data_1D29 # _entry.id 1D29 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D29 pdb_00001d29 10.2210/pdb1d29/pdb RCSB BDL029 ? ? WWPDB D_1000172633 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D29 _pdbx_database_status.recvd_initial_deposition_date 1991-05-23 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Larsen, T.A.' 1 'Kopka, M.L.' 2 'Dickerson, R.E.' 3 # _citation.id primary _citation.title 'Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG.' _citation.journal_abbrev Biochemistry _citation.journal_volume 30 _citation.page_first 4443 _citation.page_last 4449 _citation.year 1991 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1850624 _citation.pdbx_database_id_DOI 10.1021/bi00232a010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Larsen, T.A.' 1 ? primary 'Kopka, M.L.' 2 ? primary 'Dickerson, R.E.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3') ; 3662.404 2 ? ? ? ? 2 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DG)(DA)(DA)(DT)(DT)(DC)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTGAATTCACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DA n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DA 10 10 10 DA A A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DT 3 15 15 DT T B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DA 10 22 22 DA A B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 25 25 HOH HOH A . C 2 HOH 2 26 26 HOH HOH A . C 2 HOH 3 27 27 HOH HOH A . C 2 HOH 4 29 29 HOH HOH A . C 2 HOH 5 30 30 HOH HOH A . C 2 HOH 6 31 31 HOH HOH A . C 2 HOH 7 32 32 HOH HOH A . C 2 HOH 8 36 36 HOH HOH A . C 2 HOH 9 37 37 HOH HOH A . C 2 HOH 10 44 44 HOH HOH A . C 2 HOH 11 46 46 HOH HOH A . C 2 HOH 12 48 48 HOH HOH A . C 2 HOH 13 51 51 HOH HOH A . C 2 HOH 14 53 53 HOH HOH A . C 2 HOH 15 54 54 HOH HOH A . C 2 HOH 16 56 56 HOH HOH A . C 2 HOH 17 57 57 HOH HOH A . C 2 HOH 18 60 60 HOH HOH A . D 2 HOH 1 28 28 HOH HOH B . D 2 HOH 2 33 33 HOH HOH B . D 2 HOH 3 34 34 HOH HOH B . D 2 HOH 4 35 35 HOH HOH B . D 2 HOH 5 38 38 HOH HOH B . D 2 HOH 6 39 39 HOH HOH B . D 2 HOH 7 40 40 HOH HOH B . D 2 HOH 8 41 41 HOH HOH B . D 2 HOH 9 42 42 HOH HOH B . D 2 HOH 10 43 43 HOH HOH B . D 2 HOH 11 45 45 HOH HOH B . D 2 HOH 12 47 47 HOH HOH B . D 2 HOH 13 49 49 HOH HOH B . D 2 HOH 14 50 50 HOH HOH B . D 2 HOH 15 52 52 HOH HOH B . D 2 HOH 16 55 55 HOH HOH B . D 2 HOH 17 58 58 HOH HOH B . D 2 HOH 18 59 59 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D29 _cell.length_a 24.940 _cell.length_b 40.780 _cell.length_c 66.130 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D29 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D29 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.42 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D29 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 2.500 _reflns.number_obs 1475 _reflns.number_all 1835 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D29 _refine.ls_number_reflns_obs 1475 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1580000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 522 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1D29 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D29 _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D29 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D29 _struct_ref.pdbx_db_accession 1D29 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D29 A 1 ? 12 ? 1D29 1 ? 12 ? 1 12 2 1 1D29 B 1 ? 12 ? 1D29 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 10 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 10 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N3 A DC 1 ? ? C4 A DC 1 ? ? 1.382 1.335 0.047 0.007 N 2 1 C4 A DT 3 ? ? O4 A DT 3 ? ? 1.285 1.228 0.057 0.009 N 3 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.506 1.593 -0.087 0.010 N 4 1 "O3'" A DG 4 ? ? P A DA 5 ? ? 1.683 1.607 0.076 0.012 Y 5 1 "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 1.457 1.518 -0.061 0.010 N 6 1 N7 A DA 5 ? ? C8 A DA 5 ? ? 1.363 1.311 0.052 0.007 N 7 1 P A DA 6 ? ? OP2 A DA 6 ? ? 1.589 1.485 0.104 0.017 N 8 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.377 1.446 -0.069 0.010 N 9 1 C2 A DT 8 ? ? O2 A DT 8 ? ? 1.278 1.220 0.058 0.008 N 10 1 N1 A DC 11 ? ? C6 A DC 11 ? ? 1.306 1.367 -0.061 0.006 N 11 1 "O3'" A DC 11 ? ? P A DG 12 ? ? 1.699 1.607 0.092 0.012 Y 12 1 "O3'" B DG 14 ? ? P B DT 15 ? ? 1.499 1.607 -0.108 0.012 Y 13 1 P B DT 15 ? ? "O5'" B DT 15 ? ? 1.520 1.593 -0.073 0.010 N 14 1 P B DA 18 ? ? "O5'" B DA 18 ? ? 1.681 1.593 0.088 0.010 N 15 1 P B DT 19 ? ? "O5'" B DT 19 ? ? 1.707 1.593 0.114 0.010 N 16 1 "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.435 1.518 -0.083 0.010 N 17 1 C6 B DT 19 ? ? N1 B DT 19 ? ? 1.313 1.378 -0.065 0.007 N 18 1 C5 B DT 19 ? ? C7 B DT 19 ? ? 1.543 1.496 0.047 0.006 N 19 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? 1.489 1.420 0.069 0.011 N 20 1 P B DA 22 ? ? OP1 B DA 22 ? ? 1.616 1.485 0.131 0.017 N 21 1 N3 B DA 22 ? ? C4 B DA 22 ? ? 1.302 1.344 -0.042 0.006 N 22 1 C4 B DA 22 ? ? C5 B DA 22 ? ? 1.337 1.383 -0.046 0.007 N 23 1 P B DC 23 ? ? "O5'" B DC 23 ? ? 1.660 1.593 0.067 0.010 N 24 1 P B DG 24 ? ? "O5'" B DG 24 ? ? 1.674 1.593 0.081 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 99.78 109.40 -9.62 0.80 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 94.65 102.40 -7.75 0.80 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 118.46 108.30 10.16 0.30 N 4 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 127.85 118.90 8.95 0.60 N 5 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 115.99 121.90 -5.91 0.70 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 110.00 118.00 -8.00 0.70 N 7 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 129.14 120.20 8.94 0.70 N 8 1 C6 A DC 1 ? ? N1 A DC 1 ? ? "C1'" A DC 1 ? ? 128.22 120.80 7.42 1.20 N 9 1 C2 A DC 1 ? ? N1 A DC 1 ? ? "C1'" A DC 1 ? ? 109.51 118.80 -9.29 1.10 N 10 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 98.41 109.40 -10.99 0.80 N 11 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 95.68 104.50 -8.82 0.40 N 12 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 96.21 105.90 -9.69 0.80 N 13 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 97.59 108.00 -10.41 0.70 N 14 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 119.75 125.10 -5.35 0.60 N 15 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.14 111.50 5.64 0.50 N 16 1 C6 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 134.02 130.40 3.62 0.60 N 17 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? 97.41 104.50 -7.09 0.40 N 18 1 "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? "O4'" A DT 3 ? ? 120.02 109.80 10.22 1.10 N 19 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 98.50 108.00 -9.50 0.70 N 20 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 119.29 114.60 4.69 0.60 N 21 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 118.40 127.20 -8.80 0.60 N 22 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 122.14 115.20 6.94 0.60 N 23 1 C5 A DT 3 ? ? C6 A DT 3 ? ? N1 A DT 3 ? ? 119.53 123.70 -4.17 0.60 N 24 1 N1 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.28 123.10 -4.82 0.80 N 25 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 103.83 119.60 -15.77 1.50 N 26 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 143.68 110.70 32.98 1.20 N 27 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.15 109.40 -7.25 0.80 N 28 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.20 114.10 -12.90 1.80 N 29 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 118.50 109.80 8.70 1.10 N 30 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 93.48 102.40 -8.92 0.80 N 31 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 99.08 105.90 -6.82 0.80 N 32 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.95 108.30 3.65 0.30 N 33 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 121.17 125.10 -3.93 0.60 N 34 1 "O3'" A DG 4 ? ? P A DA 5 ? ? "O5'" A DA 5 ? ? 91.16 104.00 -12.84 1.90 Y 35 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 119.38 110.70 8.68 1.20 N 36 1 N9 A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 129.85 114.30 15.55 1.40 N 37 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 94.55 108.00 -13.45 0.70 N 38 1 C2 A DA 5 ? ? N3 A DA 5 ? ? C4 A DA 5 ? ? 106.32 110.60 -4.28 0.50 N 39 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 124.09 118.60 5.49 0.60 N 40 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 137.42 119.60 17.82 1.50 N 41 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 101.11 109.40 -8.29 0.80 N 42 1 P A DA 6 ? ? "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? 107.29 120.90 -13.61 1.60 N 43 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? "C1'" A DA 6 ? ? 96.42 102.40 -5.98 0.80 N 44 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? "C2'" A DA 6 ? ? 100.44 105.90 -5.46 0.80 N 45 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 132.31 129.30 3.01 0.50 N 46 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 111.76 119.70 -7.94 1.20 Y 47 1 "O3'" A DA 6 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 119.01 110.50 8.51 1.10 Y 48 1 "O5'" A DT 7 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 99.22 105.70 -6.48 0.90 N 49 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 98.13 109.40 -11.27 0.80 N 50 1 P A DT 7 ? ? "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? 110.22 120.90 -10.68 1.60 N 51 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? 101.77 104.50 -2.73 0.40 N 52 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.73 114.60 4.13 0.60 N 53 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.28 127.20 -5.92 0.60 N 54 1 C5 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 120.67 124.90 -4.23 0.70 N 55 1 P A DT 8 ? ? "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? 108.95 120.90 -11.95 1.60 N 56 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 100.20 105.90 -5.70 0.80 N 57 1 N1 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.95 123.10 -5.15 0.80 N 58 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 126.48 122.30 4.18 0.60 N 59 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 117.31 122.90 -5.59 0.60 N 60 1 "O3'" A DT 8 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 90.97 105.20 -14.23 2.20 Y 61 1 "O5'" A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 127.37 110.70 16.67 1.20 N 62 1 P A DC 9 ? ? "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? 102.05 120.90 -18.85 1.60 N 63 1 "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? "O4'" A DC 9 ? ? 120.75 109.80 10.95 1.10 N 64 1 "C4'" A DC 9 ? ? "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? 94.37 102.20 -7.83 0.70 N 65 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 97.32 105.90 -8.58 0.80 N 66 1 N3 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 123.48 118.00 5.48 0.70 N 67 1 C5 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 115.37 120.20 -4.83 0.70 N 68 1 "C3'" A DC 9 ? ? "O3'" A DC 9 ? ? P A DA 10 ? ? 131.35 119.70 11.65 1.20 Y 69 1 OP1 A DA 10 ? ? P A DA 10 ? ? OP2 A DA 10 ? ? 128.88 119.60 9.28 1.50 N 70 1 "O5'" A DA 10 ? ? "C5'" A DA 10 ? ? "C4'" A DA 10 ? ? 103.20 109.40 -6.20 0.80 N 71 1 "C3'" A DA 10 ? ? "C2'" A DA 10 ? ? "C1'" A DA 10 ? ? 96.43 102.40 -5.97 0.80 N 72 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 119.30 108.30 11.00 0.30 N 73 1 N1 A DA 10 ? ? C2 A DA 10 ? ? N3 A DA 10 ? ? 125.45 129.30 -3.85 0.50 N 74 1 OP1 A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 109.64 119.60 -9.96 1.50 N 75 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 125.30 110.70 14.60 1.20 N 76 1 "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 103.65 109.40 -5.75 0.80 N 77 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 109.49 120.90 -11.41 1.60 N 78 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 96.02 102.40 -6.38 0.80 N 79 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 97.60 105.90 -8.30 0.80 N 80 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 100.69 108.00 -7.31 0.70 N 81 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 123.35 118.00 5.35 0.70 N 82 1 C5 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 114.39 120.20 -5.81 0.70 N 83 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP1 A DG 12 ? ? 119.59 110.70 8.89 1.20 N 84 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 116.12 108.30 7.82 0.30 N 85 1 C6 A DG 12 ? ? N1 A DG 12 ? ? C2 A DG 12 ? ? 120.11 125.10 -4.99 0.60 N 86 1 N1 A DG 12 ? ? C2 A DG 12 ? ? N3 A DG 12 ? ? 130.20 123.90 6.30 0.60 N 87 1 C2 A DG 12 ? ? N3 A DG 12 ? ? C4 A DG 12 ? ? 106.00 111.90 -5.90 0.50 N 88 1 N3 A DG 12 ? ? C2 A DG 12 ? ? N2 A DG 12 ? ? 113.33 119.90 -6.57 0.70 N 89 1 N1 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 124.18 119.90 4.28 0.60 N 90 1 C5 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 122.32 128.60 -6.28 0.60 N 91 1 "O4'" B DC 13 ? ? "C4'" B DC 13 ? ? "C3'" B DC 13 ? ? 101.33 104.50 -3.17 0.40 N 92 1 "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? "O4'" B DC 13 ? ? 119.17 109.80 9.37 1.10 N 93 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 119.02 108.30 10.72 0.30 N 94 1 C5 B DC 13 ? ? C6 B DC 13 ? ? N1 B DC 13 ? ? 124.63 121.00 3.63 0.50 N 95 1 "O3'" B DC 13 ? ? P B DG 14 ? ? OP1 B DG 14 ? ? 119.31 110.50 8.81 1.10 Y 96 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 100.73 119.60 -18.87 1.50 N 97 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 130.34 110.70 19.64 1.20 N 98 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 116.84 108.30 8.54 0.30 N 99 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 120.74 125.10 -4.36 0.60 N 100 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 128.13 123.90 4.23 0.60 N 101 1 N1 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 127.23 119.90 7.33 0.60 N 102 1 C5 B DG 14 ? ? C6 B DG 14 ? ? O6 B DG 14 ? ? 119.79 128.60 -8.81 0.60 N 103 1 OP1 B DT 15 ? ? P B DT 15 ? ? OP2 B DT 15 ? ? 128.98 119.60 9.38 1.50 N 104 1 "O5'" B DT 15 ? ? "C5'" B DT 15 ? ? "C4'" B DT 15 ? ? 99.61 109.40 -9.79 0.80 N 105 1 "O4'" B DT 15 ? ? "C4'" B DT 15 ? ? "C3'" B DT 15 ? ? 101.80 104.50 -2.70 0.40 N 106 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 99.78 108.00 -8.22 0.70 N 107 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 118.35 114.60 3.75 0.60 N 108 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 119.62 127.20 -7.58 0.60 N 109 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 120.75 115.20 5.55 0.60 N 110 1 N1 B DT 15 ? ? C2 B DT 15 ? ? O2 B DT 15 ? ? 116.85 123.10 -6.25 0.80 N 111 1 C5 B DT 15 ? ? C4 B DT 15 ? ? O4 B DT 15 ? ? 118.94 124.90 -5.96 0.70 N 112 1 "O3'" B DT 15 ? ? P B DG 16 ? ? "O5'" B DG 16 ? ? 89.77 104.00 -14.23 1.90 Y 113 1 OP1 B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 129.47 119.60 9.87 1.50 N 114 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 102.35 109.40 -7.05 0.80 N 115 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? 96.19 102.20 -6.01 0.70 N 116 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 97.06 102.40 -5.34 0.80 N 117 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.52 108.30 5.22 0.30 N 118 1 C6 B DG 16 ? ? N1 B DG 16 ? ? C2 B DG 16 ? ? 118.78 125.10 -6.32 0.60 N 119 1 N1 B DG 16 ? ? C2 B DG 16 ? ? N3 B DG 16 ? ? 129.05 123.90 5.15 0.60 N 120 1 C5 B DG 16 ? ? C6 B DG 16 ? ? N1 B DG 16 ? ? 114.74 111.50 3.24 0.50 N 121 1 N1 B DG 16 ? ? C2 B DG 16 ? ? N2 B DG 16 ? ? 110.63 116.20 -5.57 0.90 N 122 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 96.77 119.60 -22.83 1.50 N 123 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP1 B DA 17 ? ? 127.46 110.70 16.76 1.20 N 124 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 108.04 120.90 -12.86 1.60 N 125 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? "O4'" B DA 17 ? ? 120.20 109.80 10.40 1.10 N 126 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 93.59 102.20 -8.61 0.70 N 127 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 96.10 105.90 -9.80 0.80 N 128 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 114.40 108.30 6.10 0.30 N 129 1 C4 B DA 17 ? ? C5 B DA 17 ? ? C6 B DA 17 ? ? 120.81 117.00 3.81 0.50 N 130 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 114.35 117.70 -3.35 0.50 N 131 1 "O3'" B DA 17 ? ? P B DA 18 ? ? "O5'" B DA 18 ? ? 84.62 104.00 -19.38 1.90 Y 132 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 97.49 104.50 -7.01 0.40 N 133 1 "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? "O4'" B DA 18 ? ? 121.59 109.80 11.79 1.10 N 134 1 "C1'" B DA 18 ? ? "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 115.48 110.30 5.18 0.70 N 135 1 "C3'" B DA 18 ? ? "C2'" B DA 18 ? ? "C1'" B DA 18 ? ? 94.99 102.40 -7.41 0.80 N 136 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 94.66 105.90 -11.24 0.80 N 137 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 112.90 108.30 4.60 0.30 N 138 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 123.30 118.60 4.70 0.60 N 139 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 122.73 129.30 -6.57 0.50 N 140 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 114.17 110.60 3.57 0.50 N 141 1 C8 B DA 18 ? ? N9 B DA 18 ? ? C4 B DA 18 ? ? 102.89 105.80 -2.91 0.40 N 142 1 "O3'" B DA 18 ? ? P B DT 19 ? ? "O5'" B DT 19 ? ? 82.08 104.00 -21.92 1.90 Y 143 1 OP1 B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 140.82 119.60 21.22 1.50 N 144 1 "O5'" B DT 19 ? ? P B DT 19 ? ? OP1 B DT 19 ? ? 98.14 105.70 -7.56 0.90 N 145 1 P B DT 19 ? ? "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? 108.57 120.90 -12.33 1.60 N 146 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 117.96 127.20 -9.24 0.60 N 147 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 123.06 115.20 7.86 0.60 N 148 1 C5 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 120.20 124.90 -4.70 0.70 N 149 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 126.97 122.90 4.07 0.60 N 150 1 "O5'" B DT 20 ? ? "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? 100.74 109.40 -8.66 0.80 N 151 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 100.19 108.00 -7.81 0.70 N 152 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 122.60 127.20 -4.60 0.60 N 153 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 119.70 115.20 4.50 0.60 N 154 1 C5 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 119.27 124.90 -5.63 0.70 N 155 1 C4 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 114.45 119.00 -4.55 0.60 N 156 1 C6 B DT 20 ? ? C5 B DT 20 ? ? C7 B DT 20 ? ? 128.32 122.90 5.42 0.60 N 157 1 OP1 B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 129.93 119.60 10.33 1.50 N 158 1 "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? 101.31 109.40 -8.09 0.80 N 159 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 102.99 108.00 -5.01 0.70 N 160 1 C6 B DC 21 ? ? N1 B DC 21 ? ? C2 B DC 21 ? ? 127.11 120.30 6.81 0.40 N 161 1 N1 B DC 21 ? ? C2 B DC 21 ? ? N3 B DC 21 ? ? 114.08 119.20 -5.12 0.70 N 162 1 N3 B DC 21 ? ? C4 B DC 21 ? ? C5 B DC 21 ? ? 125.98 121.90 4.08 0.40 N 163 1 C4 B DC 21 ? ? C5 B DC 21 ? ? C6 B DC 21 ? ? 112.88 117.40 -4.52 0.50 N 164 1 C2 B DC 21 ? ? N1 B DC 21 ? ? "C1'" B DC 21 ? ? 110.05 118.80 -8.75 1.10 N 165 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DA 22 ? ? 132.81 119.70 13.11 1.20 Y 166 1 "O3'" B DC 21 ? ? P B DA 22 ? ? OP2 B DA 22 ? ? 124.58 110.50 14.08 1.10 Y 167 1 OP1 B DA 22 ? ? P B DA 22 ? ? OP2 B DA 22 ? ? 103.46 119.60 -16.14 1.50 N 168 1 "O5'" B DA 22 ? ? P B DA 22 ? ? OP2 B DA 22 ? ? 129.37 110.70 18.67 1.20 N 169 1 P B DA 22 ? ? "O5'" B DA 22 ? ? "C5'" B DA 22 ? ? 133.57 120.90 12.67 1.60 N 170 1 "O4'" B DA 22 ? ? "C4'" B DA 22 ? ? "C3'" B DA 22 ? ? 98.28 104.50 -6.22 0.40 N 171 1 "C3'" B DA 22 ? ? "C2'" B DA 22 ? ? "C1'" B DA 22 ? ? 94.90 102.40 -7.50 0.80 N 172 1 "O4'" B DA 22 ? ? "C1'" B DA 22 ? ? N9 B DA 22 ? ? 122.21 108.30 13.91 0.30 N 173 1 C4 B DA 22 ? ? C5 B DA 22 ? ? C6 B DA 22 ? ? 120.26 117.00 3.26 0.50 N 174 1 C5 B DA 22 ? ? C6 B DA 22 ? ? N1 B DA 22 ? ? 113.70 117.70 -4.00 0.50 N 175 1 N1 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 127.44 118.60 8.84 0.60 N 176 1 C5 B DA 22 ? ? C6 B DA 22 ? ? N6 B DA 22 ? ? 118.86 123.70 -4.84 0.80 N 177 1 "O3'" B DA 22 ? ? P B DC 23 ? ? "O5'" B DC 23 ? ? 87.51 104.00 -16.49 1.90 Y 178 1 "O5'" B DC 23 ? ? P B DC 23 ? ? OP2 B DC 23 ? ? 122.14 110.70 11.44 1.20 N 179 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? "O4'" B DC 23 ? ? 117.51 109.80 7.71 1.10 N 180 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 128.55 108.30 20.25 0.30 N 181 1 C6 B DC 23 ? ? N1 B DC 23 ? ? C2 B DC 23 ? ? 117.36 120.30 -2.94 0.40 N 182 1 C5 B DC 23 ? ? C6 B DC 23 ? ? N1 B DC 23 ? ? 124.26 121.00 3.26 0.50 N 183 1 C6 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 129.13 120.80 8.33 1.20 N 184 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 98.56 109.40 -10.84 0.80 N 185 1 P B DG 24 ? ? "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? 107.37 120.90 -13.53 1.60 N 186 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 101.65 104.50 -2.85 0.40 N 187 1 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 96.52 102.20 -5.68 0.70 N 188 1 N9 B DG 24 ? ? C4 B DG 24 ? ? C5 B DG 24 ? ? 108.06 105.40 2.66 0.40 N 189 1 N3 B DG 24 ? ? C2 B DG 24 ? ? N2 B DG 24 ? ? 114.97 119.90 -4.93 0.70 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1D29 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.396 -0.148 -0.101 3.493 -11.837 -6.692 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.253 -0.325 0.044 -7.026 -13.598 -11.802 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 -0.173 -0.561 0.188 -5.645 -10.969 -7.793 3 A_DT3:DA22_B A 3 ? B 22 ? 20 1 1 A DG 4 1_555 B DC 9 1_555 -0.527 -0.562 -0.122 7.209 -11.466 -0.335 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.680 -0.380 -0.265 4.260 -12.171 6.812 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.084 0.060 -0.011 2.831 -18.583 -3.002 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.414 -0.008 -0.229 0.947 -21.345 2.338 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.321 -0.470 -0.134 0.659 -18.327 5.650 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.393 -0.412 -0.350 -8.387 -18.680 -3.770 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DA 10 1_555 B DT 3 1_555 0.092 -0.279 0.333 -0.231 -15.295 5.494 10 A_DA10:DT15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 -0.171 -0.440 0.515 3.348 -16.270 -8.103 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.118 -0.467 0.117 3.307 -4.505 -7.902 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.385 -0.054 3.574 -4.336 8.803 42.873 -0.988 0.064 3.519 11.858 5.840 43.930 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DT 3 1_555 B DA 10 1_555 -0.012 -0.135 3.423 -0.953 -0.961 34.342 -0.072 -0.136 3.425 -1.627 1.613 34.368 2 AA_DG2DT3:DA22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DG 4 1_555 B DC 9 1_555 0.219 0.589 3.199 0.066 5.347 27.464 -0.044 -0.438 3.254 11.128 -0.137 27.970 3 AA_DT3DG4:DC21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.067 0.454 3.317 0.080 1.510 42.647 0.470 0.100 3.330 2.076 -0.110 42.672 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.480 -0.112 3.262 -2.024 1.257 34.954 -0.376 0.493 3.278 2.090 3.365 35.032 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.372 -0.631 3.296 3.143 0.087 35.034 -1.057 -0.141 3.314 0.145 -5.208 35.171 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.074 0.014 3.279 0.853 -0.345 34.240 0.078 0.009 3.280 -0.586 -1.449 34.252 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.284 0.061 3.351 3.316 -0.534 43.231 0.135 0.713 3.321 -0.723 -4.493 43.355 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DA 10 1_555 B DT 3 1_555 0.724 1.041 3.310 -4.822 4.798 26.792 0.988 -2.713 3.265 10.148 10.199 27.627 9 AA_DC9DA10:DT15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DA 10 1_555 B DT 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.465 0.228 3.354 -5.261 -7.409 37.459 1.310 1.536 3.417 -11.333 8.048 38.507 10 AA_DA10DC11:DG14DT15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.547 0.083 3.450 4.110 -0.235 36.610 0.166 -0.272 3.488 -0.372 -6.517 36.833 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1D29 _atom_sites.fract_transf_matrix[1][1] 0.040096 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024522 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015122 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_