data_1D16 # _entry.id 1D16 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D16 pdb_00001d16 10.2210/pdb1d16/pdb RCSB UDP011 ? ? WWPDB D_1000172621 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-01-09 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D16 _pdbx_database_status.recvd_initial_deposition_date 1988-04-12 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chattopadhyaya, R.' 1 'Grzeskowiak, K.' 2 'Dickerson, R.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops.' J.Mol.Biol. 211 189 210 1990 JMOBAK UK 0022-2836 0070 ? 2299669 '10.1016/0022-2836(90)90020-M' 1 'X-Ray Structure of a DNA Hairpin Molecule' Nature 334 175 179 1988 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chattopadhyaya, R.' 1 ? primary 'Grzeskowiak, K.' 2 ? primary 'Dickerson, R.E.' 3 ? 1 'Chattopadhyaya, R.' 4 ? 1 'Ikuta, S.' 5 ? 1 'Grzeskowiak, K.' 6 ? 1 'Dickerson., R.E.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*GP*TP*TP*TP*TP*CP*GP*CP*GP*CP*G)-3') ; 4882.139 1 ? ? ? ? 2 water nat water 18.015 70 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)(DT)(DT)(DT)(DT)(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCGTTTTCGCGCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DT n 1 11 DC n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DC n 1 16 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n A 1 13 DC 13 13 13 DC C A . n A 1 14 DG 14 14 14 DG G A . n A 1 15 DC 15 15 15 DC C A . n A 1 16 DG 16 16 16 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 17 17 HOH HOH A . B 2 HOH 2 18 18 HOH HOH A . B 2 HOH 3 19 19 HOH HOH A . B 2 HOH 4 20 20 HOH HOH A . B 2 HOH 5 21 21 HOH HOH A . B 2 HOH 6 22 22 HOH HOH A . B 2 HOH 7 23 23 HOH HOH A . B 2 HOH 8 24 24 HOH HOH A . B 2 HOH 9 25 25 HOH HOH A . B 2 HOH 10 26 26 HOH HOH A . B 2 HOH 11 27 27 HOH HOH A . B 2 HOH 12 28 28 HOH HOH A . B 2 HOH 13 29 29 HOH HOH A . B 2 HOH 14 30 30 HOH HOH A . B 2 HOH 15 31 31 HOH HOH A . B 2 HOH 16 32 32 HOH HOH A . B 2 HOH 17 33 33 HOH HOH A . B 2 HOH 18 34 34 HOH HOH A . B 2 HOH 19 35 35 HOH HOH A . B 2 HOH 20 36 36 HOH HOH A . B 2 HOH 21 37 37 HOH HOH A . B 2 HOH 22 38 38 HOH HOH A . B 2 HOH 23 39 39 HOH HOH A . B 2 HOH 24 40 40 HOH HOH A . B 2 HOH 25 41 41 HOH HOH A . B 2 HOH 26 42 42 HOH HOH A . B 2 HOH 27 43 43 HOH HOH A . B 2 HOH 28 44 44 HOH HOH A . B 2 HOH 29 45 45 HOH HOH A . B 2 HOH 30 46 46 HOH HOH A . B 2 HOH 31 47 47 HOH HOH A . B 2 HOH 32 48 48 HOH HOH A . B 2 HOH 33 49 49 HOH HOH A . B 2 HOH 34 50 50 HOH HOH A . B 2 HOH 35 51 51 HOH HOH A . B 2 HOH 36 52 52 HOH HOH A . B 2 HOH 37 53 53 HOH HOH A . B 2 HOH 38 54 54 HOH HOH A . B 2 HOH 39 55 55 HOH HOH A . B 2 HOH 40 56 56 HOH HOH A . B 2 HOH 41 57 57 HOH HOH A . B 2 HOH 42 58 58 HOH HOH A . B 2 HOH 43 59 59 HOH HOH A . B 2 HOH 44 60 60 HOH HOH A . B 2 HOH 45 61 61 HOH HOH A . B 2 HOH 46 62 62 HOH HOH A . B 2 HOH 47 63 63 HOH HOH A . B 2 HOH 48 64 64 HOH HOH A . B 2 HOH 49 65 65 HOH HOH A . B 2 HOH 50 66 66 HOH HOH A . B 2 HOH 51 67 67 HOH HOH A . B 2 HOH 52 68 68 HOH HOH A . B 2 HOH 53 69 69 HOH HOH A . B 2 HOH 54 70 70 HOH HOH A . B 2 HOH 55 71 71 HOH HOH A . B 2 HOH 56 72 72 HOH HOH A . B 2 HOH 57 73 73 HOH HOH A . B 2 HOH 58 74 74 HOH HOH A . B 2 HOH 59 75 75 HOH HOH A . B 2 HOH 60 76 76 HOH HOH A . B 2 HOH 61 77 77 HOH HOH A . B 2 HOH 62 78 78 HOH HOH A . B 2 HOH 63 79 79 HOH HOH A . B 2 HOH 64 80 80 HOH HOH A . B 2 HOH 65 81 81 HOH HOH A . B 2 HOH 66 82 82 HOH HOH A . B 2 HOH 67 83 83 HOH HOH A . B 2 HOH 68 84 84 HOH HOH A . B 2 HOH 69 85 85 HOH HOH A . B 2 HOH 70 86 86 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D16 _cell.length_a 57.180 _cell.length_b 21.630 _cell.length_c 36.400 _cell.angle_alpha 90.00 _cell.angle_beta 95.22 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D16 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1D16 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas 1.5000 _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.32 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 280.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, temperature 280.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 ISOPROPANOL ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 1 'SR NITRATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 ISOPROPANOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 278.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SYNTEX P1' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D16 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.100 _reflns.number_obs 2825 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D16 _refine.ls_number_reflns_obs 1509 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2000000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 323 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 393 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.043 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D16 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D16 _struct.title 'STRUCTURE OF A T4 HAIRPIN LOOP ON A Z-DNA STEM AND COMPARISON WITH A-RNA AND B-DNA LOOPS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D16 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA STEM, SINGLE STRAND, HAIRPIN LOOP, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D16 _struct_ref.pdbx_db_accession 1D16 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D16 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D16 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 16 N1 ? ? A DC 1 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 16 O6 ? ? A DC 1 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 16 N2 ? ? A DC 1 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 15 N3 ? ? A DG 2 A DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 15 O2 ? ? A DG 2 A DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 15 N4 ? ? A DG 2 A DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 14 N1 ? ? A DC 3 A DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 14 O6 ? ? A DC 3 A DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 14 N2 ? ? A DC 3 A DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 4 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 4 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 4 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 12 N1 ? ? A DC 5 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 12 O6 ? ? A DC 5 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 12 N2 ? ? A DC 5 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 6 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 6 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 6 A DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 23 ? ? O A HOH 57 ? ? 1.60 2 1 "O5'" A DG 2 ? ? O A HOH 79 ? ? 1.72 3 1 O A HOH 57 ? ? O A HOH 83 ? ? 1.90 4 1 "O4'" A DG 2 ? ? O A HOH 79 ? ? 2.09 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DC 3 ? ? C6 A DC 3 ? ? 1.326 1.367 -0.041 0.006 N 2 1 N3 A DC 3 ? ? C4 A DC 3 ? ? 1.401 1.335 0.066 0.007 N 3 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.382 1.335 0.047 0.007 N 4 1 N3 A DC 15 ? ? C4 A DC 15 ? ? 1.379 1.335 0.044 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 98.62 104.50 -5.88 0.40 N 2 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 123.50 115.70 7.80 1.20 N 3 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.07 102.40 -6.33 0.80 N 4 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.52 108.30 2.22 0.30 N 5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.64 108.30 4.34 0.30 N 6 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.75 125.10 -6.35 0.60 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.61 111.50 5.11 0.50 N 8 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 112.58 119.90 -7.32 0.60 N 9 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 139.42 119.70 19.72 1.20 Y 10 1 "O3'" A DG 2 ? ? P A DC 3 ? ? "O5'" A DC 3 ? ? 117.03 104.00 13.03 1.90 Y 11 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 110.08 119.60 -9.52 1.50 N 12 1 "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 96.89 102.20 -5.31 0.70 N 13 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 114.97 108.30 6.67 0.30 N 14 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 125.62 121.00 4.62 0.50 N 15 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.41 118.90 4.51 0.60 N 16 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 115.15 121.90 -6.75 0.70 N 17 1 C6 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 129.65 120.80 8.85 1.20 N 18 1 C2 A DC 3 ? ? N1 A DC 3 ? ? "C1'" A DC 3 ? ? 112.13 118.80 -6.67 1.10 N 19 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 121.38 110.70 10.68 1.20 N 20 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.02 109.40 -7.38 0.80 N 21 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 110.70 106.80 3.90 0.50 N 22 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 99.60 108.00 -8.40 0.70 N 23 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 101.23 104.30 -3.07 0.50 N 24 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 123.90 128.60 -4.70 0.60 N 25 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.71 109.40 -5.69 0.80 N 26 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 110.68 106.00 4.68 0.60 N 27 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 109.97 106.80 3.17 0.50 N 28 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 134.70 119.70 15.00 1.20 Y 29 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 116.43 108.30 8.13 0.30 N 30 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 119.47 125.10 -5.63 0.60 N 31 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.91 111.50 4.41 0.50 N 32 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 112.40 119.90 -7.50 0.70 N 33 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 121.59 128.60 -7.01 0.60 N 34 1 OP1 A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 104.03 119.60 -15.57 1.50 N 35 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 101.62 109.40 -7.78 0.80 N 36 1 P A DT 7 ? ? "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? 133.19 120.90 12.29 1.60 N 37 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 110.43 108.30 2.13 0.30 N 38 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.61 114.60 4.01 0.60 N 39 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 120.49 127.20 -6.71 0.60 N 40 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.82 115.20 4.62 0.60 N 41 1 N3 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 116.13 119.90 -3.77 0.60 N 42 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 132.85 119.70 13.15 1.20 Y 43 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.95 108.30 4.65 0.30 N 44 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 118.83 114.60 4.23 0.60 N 45 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.32 127.20 -5.88 0.60 N 46 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.70 115.20 4.50 0.60 N 47 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 123.23 119.00 4.23 0.60 N 48 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DT 9 ? ? 129.53 119.70 9.83 1.20 Y 49 1 "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 99.89 104.50 -4.61 0.40 N 50 1 "C5'" A DT 9 ? ? "C4'" A DT 9 ? ? "C3'" A DT 9 ? ? 123.67 115.70 7.97 1.20 N 51 1 "C1'" A DT 9 ? ? "O4'" A DT 9 ? ? "C4'" A DT 9 ? ? 95.77 110.10 -14.33 1.00 N 52 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 112.11 108.30 3.81 0.30 N 53 1 N1 A DT 9 ? ? C2 A DT 9 ? ? N3 A DT 9 ? ? 118.72 114.60 4.12 0.60 N 54 1 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 120.35 127.20 -6.85 0.60 N 55 1 N3 A DT 9 ? ? C4 A DT 9 ? ? C5 A DT 9 ? ? 119.89 115.20 4.69 0.60 N 56 1 N3 A DT 9 ? ? C4 A DT 9 ? ? O4 A DT 9 ? ? 116.15 119.90 -3.75 0.60 N 57 1 "C1'" A DT 10 ? ? "O4'" A DT 10 ? ? "C4'" A DT 10 ? ? 116.94 110.30 6.64 0.70 N 58 1 N1 A DT 10 ? ? C2 A DT 10 ? ? N3 A DT 10 ? ? 118.23 114.60 3.63 0.60 N 59 1 C2 A DT 10 ? ? N3 A DT 10 ? ? C4 A DT 10 ? ? 122.21 127.20 -4.99 0.60 N 60 1 N3 A DT 10 ? ? C4 A DT 10 ? ? C5 A DT 10 ? ? 119.19 115.20 3.99 0.60 N 61 1 OP1 A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 108.11 119.60 -11.49 1.50 N 62 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 128.09 110.70 17.39 1.20 N 63 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.42 108.30 2.12 0.30 N 64 1 C6 A DC 11 ? ? N1 A DC 11 ? ? C2 A DC 11 ? ? 117.72 120.30 -2.58 0.40 N 65 1 C2 A DC 11 ? ? N3 A DC 11 ? ? C4 A DC 11 ? ? 124.08 119.90 4.18 0.50 N 66 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 118.75 121.90 -3.15 0.40 N 67 1 C5 A DC 11 ? ? C6 A DC 11 ? ? N1 A DC 11 ? ? 124.57 121.00 3.57 0.50 N 68 1 C5 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 126.71 120.20 6.51 0.70 N 69 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 130.92 119.70 11.22 1.20 Y 70 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 102.91 109.40 -6.49 0.80 N 71 1 "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? 111.70 106.00 5.70 0.60 N 72 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 117.42 108.30 9.12 0.30 N 73 1 N1 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 108.85 116.20 -7.35 0.90 N 74 1 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 124.31 119.90 4.41 0.70 N 75 1 "O5'" A DC 13 ? ? "C5'" A DC 13 ? ? "C4'" A DC 13 ? ? 100.21 109.40 -9.19 0.80 N 76 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? "C2'" A DC 13 ? ? 100.45 105.90 -5.45 0.80 N 77 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 113.59 108.30 5.29 0.30 N 78 1 C5 A DC 13 ? ? C6 A DC 13 ? ? N1 A DC 13 ? ? 124.63 121.00 3.63 0.50 N 79 1 N1 A DC 13 ? ? C2 A DC 13 ? ? O2 A DC 13 ? ? 122.84 118.90 3.94 0.60 N 80 1 OP1 A DG 14 ? ? P A DG 14 ? ? OP2 A DG 14 ? ? 108.64 119.60 -10.96 1.50 N 81 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? "C2'" A DG 14 ? ? 109.90 106.80 3.10 0.50 N 82 1 "C3'" A DG 14 ? ? "O3'" A DG 14 ? ? P A DC 15 ? ? 111.96 119.70 -7.74 1.20 Y 83 1 "O5'" A DC 15 ? ? "C5'" A DC 15 ? ? "C4'" A DC 15 ? ? 103.06 109.40 -6.34 0.80 N 84 1 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.75 108.30 2.45 0.30 N 85 1 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 127.25 118.90 8.35 0.60 N 86 1 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 115.31 121.90 -6.59 0.70 N 87 1 N3 A DC 15 ? ? C4 A DC 15 ? ? N4 A DC 15 ? ? 113.26 118.00 -4.74 0.70 N 88 1 C5 A DC 15 ? ? C4 A DC 15 ? ? N4 A DC 15 ? ? 126.03 120.20 5.83 0.70 N 89 1 "C3'" A DC 15 ? ? "O3'" A DC 15 ? ? P A DG 16 ? ? 134.28 119.70 14.58 1.20 Y 90 1 P A DG 16 ? ? "O5'" A DG 16 ? ? "C5'" A DG 16 ? ? 109.80 120.90 -11.10 1.60 N 91 1 "C4'" A DG 16 ? ? "C3'" A DG 16 ? ? "C2'" A DG 16 ? ? 96.28 102.20 -5.92 0.70 N 92 1 "C3'" A DG 16 ? ? "C2'" A DG 16 ? ? "C1'" A DG 16 ? ? 92.59 102.40 -9.81 0.80 N 93 1 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 114.85 108.30 6.55 0.30 N 94 1 C5 A DG 16 ? ? C6 A DG 16 ? ? N1 A DG 16 ? ? 115.21 111.50 3.71 0.50 N 95 1 N1 A DG 16 ? ? C6 A DG 16 ? ? O6 A DG 16 ? ? 113.71 119.90 -6.19 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DT OP3 O N N 72 DT P P N N 73 DT OP1 O N N 74 DT OP2 O N N 75 DT "O5'" O N N 76 DT "C5'" C N N 77 DT "C4'" C N R 78 DT "O4'" O N N 79 DT "C3'" C N S 80 DT "O3'" O N N 81 DT "C2'" C N N 82 DT "C1'" C N R 83 DT N1 N N N 84 DT C2 C N N 85 DT O2 O N N 86 DT N3 N N N 87 DT C4 C N N 88 DT O4 O N N 89 DT C5 C N N 90 DT C7 C N N 91 DT C6 C N N 92 DT HOP3 H N N 93 DT HOP2 H N N 94 DT "H5'" H N N 95 DT "H5''" H N N 96 DT "H4'" H N N 97 DT "H3'" H N N 98 DT "HO3'" H N N 99 DT "H2'" H N N 100 DT "H2''" H N N 101 DT "H1'" H N N 102 DT H3 H N N 103 DT H71 H N N 104 DT H72 H N N 105 DT H73 H N N 106 DT H6 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DT OP3 P sing N N 75 DT OP3 HOP3 sing N N 76 DT P OP1 doub N N 77 DT P OP2 sing N N 78 DT P "O5'" sing N N 79 DT OP2 HOP2 sing N N 80 DT "O5'" "C5'" sing N N 81 DT "C5'" "C4'" sing N N 82 DT "C5'" "H5'" sing N N 83 DT "C5'" "H5''" sing N N 84 DT "C4'" "O4'" sing N N 85 DT "C4'" "C3'" sing N N 86 DT "C4'" "H4'" sing N N 87 DT "O4'" "C1'" sing N N 88 DT "C3'" "O3'" sing N N 89 DT "C3'" "C2'" sing N N 90 DT "C3'" "H3'" sing N N 91 DT "O3'" "HO3'" sing N N 92 DT "C2'" "C1'" sing N N 93 DT "C2'" "H2'" sing N N 94 DT "C2'" "H2''" sing N N 95 DT "C1'" N1 sing N N 96 DT "C1'" "H1'" sing N N 97 DT N1 C2 sing N N 98 DT N1 C6 sing N N 99 DT C2 O2 doub N N 100 DT C2 N3 sing N N 101 DT N3 C4 sing N N 102 DT N3 H3 sing N N 103 DT C4 O4 doub N N 104 DT C4 C5 sing N N 105 DT C5 C7 sing N N 106 DT C5 C6 doub N N 107 DT C7 H71 sing N N 108 DT C7 H72 sing N N 109 DT C7 H73 sing N N 110 DT C6 H6 sing N N 111 HOH O H1 sing N N 112 HOH O H2 sing N N 113 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D16 'z-form double helix' 1D16 'hairpin loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 16 1_555 -0.759 -0.244 0.365 5.093 -5.520 -2.729 1 A_DC1:DG16_A A 1 ? A 16 ? 19 1 1 A DG 2 1_555 A DC 15 1_555 1.114 -0.175 -0.033 -9.192 -4.226 1.448 2 A_DG2:DC15_A A 2 ? A 15 ? 19 1 1 A DC 3 1_555 A DG 14 1_555 -0.988 -0.287 0.202 -0.596 -6.576 -0.920 3 A_DC3:DG14_A A 3 ? A 14 ? 19 1 1 A DG 4 1_555 A DC 13 1_555 0.255 -0.154 0.135 -11.397 2.311 3.119 4 A_DG4:DC13_A A 4 ? A 13 ? 19 1 1 A DC 5 1_555 A DG 12 1_555 -0.337 0.012 -0.281 14.972 -2.361 2.518 5 A_DC5:DG12_A A 5 ? A 12 ? 19 1 1 A DG 6 1_555 A DC 11 1_555 0.000 -0.096 -0.376 -0.926 -3.843 0.375 6 A_DG6:DC11_A A 6 ? A 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 16 1_555 A DG 2 1_555 A DC 15 1_555 -0.117 4.823 3.990 5.861 5.490 -0.971 -39.690 5.041 -2.709 -56.822 60.657 -8.089 1 AA_DC1DG2:DC15DG16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A DG 2 1_555 A DC 15 1_555 A DC 3 1_555 A DG 14 1_555 -0.288 -0.524 3.497 -0.644 -0.581 -58.444 0.569 -0.331 3.489 0.595 -0.659 -58.450 2 AA_DG2DC3:DG14DC15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A DC 3 1_555 A DG 14 1_555 A DG 4 1_555 A DC 13 1_555 -0.445 5.356 3.904 1.611 -7.481 -4.815 1.941 4.915 6.590 56.572 12.186 -9.040 3 AA_DC3DG4:DC13DG14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A DG 4 1_555 A DC 13 1_555 A DC 5 1_555 A DG 12 1_555 0.236 -0.682 2.830 2.556 -5.911 -50.146 1.157 0.431 2.724 6.941 3.002 -50.532 4 AA_DG4DC5:DG12DC13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A DC 5 1_555 A DG 12 1_555 A DG 6 1_555 A DC 11 1_555 -0.089 5.720 3.563 4.919 -5.415 -10.440 -16.390 8.120 5.379 25.975 23.597 -12.742 5 AA_DC5DG6:DC11DG12_AA A 5 ? A 12 ? A 6 ? A 11 ? # _atom_sites.entry_id 1D16 _atom_sites.fract_transf_matrix[1][1] 0.017489 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001598 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.046232 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027587 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_