 39 A 761 LEU LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY SEQRES 40 A 761 LEU ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG SEQRES 41 A 761 GLN PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER SEQRES 42 A 761 VAL PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS SEQRES 43 A 761 LEU HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU SEQRES 44 A 761 GLU PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS SEQRES 45 A 761 TYR ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU SEQRES 46 A 761 GLU LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU SEQRES 47 A 761 CYS PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU SEQRES 48 A 761 PHE ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY SEQRES 49 A 761 ALA ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN SEQRES 50 A 761 LEU ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO SEQRES 51 A 761 HIS PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU SEQRES 52 A 761 PRO ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU SEQRES 53 A 761 ARG CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG SEQRES 54 A 761 LYS GLY PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL SEQRES 55 A 761 LYS ARG TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP SEQRES 56 A 761 ALA GLU ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS SEQRES 57 A 761 HIS LEU ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE SEQRES 58 A 761 THR LYS ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE SEQRES 59 A 761 GLU GLU ALA ARG GLU PRO ASN HET MG A 998 1 HET ONP A 999 25 HETNAM MG MAGNESIUM ION HETNAM ONP O-NITROPHENYL AMINOETHYLDIPHOSPHATE BERYLLIUM HETNAM 2 ONP TRIFLUORIDE FORMUL 2 MG MG 2+ FORMUL 3 ONP C8 H11 BE F3 N2 O9 P2 1- FORMUL 4 HOH *708(H2 O) HELIX 1 1 SER A 9 LYS A 16 1 8 HELIX 2 2 PHE A 25 VAL A 29 5 5 HELIX 3 3 ASP A 75 ALA A 77 5 3 HELIX 4 4 PRO A 82 ASP A 86 5 5 HELIX 5 5 MET A 91 LEU A 94 5 4 HELIX 6 6 ASN A 98 ASN A 111 1 14 HELIX 7 7 THR A 136 LYS A 144 1 9 HELIX 8 8 ARG A 147 VAL A 151 5 5 HELIX 9 9 HIS A 154 ARG A 170 1 17 HELIX 10 10 GLY A 184 GLY A 201 1 18 HELIX 11 11 GLY A 209 GLY A 226 1 18 HELIX 12 12 GLU A 264 VAL A 269 5 6 HELIX 13 13 TYR A 278 ALA A 288 1 11 HELIX 14 14 THR A 289 ALA A 295 1 7 HELIX 15 15 GLY A 300 PHE A 304 5 5 HELIX 16 16 SER A 319 GLY A 335 1 17 HELIX 17 17 SER A 337 ASN A 356 1 20 HELIX 18 18 LYS A 372 GLY A 383 1 12 HELIX 19 19 ASN A 385 GLU A 395 1 11 HELIX 20 20 ASN A 410 CYS A 442 1 33 HELIX 21 21 SER A 465 LYS A 498 1 34 HELIX 22 22 ASP A 509 GLY A 519 1 11 HELIX 23 23 GLY A 524 VAL A 534 1 11 HELIX 24 24 THR A 539 SER A 552 1 14 HELIX 25 25 ASP A 583 ASP A 590 1 8 HELIX 26 26 GLN A 593 ASP A 602 1 10 HELIX 27 27 VAL A 607 ASP A 614 1 8 HELIX 28 28 ASP A 614 SER A 619 1 6 HELIX 29 29 THR A 629 THR A 647 1 19 HELIX 30 30 GLU A 668 ASN A 679 1 12 HELIX 31 31 GLY A 680 GLY A 691 1 12 HELIX 32 32 TYR A 698 TYR A 706 1 9 HELIX 33 33 LEU A 707 ALA A 709 5 3 HELIX 34 34 ASP A 718 ASN A 731 1 14 HELIX 35 35 ASP A 733 GLU A 735 5 3 HELIX 36 36 GLY A 749 GLU A 756 1 8 SHEET 1 A 5 ARG A 70 LYS A 73 0 SHEET 2 A 5 SER A 59 PHE A 62 -1 N PHE A 60 O VAL A 72 SHEET 3 A 5 GLU A 48 THR A 56 -1 N VAL A 53 O THR A 61 SHEET 4 A 5 TYR A 34 TYR A 37 -1 N ILE A 35 O GLY A 50 SHEET 5 A 5 ASN A 78 GLN A 79 -1 O ASN A 78 N TRP A 36 SHEET 1 B 7 TYR A 116 SER A 119 0 SHEET 2 B 7 PHE A 122 VAL A 126 -1 O PHE A 122 N SER A 119 SHEET 3 B 7 ASN A 649 ILE A 656 1 O PHE A 652 N LEU A 123 SHEET 4 B 7 GLN A 173 THR A 178 1 O SER A 174 N HIS A 651 SHEET 5 B 7 TYR A 448 ASP A 454 1 O PHE A 449 N GLN A 173 SHEET 6 B 7 GLY A 240 PHE A 247 -1 O LYS A 241 N ASP A 454 SHEET 7 B 7 ILE A 253 TYR A 261 -1 N SER A 254 O GLN A 246 SHEET 1 C 2 ASN A 227 ALA A 228 0 SHEET 2 C 2 SER A 236 SER A 237 -1 O SER A 236 N ALA A 228 SHEET 1 D 2 ARG A 397 ALA A 400 0 SHEET 2 D 2 ASP A 403 ALA A 406 -1 O ASP A 403 N ALA A 400 SHEET 1 E 3 TYR A 558 GLU A 559 0 SHEET 2 E 3 GLU A 567 HIS A 572 -1 N GLY A 569 O GLU A 559 SHEET 3 E 3 GLY A 575 GLU A 580 -1 O GLY A 575 N HIS A 572 SHEET 1 F 3 ASN A 694 ILE A 697 0 SHEET 2 F 3 LYS A 743 PHE A 746 -1 N ILE A 744 O ILE A 696 SHEET 3 F 3 TYR A 737 PHE A 739 -1 N ARG A 738 O PHE A 745 LINK OG1 THR A 186 MG MG A 998 1555 1555 2.01 LINK OG SER A 237 MG MG A 998 1555 1555 2.03 LINK MG MG A 998 F2 ONP A 999 1555 1555 2.04 LINK MG MG A 998 OB2 ONP A 999 1555 1555 1.94 LINK MG MG A 998 O HOH A1023 1555 1555 2.16 LINK MG MG A 998 O HOH A1688 1555 1555 1.91 CISPEP 1 GLN A 521 PRO A 522 0 -1.33 SITE 1 AC1 5 THR A 186 SER A 237 ONP A 999 HOH A1023 SITE 2 AC1 5 HOH A1688 SITE 1 AC2 23 ASN A 127 PRO A 128 PHE A 129 LYS A 130 SITE 2 AC2 23 ARG A 131 GLU A 180 SER A 181 GLY A 182 SITE 3 AC2 23 ALA A 183 GLY A 184 LYS A 185 THR A 186 SITE 4 AC2 23 GLU A 187 ASN A 233 SER A 236 SER A 237 SITE 5 AC2 23 MG A 998 HOH A1023 HOH A1142 HOH A1154 SITE 6 AC2 23 HOH A1504 HOH A1688 HOH A1708 CRYST1 103.800 180.300 54.000 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005546 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018519 0.00000