data_1D12
# 
_entry.id   1D12 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.385 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1D12         pdb_00001d12 10.2210/pdb1d12/pdb 
RCSB  DDF019       ?            ?                   
WWPDB D_1000172617 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1990-10-15 
2 'Structure model' 1 1 2008-05-22 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom 
2 4 'Structure model' chem_comp_bond 
3 4 'Structure model' database_2     
4 4 'Structure model' struct_site    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1 4 'Structure model' '_database_2.pdbx_DOI'                
2 4 'Structure model' '_database_2.pdbx_database_accession' 
3 4 'Structure model' '_struct_site.pdbx_auth_asym_id'      
4 4 'Structure model' '_struct_site.pdbx_auth_comp_id'      
5 4 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1D12 
_pdbx_database_status.recvd_initial_deposition_date   1989-10-20 
_pdbx_database_status.deposit_site                    BNL 
_pdbx_database_status.process_site                    BNL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Frederick, C.A.'     1 
'Williams, L.D.'      2 
'Ughetto, G.'         3 
'Van Der Marel, G.A.' 4 
'Van Boom, J.H.'      5 
'Rich, A.'            6 
'Wang, A.H.-J.'       7 
# 
_citation.id                        primary 
_citation.title                     'Structural comparison of anticancer drug-DNA complexes: adriamycin and daunomycin.' 
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            29 
_citation.page_first                2538 
_citation.page_last                 2549 
_citation.year                      1990 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   2334681 
_citation.pdbx_database_id_DOI      10.1021/bi00462a016 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Frederick, C.A.'     1 ? 
primary 'Williams, L.D.'      2 ? 
primary 'Ughetto, G.'         3 ? 
primary 'van der Marel, G.A.' 4 ? 
primary 'van Boom, J.H.'      5 ? 
primary 'Rich, A.'            6 ? 
primary 'Wang, A.H.'          7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
;
1809.217 1  ? ? ? ? 
2 non-polymer syn DOXORUBICIN                        543.519  1  ? ? ? ? 
3 non-polymer syn SPERMINE                           202.340  1  ? ? ? ? 
4 non-polymer syn 'SODIUM ION'                       22.990   1  ? ? ? ? 
5 water       nat water                              18.015   56 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DA)(DT)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGATCG 
_entity_poly.pdbx_strand_id                 A 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 DOXORUBICIN  DM2 
3 SPERMINE     SPM 
4 'SODIUM ION' NA  
5 water        HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1 DC n 
1 2 DG n 
1 3 DA n 
1 4 DT n 
1 5 DC n 
1 6 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ?          'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ?          'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ?          'C10 H14 N5 O7 P' 347.221 
DM2 non-polymer   . DOXORUBICIN                          ADRIAMYCIN 'C27 H29 N O11'   543.519 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ?          'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ?          'H2 O'            18.015  
NA  non-polymer   . 'SODIUM ION'                         ?          'Na 1'            22.990  
SPM non-polymer   . SPERMINE                             ?          'C10 H26 N4'      202.340 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1 DC 1 1 1 DC C A . n 
A 1 2 DG 2 2 2 DG G A . n 
A 1 3 DA 3 3 3 DA A A . n 
A 1 4 DT 4 4 4 DT T A . n 
A 1 5 DC 5 5 5 DC C A . n 
A 1 6 DG 6 6 6 DG G A . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
B 2 DM2 1  7  7  DM2 DM2 A . 
C 3 SPM 1  8  8  SPM SPM A . 
D 4 NA  1  9  9  NA  NA  A . 
E 5 HOH 1  10 10 HOH HOH A . 
E 5 HOH 2  11 11 HOH HOH A . 
E 5 HOH 3  12 12 HOH HOH A . 
E 5 HOH 4  13 13 HOH HOH A . 
E 5 HOH 5  14 14 HOH HOH A . 
E 5 HOH 6  15 15 HOH HOH A . 
E 5 HOH 7  16 16 HOH HOH A . 
E 5 HOH 8  17 17 HOH HOH A . 
E 5 HOH 9  18 18 HOH HOH A . 
E 5 HOH 10 19 19 HOH HOH A . 
E 5 HOH 11 20 20 HOH HOH A . 
E 5 HOH 12 21 21 HOH HOH A . 
E 5 HOH 13 22 22 HOH HOH A . 
E 5 HOH 14 23 23 HOH HOH A . 
E 5 HOH 15 24 24 HOH HOH A . 
E 5 HOH 16 25 25 HOH HOH A . 
E 5 HOH 17 26 26 HOH HOH A . 
E 5 HOH 18 27 27 HOH HOH A . 
E 5 HOH 19 28 28 HOH HOH A . 
E 5 HOH 20 29 29 HOH HOH A . 
E 5 HOH 21 30 30 HOH HOH A . 
E 5 HOH 22 31 31 HOH HOH A . 
E 5 HOH 23 32 32 HOH HOH A . 
E 5 HOH 24 33 33 HOH HOH A . 
E 5 HOH 25 34 34 HOH HOH A . 
E 5 HOH 26 35 35 HOH HOH A . 
E 5 HOH 27 36 36 HOH HOH A . 
E 5 HOH 28 37 37 HOH HOH A . 
E 5 HOH 29 38 38 HOH HOH A . 
E 5 HOH 30 39 39 HOH HOH A . 
E 5 HOH 31 40 40 HOH HOH A . 
E 5 HOH 32 41 41 HOH HOH A . 
E 5 HOH 33 42 42 HOH HOH A . 
E 5 HOH 34 43 43 HOH HOH A . 
E 5 HOH 35 44 44 HOH HOH A . 
E 5 HOH 36 45 45 HOH HOH A . 
E 5 HOH 37 46 46 HOH HOH A . 
E 5 HOH 38 47 47 HOH HOH A . 
E 5 HOH 39 48 48 HOH HOH A . 
E 5 HOH 40 49 49 HOH HOH A . 
E 5 HOH 41 50 50 HOH HOH A . 
E 5 HOH 42 51 51 HOH HOH A . 
E 5 HOH 43 52 52 HOH HOH A . 
E 5 HOH 44 53 53 HOH HOH A . 
E 5 HOH 45 54 54 HOH HOH A . 
E 5 HOH 46 55 55 HOH HOH A . 
E 5 HOH 47 56 56 HOH HOH A . 
E 5 HOH 48 57 57 HOH HOH A . 
E 5 HOH 49 58 58 HOH HOH A . 
E 5 HOH 50 59 59 HOH HOH A . 
E 5 HOH 51 60 60 HOH HOH A . 
E 5 HOH 52 61 61 HOH HOH A . 
E 5 HOH 53 62 62 HOH HOH A . 
E 5 HOH 54 63 63 HOH HOH A . 
E 5 HOH 55 64 64 HOH HOH A . 
E 5 HOH 56 65 65 HOH HOH A . 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           1D12 
_cell.length_a           28.210 
_cell.length_b           28.210 
_cell.length_c           53.190 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1D12 
_symmetry.space_group_name_H-M             'P 41 21 2' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                92 
# 
_exptl.entry_id          1D12 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.92 
_exptl_crystal.density_percent_sol   57.94 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    'ROOM TEMPERATURE' 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    'VAPOR DIFFUSION' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER           ? ? ? 
1 2 1 MPD             ? ? ? 
1 3 1 'NA CACODYLATE' ? ? ? 
1 4 1 MGCL2           ? ? ? 
1 5 1 SPERMINE        ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           288.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   ? 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   ? 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             ? 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      ? 
_diffrn_source.type                        ? 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1D12 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   2.000 
_reflns.d_resolution_low             ? 
_reflns.d_resolution_high            1.700 
_reflns.number_obs                   ? 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1D12 
_refine.ls_number_reflns_obs                     1706 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.000 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.000 
_refine.ls_d_res_high                            1.700 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1770000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   120 
_refine_hist.pdbx_number_atoms_ligand         54 
_refine_hist.number_atoms_solvent             56 
_refine_hist.number_atoms_total               230 
_refine_hist.d_res_high                       1.700 
_refine_hist.d_res_low                        10.000 
# 
_database_PDB_matrix.entry_id          1D12 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1D12 
_struct.title                     'STRUCTURAL COMPARISON OF ANTICANCER DRUG-DNA COMPLEXES. ADRIAMYCIN AND DAUNOMYCIN' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1D12 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 4 ? 
E N N 5 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1D12 
_struct_ref.pdbx_db_accession          1D12 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
_struct_ref_seq.align_id                      1 
_struct_ref_seq.ref_id                        1 
_struct_ref_seq.pdbx_PDB_id_code              1D12 
_struct_ref_seq.pdbx_strand_id                A 
_struct_ref_seq.seq_align_beg                 1 
_struct_ref_seq.pdbx_seq_align_beg_ins_code   ? 
_struct_ref_seq.seq_align_end                 6 
_struct_ref_seq.pdbx_seq_align_end_ins_code   ? 
_struct_ref_seq.pdbx_db_accession             1D12 
_struct_ref_seq.db_align_beg                  1 
_struct_ref_seq.pdbx_db_align_beg_ins_code    ? 
_struct_ref_seq.db_align_end                  6 
_struct_ref_seq.pdbx_db_align_end_ins_code    ? 
_struct_ref_seq.pdbx_auth_seq_align_beg       1 
_struct_ref_seq.pdbx_auth_seq_align_end       6 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1,2 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E 
# 
loop_
_pdbx_struct_oper_list.id 
_pdbx_struct_oper_list.type 
_pdbx_struct_oper_list.name 
_pdbx_struct_oper_list.symmetry_operation 
_pdbx_struct_oper_list.matrix[1][1] 
_pdbx_struct_oper_list.matrix[1][2] 
_pdbx_struct_oper_list.matrix[1][3] 
_pdbx_struct_oper_list.vector[1] 
_pdbx_struct_oper_list.matrix[2][1] 
_pdbx_struct_oper_list.matrix[2][2] 
_pdbx_struct_oper_list.matrix[2][3] 
_pdbx_struct_oper_list.vector[2] 
_pdbx_struct_oper_list.matrix[3][1] 
_pdbx_struct_oper_list.matrix[3][2] 
_pdbx_struct_oper_list.matrix[3][3] 
_pdbx_struct_oper_list.vector[3] 
1 'identity operation'         1_555 x,y,z            1.0000000000 0.0000000000  0.0000000000 0.0000000000  0.0000000000  
1.0000000000 0.0000000000 0.0000000000  0.0000000000 0.0000000000 1.0000000000  0.0000000000  
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.2100000000 -1.0000000000 
0.0000000000 0.0000000000 28.2100000000 0.0000000000 0.0000000000 -1.0000000000 26.5950000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DG 6 N7 ? ? ? 1_555 D NA  . NA ? ? A DG 6 A NA  9  1_555 ? ? ? ? ? ? ?            2.781 ? ? 
metalc2  metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O  ? ? A NA 9 A HOH 11 1_555 ? ? ? ? ? ? ?            2.822 ? ? 
hydrog1  hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG  6 N1 ? ? A DC 1 A DG  6  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG  6 O6 ? ? A DC 1 A DG  6  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG  6 N2 ? ? A DC 1 A DG  6  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC  5 N3 ? ? A DG 2 A DC  5  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC  5 O2 ? ? A DG 2 A DC  5  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC  5 N4 ? ? A DG 2 A DC  5  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT  4 N3 ? ? A DA 3 A DT  4  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT  4 O4 ? ? A DA 3 A DT  4  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA  3 N1 ? ? A DT 4 A DA  3  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA  3 N6 ? ? A DT 4 A DA  3  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG  2 N1 ? ? A DC 5 A DG  2  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG  2 O6 ? ? A DC 5 A DG  2  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG  2 N2 ? ? A DC 5 A DG  2  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC  1 N3 ? ? A DG 6 A DC  1  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC  1 O2 ? ? A DG 6 A DC  1  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC  1 N4 ? ? A DG 6 A DC  1  8_665 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
_pdbx_struct_conn_angle.id                    1 
_pdbx_struct_conn_angle.ptnr1_label_atom_id   N7 
_pdbx_struct_conn_angle.ptnr1_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr1_label_asym_id   A 
_pdbx_struct_conn_angle.ptnr1_label_comp_id   DG 
_pdbx_struct_conn_angle.ptnr1_label_seq_id    6 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id    DG 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id     6 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr1_symmetry        1_555 
_pdbx_struct_conn_angle.ptnr2_label_atom_id   NA 
_pdbx_struct_conn_angle.ptnr2_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr2_label_asym_id   D 
_pdbx_struct_conn_angle.ptnr2_label_comp_id   NA 
_pdbx_struct_conn_angle.ptnr2_label_seq_id    . 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id    NA 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id     9 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr2_symmetry        1_555 
_pdbx_struct_conn_angle.ptnr3_label_atom_id   O 
_pdbx_struct_conn_angle.ptnr3_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr3_label_asym_id   E 
_pdbx_struct_conn_angle.ptnr3_label_comp_id   HOH 
_pdbx_struct_conn_angle.ptnr3_label_seq_id    . 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id    HOH 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id     11 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr3_symmetry        1_555 
_pdbx_struct_conn_angle.value                 93.4 
_pdbx_struct_conn_angle.value_esd             ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A DM2 7 ? 12 'BINDING SITE FOR RESIDUE DM2 A 7' 
AC2 Software A SPM 8 ? 12 'BINDING SITE FOR RESIDUE SPM A 8' 
AC3 Software A NA  9 ? 5  'BINDING SITE FOR RESIDUE NA A 9'  
1   ?        ? ?   ? ? ?  ?                                  
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 12 DC  A 1 ? DC  A 1  . ? 8_665 ? 
2  AC1 12 DG  A 2 ? DG  A 2  . ? 8_665 ? 
3  AC1 12 DA  A 3 ? DA  A 3  . ? 8_665 ? 
4  AC1 12 DT  A 4 ? DT  A 4  . ? 1_555 ? 
5  AC1 12 DC  A 5 ? DC  A 5  . ? 1_555 ? 
6  AC1 12 DG  A 6 ? DG  A 6  . ? 1_555 ? 
7  AC1 12 SPM C . ? SPM A 8  . ? 1_555 ? 
8  AC1 12 NA  D . ? NA  A 9  . ? 1_555 ? 
9  AC1 12 HOH E . ? HOH A 22 . ? 1_555 ? 
10 AC1 12 HOH E . ? HOH A 26 . ? 1_555 ? 
11 AC1 12 HOH E . ? HOH A 41 . ? 1_555 ? 
12 AC1 12 HOH E . ? HOH A 43 . ? 1_555 ? 
13 AC2 12 DG  A 2 ? DG  A 2  . ? 8_665 ? 
14 AC2 12 DT  A 4 ? DT  A 4  . ? 1_555 ? 
15 AC2 12 DC  A 5 ? DC  A 5  . ? 1_555 ? 
16 AC2 12 DM2 B . ? DM2 A 7  . ? 1_555 ? 
17 AC2 12 HOH E . ? HOH A 14 . ? 1_555 ? 
18 AC2 12 HOH E . ? HOH A 15 . ? 1_555 ? 
19 AC2 12 HOH E . ? HOH A 17 . ? 5_655 ? 
20 AC2 12 HOH E . ? HOH A 27 . ? 8_665 ? 
21 AC2 12 HOH E . ? HOH A 32 . ? 1_555 ? 
22 AC2 12 HOH E . ? HOH A 39 . ? 5_555 ? 
23 AC2 12 HOH E . ? HOH A 48 . ? 1_555 ? 
24 AC2 12 HOH E . ? HOH A 61 . ? 5_655 ? 
25 AC3 5  DG  A 6 ? DG  A 6  . ? 1_555 ? 
26 AC3 5  DM2 B . ? DM2 A 7  . ? 1_555 ? 
27 AC3 5  HOH E . ? HOH A 10 . ? 1_555 ? 
28 AC3 5  HOH E . ? HOH A 11 . ? 1_555 ? 
29 AC3 5  HOH E . ? HOH A 12 . ? 1_555 ? 
# 
_pdbx_validate_symm_contact.id                1 
_pdbx_validate_symm_contact.PDB_model_num     1 
_pdbx_validate_symm_contact.auth_atom_id_1    O 
_pdbx_validate_symm_contact.auth_asym_id_1    A 
_pdbx_validate_symm_contact.auth_comp_id_1    HOH 
_pdbx_validate_symm_contact.auth_seq_id_1     45 
_pdbx_validate_symm_contact.PDB_ins_code_1    ? 
_pdbx_validate_symm_contact.label_alt_id_1    ? 
_pdbx_validate_symm_contact.site_symmetry_1   1_555 
_pdbx_validate_symm_contact.auth_atom_id_2    O 
_pdbx_validate_symm_contact.auth_asym_id_2    A 
_pdbx_validate_symm_contact.auth_comp_id_2    HOH 
_pdbx_validate_symm_contact.auth_seq_id_2     46 
_pdbx_validate_symm_contact.PDB_ins_code_2    ? 
_pdbx_validate_symm_contact.label_alt_id_2    ? 
_pdbx_validate_symm_contact.site_symmetry_2   2_664 
_pdbx_validate_symm_contact.dist              2.11 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 1.601 1.519 0.082  0.010 N 
2  1 "O3'" A DC 1 ? ? "C3'" A DC 1 ? ? 1.364 1.419 -0.055 0.006 N 
3  1 P     A DG 2 ? ? OP2   A DG 2 ? ? 1.368 1.485 -0.117 0.017 N 
4  1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.572 1.512 0.060  0.007 N 
5  1 "C1'" A DG 2 ? ? N9    A DG 2 ? ? 1.374 1.468 -0.094 0.014 N 
6  1 C6    A DG 2 ? ? N1    A DG 2 ? ? 1.331 1.391 -0.060 0.007 N 
7  1 C8    A DG 2 ? ? N9    A DG 2 ? ? 1.309 1.374 -0.065 0.007 N 
8  1 C2    A DG 2 ? ? N2    A DG 2 ? ? 1.259 1.341 -0.082 0.010 N 
9  1 "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 1.563 1.512 0.051  0.007 N 
10 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? 1.513 1.420 0.093  0.011 N 
11 1 P     A DC 5 ? ? "O5'" A DC 5 ? ? 1.680 1.593 0.087  0.010 N 
12 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.582 1.519 0.063  0.010 N 
13 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.303 1.418 -0.115 0.012 N 
14 1 "O3'" A DC 5 ? ? "C3'" A DC 5 ? ? 1.367 1.419 -0.052 0.006 N 
15 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.587 1.512 0.075  0.007 N 
16 1 C6    A DG 6 ? ? N1    A DG 6 ? ? 1.343 1.391 -0.048 0.007 N 
17 1 C2    A DG 6 ? ? N2    A DG 6 ? ? 1.211 1.341 -0.130 0.010 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 117.02 110.30 6.72   0.70 N 
2  1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1    A DC 1 ? ? 112.14 108.30 3.84   0.30 N 
3  1 N1    A DC 1 ? ? C2    A DC 1 ? ? N3    A DC 1 ? ? 114.85 119.20 -4.35  0.70 N 
4  1 C2    A DC 1 ? ? N3    A DC 1 ? ? C4    A DC 1 ? ? 128.48 119.90 8.58   0.50 N 
5  1 N3    A DC 1 ? ? C4    A DC 1 ? ? C5    A DC 1 ? ? 113.85 121.90 -8.05  0.40 N 
6  1 C5    A DC 1 ? ? C6    A DC 1 ? ? N1    A DC 1 ? ? 124.31 121.00 3.31   0.50 N 
7  1 N1    A DC 1 ? ? C2    A DC 1 ? ? O2    A DC 1 ? ? 123.08 118.90 4.18   0.60 N 
8  1 C5    A DC 1 ? ? C4    A DC 1 ? ? N4    A DC 1 ? ? 125.22 120.20 5.02   0.70 N 
9  1 OP1   A DG 2 ? ? P     A DG 2 ? ? OP2   A DG 2 ? ? 132.82 119.60 13.22  1.50 N 
10 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.62 109.40 -7.78  0.80 N 
11 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.05  102.40 -5.35  0.80 N 
12 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9    A DG 2 ? ? 114.58 108.30 6.28   0.30 N 
13 1 C6    A DG 2 ? ? N1    A DG 2 ? ? C2    A DG 2 ? ? 117.83 125.10 -7.27  0.60 N 
14 1 N1    A DG 2 ? ? C2    A DG 2 ? ? N3    A DG 2 ? ? 131.49 123.90 7.59   0.60 N 
15 1 C2    A DG 2 ? ? N3    A DG 2 ? ? C4    A DG 2 ? ? 108.60 111.90 -3.30  0.50 N 
16 1 C5    A DG 2 ? ? C6    A DG 2 ? ? N1    A DG 2 ? ? 117.16 111.50 5.66   0.50 N 
17 1 N3    A DG 2 ? ? C2    A DG 2 ? ? N2    A DG 2 ? ? 112.11 119.90 -7.79  0.70 N 
18 1 N1    A DG 2 ? ? C6    A DG 2 ? ? O6    A DG 2 ? ? 114.86 119.90 -5.04  0.60 N 
19 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P     A DA 3 ? ? 131.43 119.70 11.73  1.20 Y 
20 1 "O3'" A DG 2 ? ? P     A DA 3 ? ? "O5'" A DA 3 ? ? 117.15 104.00 13.15  1.90 Y 
21 1 "O5'" A DA 3 ? ? P     A DA 3 ? ? OP1   A DA 3 ? ? 96.41  105.70 -9.29  0.90 N 
22 1 "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? "C3'" A DA 3 ? ? 123.25 115.70 7.55   1.20 N 
23 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9    A DA 3 ? ? 110.29 108.30 1.99   0.30 N 
24 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 103.82 109.40 -5.58  0.80 N 
25 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1    A DT 4 ? ? 100.61 108.00 -7.39  0.70 N 
26 1 C4    A DT 4 ? ? C5    A DT 4 ? ? C7    A DT 4 ? ? 126.41 119.00 7.41   0.60 N 
27 1 C6    A DT 4 ? ? C5    A DT 4 ? ? C7    A DT 4 ? ? 115.55 122.90 -7.35  0.60 N 
28 1 P     A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 110.64 120.90 -10.26 1.60 N 
29 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1    A DC 5 ? ? 123.37 108.30 15.07  0.30 N 
30 1 C2    A DC 5 ? ? N3    A DC 5 ? ? C4    A DC 5 ? ? 124.14 119.90 4.24   0.50 N 
31 1 N3    A DC 5 ? ? C4    A DC 5 ? ? C5    A DC 5 ? ? 117.69 121.90 -4.21  0.40 N 
32 1 C5    A DC 5 ? ? C6    A DC 5 ? ? N1    A DC 5 ? ? 125.28 121.00 4.28   0.50 N 
33 1 N1    A DC 5 ? ? C2    A DC 5 ? ? O2    A DC 5 ? ? 122.54 118.90 3.64   0.60 N 
34 1 C6    A DC 5 ? ? N1    A DC 5 ? ? "C1'" A DC 5 ? ? 128.83 120.80 8.03   1.20 N 
35 1 C2    A DC 5 ? ? N1    A DC 5 ? ? "C1'" A DC 5 ? ? 111.03 118.80 -7.77  1.10 N 
36 1 "O5'" A DG 6 ? ? P     A DG 6 ? ? OP1   A DG 6 ? ? 99.10  105.70 -6.60  0.90 N 
37 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 103.25 109.40 -6.15  0.80 N 
38 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9    A DG 6 ? ? 102.12 108.00 -5.88  0.70 N 
39 1 C6    A DG 6 ? ? N1    A DG 6 ? ? C2    A DG 6 ? ? 118.45 125.10 -6.65  0.60 N 
40 1 N1    A DG 6 ? ? C2    A DG 6 ? ? N3    A DG 6 ? ? 128.51 123.90 4.61   0.60 N 
41 1 C5    A DG 6 ? ? C6    A DG 6 ? ? N1    A DG 6 ? ? 117.03 111.50 5.53   0.50 N 
42 1 N3    A DG 6 ? ? C2    A DG 6 ? ? N2    A DG 6 ? ? 111.30 119.90 -8.60  0.70 N 
43 1 N1    A DG 6 ? ? C6    A DG 6 ? ? O6    A DG 6 ? ? 115.70 119.90 -4.20  0.60 N 
# 
_struct_site_keywords.site_id   1 
_struct_site_keywords.text      INTERCALATION 
# 
loop_
_refine_B_iso.class 
_refine_B_iso.details 
_refine_B_iso.treatment 
_refine_B_iso.pdbx_refine_id 
'ALL ATOMS'  TR isotropic 'X-RAY DIFFRACTION' 
'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' 
# 
loop_
_refine_occupancy.class 
_refine_occupancy.treatment 
_refine_occupancy.pdbx_refine_id 
'ALL ATOMS'  fix 'X-RAY DIFFRACTION' 
'ALL WATERS' fix 'X-RAY DIFFRACTION' 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O  N N 1   
DA  P      P  N N 2   
DA  OP1    O  N N 3   
DA  OP2    O  N N 4   
DA  "O5'"  O  N N 5   
DA  "C5'"  C  N N 6   
DA  "C4'"  C  N R 7   
DA  "O4'"  O  N N 8   
DA  "C3'"  C  N S 9   
DA  "O3'"  O  N N 10  
DA  "C2'"  C  N N 11  
DA  "C1'"  C  N R 12  
DA  N9     N  Y N 13  
DA  C8     C  Y N 14  
DA  N7     N  Y N 15  
DA  C5     C  Y N 16  
DA  C6     C  Y N 17  
DA  N6     N  N N 18  
DA  N1     N  Y N 19  
DA  C2     C  Y N 20  
DA  N3     N  Y N 21  
DA  C4     C  Y N 22  
DA  HOP3   H  N N 23  
DA  HOP2   H  N N 24  
DA  "H5'"  H  N N 25  
DA  "H5''" H  N N 26  
DA  "H4'"  H  N N 27  
DA  "H3'"  H  N N 28  
DA  "HO3'" H  N N 29  
DA  "H2'"  H  N N 30  
DA  "H2''" H  N N 31  
DA  "H1'"  H  N N 32  
DA  H8     H  N N 33  
DA  H61    H  N N 34  
DA  H62    H  N N 35  
DA  H2     H  N N 36  
DC  OP3    O  N N 37  
DC  P      P  N N 38  
DC  OP1    O  N N 39  
DC  OP2    O  N N 40  
DC  "O5'"  O  N N 41  
DC  "C5'"  C  N N 42  
DC  "C4'"  C  N R 43  
DC  "O4'"  O  N N 44  
DC  "C3'"  C  N S 45  
DC  "O3'"  O  N N 46  
DC  "C2'"  C  N N 47  
DC  "C1'"  C  N R 48  
DC  N1     N  N N 49  
DC  C2     C  N N 50  
DC  O2     O  N N 51  
DC  N3     N  N N 52  
DC  C4     C  N N 53  
DC  N4     N  N N 54  
DC  C5     C  N N 55  
DC  C6     C  N N 56  
DC  HOP3   H  N N 57  
DC  HOP2   H  N N 58  
DC  "H5'"  H  N N 59  
DC  "H5''" H  N N 60  
DC  "H4'"  H  N N 61  
DC  "H3'"  H  N N 62  
DC  "HO3'" H  N N 63  
DC  "H2'"  H  N N 64  
DC  "H2''" H  N N 65  
DC  "H1'"  H  N N 66  
DC  H41    H  N N 67  
DC  H42    H  N N 68  
DC  H5     H  N N 69  
DC  H6     H  N N 70  
DG  OP3    O  N N 71  
DG  P      P  N N 72  
DG  OP1    O  N N 73  
DG  OP2    O  N N 74  
DG  "O5'"  O  N N 75  
DG  "C5'"  C  N N 76  
DG  "C4'"  C  N R 77  
DG  "O4'"  O  N N 78  
DG  "C3'"  C  N S 79  
DG  "O3'"  O  N N 80  
DG  "C2'"  C  N N 81  
DG  "C1'"  C  N R 82  
DG  N9     N  Y N 83  
DG  C8     C  Y N 84  
DG  N7     N  Y N 85  
DG  C5     C  Y N 86  
DG  C6     C  N N 87  
DG  O6     O  N N 88  
DG  N1     N  N N 89  
DG  C2     C  N N 90  
DG  N2     N  N N 91  
DG  N3     N  N N 92  
DG  C4     C  Y N 93  
DG  HOP3   H  N N 94  
DG  HOP2   H  N N 95  
DG  "H5'"  H  N N 96  
DG  "H5''" H  N N 97  
DG  "H4'"  H  N N 98  
DG  "H3'"  H  N N 99  
DG  "HO3'" H  N N 100 
DG  "H2'"  H  N N 101 
DG  "H2''" H  N N 102 
DG  "H1'"  H  N N 103 
DG  H8     H  N N 104 
DG  H1     H  N N 105 
DG  H21    H  N N 106 
DG  H22    H  N N 107 
DM2 C1     C  Y N 108 
DM2 C2     C  Y N 109 
DM2 C3     C  Y N 110 
DM2 C4     C  Y N 111 
DM2 O4     O  N N 112 
DM2 C5     C  Y N 113 
DM2 C6     C  N N 114 
DM2 O6     O  N N 115 
DM2 C7     C  Y N 116 
DM2 C8     C  Y N 117 
DM2 O8     O  N N 118 
DM2 C9     C  Y N 119 
DM2 C10    C  N S 120 
DM2 O10    O  N N 121 
DM2 C11    C  N N 122 
DM2 C12    C  N S 123 
DM2 O12    O  N N 124 
DM2 C13    C  N N 125 
DM2 O13    O  N N 126 
DM2 C14    C  N N 127 
DM2 O14    O  N N 128 
DM2 C15    C  N N 129 
DM2 C16    C  Y N 130 
DM2 C17    C  Y N 131 
DM2 O17    O  N N 132 
DM2 C18    C  Y N 133 
DM2 C19    C  N N 134 
DM2 O19    O  N N 135 
DM2 C20    C  Y N 136 
DM2 C21    C  N N 137 
DM2 "C1'"  C  N R 138 
DM2 "C2'"  C  N N 139 
DM2 "C3'"  C  N S 140 
DM2 "N3'"  N  N N 141 
DM2 "C4'"  C  N S 142 
DM2 "O4'"  O  N N 143 
DM2 "C5'"  C  N S 144 
DM2 "O5'"  O  N N 145 
DM2 "C6'"  C  N N 146 
DM2 H1     H  N N 147 
DM2 H2     H  N N 148 
DM2 H3     H  N N 149 
DM2 HO8    H  N N 150 
DM2 H10    H  N N 151 
DM2 H111   H  N N 152 
DM2 H112   H  N N 153 
DM2 HO12   H  N N 154 
DM2 H141   H  N N 155 
DM2 H142   H  N N 156 
DM2 HO14   H  N N 157 
DM2 H151   H  N N 158 
DM2 H152   H  N N 159 
DM2 HO17   H  N N 160 
DM2 H211   H  N N 161 
DM2 H212   H  N N 162 
DM2 H213   H  N N 163 
DM2 "H1'"  H  N N 164 
DM2 "H2'1" H  N N 165 
DM2 "H2'2" H  N N 166 
DM2 "H3'"  H  N N 167 
DM2 "HN'1" H  N N 168 
DM2 "HN'2" H  N N 169 
DM2 "H4'"  H  N N 170 
DM2 "HO4'" H  N N 171 
DM2 "H5'"  H  N N 172 
DM2 "H6'1" H  N N 173 
DM2 "H6'2" H  N N 174 
DM2 "H6'3" H  N N 175 
DT  OP3    O  N N 176 
DT  P      P  N N 177 
DT  OP1    O  N N 178 
DT  OP2    O  N N 179 
DT  "O5'"  O  N N 180 
DT  "C5'"  C  N N 181 
DT  "C4'"  C  N R 182 
DT  "O4'"  O  N N 183 
DT  "C3'"  C  N S 184 
DT  "O3'"  O  N N 185 
DT  "C2'"  C  N N 186 
DT  "C1'"  C  N R 187 
DT  N1     N  N N 188 
DT  C2     C  N N 189 
DT  O2     O  N N 190 
DT  N3     N  N N 191 
DT  C4     C  N N 192 
DT  O4     O  N N 193 
DT  C5     C  N N 194 
DT  C7     C  N N 195 
DT  C6     C  N N 196 
DT  HOP3   H  N N 197 
DT  HOP2   H  N N 198 
DT  "H5'"  H  N N 199 
DT  "H5''" H  N N 200 
DT  "H4'"  H  N N 201 
DT  "H3'"  H  N N 202 
DT  "HO3'" H  N N 203 
DT  "H2'"  H  N N 204 
DT  "H2''" H  N N 205 
DT  "H1'"  H  N N 206 
DT  H3     H  N N 207 
DT  H71    H  N N 208 
DT  H72    H  N N 209 
DT  H73    H  N N 210 
DT  H6     H  N N 211 
HOH O      O  N N 212 
HOH H1     H  N N 213 
HOH H2     H  N N 214 
NA  NA     NA N N 215 
SPM N1     N  N N 216 
SPM C2     C  N N 217 
SPM C3     C  N N 218 
SPM C4     C  N N 219 
SPM N5     N  N N 220 
SPM C6     C  N N 221 
SPM C7     C  N N 222 
SPM C8     C  N N 223 
SPM C9     C  N N 224 
SPM N10    N  N N 225 
SPM C11    C  N N 226 
SPM C12    C  N N 227 
SPM C13    C  N N 228 
SPM N14    N  N N 229 
SPM HN11   H  N N 230 
SPM HN12   H  N N 231 
SPM H21    H  N N 232 
SPM H22    H  N N 233 
SPM H31    H  N N 234 
SPM H32    H  N N 235 
SPM H41    H  N N 236 
SPM H42    H  N N 237 
SPM HN5    H  N N 238 
SPM H61    H  N N 239 
SPM H62    H  N N 240 
SPM H71    H  N N 241 
SPM H72    H  N N 242 
SPM H81    H  N N 243 
SPM H82    H  N N 244 
SPM H91    H  N N 245 
SPM H92    H  N N 246 
SPM HN0    H  N N 247 
SPM H111   H  N N 248 
SPM H112   H  N N 249 
SPM H121   H  N N 250 
SPM H122   H  N N 251 
SPM H131   H  N N 252 
SPM H132   H  N N 253 
SPM HN41   H  N N 254 
SPM HN42   H  N N 255 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DM2 C1    C2     doub Y N 113 
DM2 C1    C20    sing Y N 114 
DM2 C1    H1     sing N N 115 
DM2 C2    C3     sing Y N 116 
DM2 C2    H2     sing N N 117 
DM2 C3    C4     doub Y N 118 
DM2 C3    H3     sing N N 119 
DM2 C4    O4     sing N N 120 
DM2 C4    C5     sing Y N 121 
DM2 O4    C21    sing N N 122 
DM2 C5    C6     sing N N 123 
DM2 C5    C20    doub Y N 124 
DM2 C6    O6     doub N N 125 
DM2 C6    C7     sing N N 126 
DM2 C7    C8     doub Y N 127 
DM2 C7    C18    sing Y N 128 
DM2 C8    O8     sing N N 129 
DM2 C8    C9     sing Y N 130 
DM2 O8    HO8    sing N N 131 
DM2 C9    C10    sing N N 132 
DM2 C9    C16    doub Y N 133 
DM2 C10   O10    sing N N 134 
DM2 C10   C11    sing N N 135 
DM2 C10   H10    sing N N 136 
DM2 O10   "C1'"  sing N N 137 
DM2 C11   C12    sing N N 138 
DM2 C11   H111   sing N N 139 
DM2 C11   H112   sing N N 140 
DM2 C12   O12    sing N N 141 
DM2 C12   C13    sing N N 142 
DM2 C12   C15    sing N N 143 
DM2 O12   HO12   sing N N 144 
DM2 C13   O13    doub N N 145 
DM2 C13   C14    sing N N 146 
DM2 C14   O14    sing N N 147 
DM2 C14   H141   sing N N 148 
DM2 C14   H142   sing N N 149 
DM2 O14   HO14   sing N N 150 
DM2 C15   C16    sing N N 151 
DM2 C15   H151   sing N N 152 
DM2 C15   H152   sing N N 153 
DM2 C16   C17    sing Y N 154 
DM2 C17   O17    sing N N 155 
DM2 C17   C18    doub Y N 156 
DM2 O17   HO17   sing N N 157 
DM2 C18   C19    sing N N 158 
DM2 C19   O19    doub N N 159 
DM2 C19   C20    sing N N 160 
DM2 C21   H211   sing N N 161 
DM2 C21   H212   sing N N 162 
DM2 C21   H213   sing N N 163 
DM2 "C1'" "C2'"  sing N N 164 
DM2 "C1'" "O5'"  sing N N 165 
DM2 "C1'" "H1'"  sing N N 166 
DM2 "C2'" "C3'"  sing N N 167 
DM2 "C2'" "H2'1" sing N N 168 
DM2 "C2'" "H2'2" sing N N 169 
DM2 "C3'" "N3'"  sing N N 170 
DM2 "C3'" "C4'"  sing N N 171 
DM2 "C3'" "H3'"  sing N N 172 
DM2 "N3'" "HN'1" sing N N 173 
DM2 "N3'" "HN'2" sing N N 174 
DM2 "C4'" "O4'"  sing N N 175 
DM2 "C4'" "C5'"  sing N N 176 
DM2 "C4'" "H4'"  sing N N 177 
DM2 "O4'" "HO4'" sing N N 178 
DM2 "C5'" "O5'"  sing N N 179 
DM2 "C5'" "C6'"  sing N N 180 
DM2 "C5'" "H5'"  sing N N 181 
DM2 "C6'" "H6'1" sing N N 182 
DM2 "C6'" "H6'2" sing N N 183 
DM2 "C6'" "H6'3" sing N N 184 
DT  OP3   P      sing N N 185 
DT  OP3   HOP3   sing N N 186 
DT  P     OP1    doub N N 187 
DT  P     OP2    sing N N 188 
DT  P     "O5'"  sing N N 189 
DT  OP2   HOP2   sing N N 190 
DT  "O5'" "C5'"  sing N N 191 
DT  "C5'" "C4'"  sing N N 192 
DT  "C5'" "H5'"  sing N N 193 
DT  "C5'" "H5''" sing N N 194 
DT  "C4'" "O4'"  sing N N 195 
DT  "C4'" "C3'"  sing N N 196 
DT  "C4'" "H4'"  sing N N 197 
DT  "O4'" "C1'"  sing N N 198 
DT  "C3'" "O3'"  sing N N 199 
DT  "C3'" "C2'"  sing N N 200 
DT  "C3'" "H3'"  sing N N 201 
DT  "O3'" "HO3'" sing N N 202 
DT  "C2'" "C1'"  sing N N 203 
DT  "C2'" "H2'"  sing N N 204 
DT  "C2'" "H2''" sing N N 205 
DT  "C1'" N1     sing N N 206 
DT  "C1'" "H1'"  sing N N 207 
DT  N1    C2     sing N N 208 
DT  N1    C6     sing N N 209 
DT  C2    O2     doub N N 210 
DT  C2    N3     sing N N 211 
DT  N3    C4     sing N N 212 
DT  N3    H3     sing N N 213 
DT  C4    O4     doub N N 214 
DT  C4    C5     sing N N 215 
DT  C5    C7     sing N N 216 
DT  C5    C6     doub N N 217 
DT  C7    H71    sing N N 218 
DT  C7    H72    sing N N 219 
DT  C7    H73    sing N N 220 
DT  C6    H6     sing N N 221 
HOH O     H1     sing N N 222 
HOH O     H2     sing N N 223 
SPM N1    C2     sing N N 224 
SPM N1    HN11   sing N N 225 
SPM N1    HN12   sing N N 226 
SPM C2    C3     sing N N 227 
SPM C2    H21    sing N N 228 
SPM C2    H22    sing N N 229 
SPM C3    C4     sing N N 230 
SPM C3    H31    sing N N 231 
SPM C3    H32    sing N N 232 
SPM C4    N5     sing N N 233 
SPM C4    H41    sing N N 234 
SPM C4    H42    sing N N 235 
SPM N5    C6     sing N N 236 
SPM N5    HN5    sing N N 237 
SPM C6    C7     sing N N 238 
SPM C6    H61    sing N N 239 
SPM C6    H62    sing N N 240 
SPM C7    C8     sing N N 241 
SPM C7    H71    sing N N 242 
SPM C7    H72    sing N N 243 
SPM C8    C9     sing N N 244 
SPM C8    H81    sing N N 245 
SPM C8    H82    sing N N 246 
SPM C9    N10    sing N N 247 
SPM C9    H91    sing N N 248 
SPM C9    H92    sing N N 249 
SPM N10   C11    sing N N 250 
SPM N10   HN0    sing N N 251 
SPM C11   C12    sing N N 252 
SPM C11   H111   sing N N 253 
SPM C11   H112   sing N N 254 
SPM C12   C13    sing N N 255 
SPM C12   H121   sing N N 256 
SPM C12   H122   sing N N 257 
SPM C13   N14    sing N N 258 
SPM C13   H131   sing N N 259 
SPM C13   H132   sing N N 260 
SPM N14   HN41   sing N N 261 
SPM N14   HN42   sing N N 262 
# 
_ndb_struct_conf_na.entry_id   1D12 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1 1_555 A DG 6 8_665 0.171  -0.195 -0.033 9.246   1.248  -2.947 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 
1 A DG 2 1_555 A DC 5 8_665 -0.135 -0.244 -0.134 -15.310 0.966  -1.956 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 
1 A DA 3 1_555 A DT 4 8_665 -0.083 -0.004 -0.029 -6.595  -3.751 0.079  3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 
1 A DT 4 1_555 A DA 3 8_665 0.083  -0.004 -0.029 6.595   -3.751 0.079  4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 
1 A DC 5 1_555 A DG 2 8_665 0.135  -0.244 -0.134 15.310  0.966  -1.956 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 
1 A DG 6 1_555 A DC 1 8_665 -0.171 -0.195 -0.033 -9.246  1.248  -2.947 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.257  0.967  7.086 0.263  -2.737 36.328 2.366  -1.931 7.006 -4.382 -0.421 
36.428 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 
1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.235 0.515  3.198 -2.653 -0.622 31.569 1.057  1.778  3.278 -1.141 4.865  
31.684 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 
1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000  -0.508 3.296 0.000  4.905  30.845 -1.872 0.000  3.179 9.150  0.000  
31.223 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 
1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.235  0.515  3.198 2.653  -0.622 31.569 1.057  -1.778 3.278 -1.141 -4.865 
31.684 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ? 
1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.257 0.967  7.086 -0.263 -2.737 36.328 2.366  1.931  7.006 -4.382 0.421  
36.428 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? 
# 
_atom_sites.entry_id                    1D12 
_atom_sites.fract_transf_matrix[1][1]   0.035448 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.035448 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.018801 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
N  
NA 
O  
P  
# 
loop_