HEADER GENE REGULATION/DNA 01-OCT-99 1D3U TITLE TATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX TITLE 2 FROM PYROCOCCUS WOESEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA 24-MER: BRE+TATA-BOX; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA 23-MER: BRE+TATA-BOX; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TATA-BINDING PROTEIN; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RESIDUES 1-180; COMPND 13 SYNONYM: TATA-BOX FACTOR, TATA SEQUENCE-BINDING PROTEIN, TBP; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIB; COMPND 17 CHAIN: B; COMPND 18 FRAGMENT: C-TERMINAL CORE, RESIDUES 62-261; COMPND 19 SYNONYM: TFIIB; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: PYROCOCCUS WOESEI; SOURCE 7 ORGANISM_TAXID: 2262; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: PYROCOCCUS WOESEI; SOURCE 14 ORGANISM_TAXID: 2262; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION, HYPERTHERMOPHILE, GENE KEYWDS 2 REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.LITTLEFIELD,Y.KORKHIN,P.B.SIGLER REVDAT 3 03-NOV-21 1D3U 1 SEQADV REVDAT 2 24-FEB-09 1D3U 1 VERSN REVDAT 1 15-NOV-99 1D3U 0 JRNL AUTH O.LITTLEFIELD,Y.KORKHIN,P.B.SIGLER JRNL TITL THE STRUCTURAL BASIS FOR THE ORIENTED ASSEMBLY OF A JRNL TITL 2 TBP/TFB/PROMOTER COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 13668 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10570130 JRNL DOI 10.1073/PNAS.96.24.13668 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.D.BELL,P.L.KOSA,P.B.SIGLER,S.P.JACKSON REMARK 1 TITL THE ORIENTATION OF THE TRANSCRIPTION PREINITIATION COMPLEX REMARK 1 TITL 2 IN ARCHAEA REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 1999 REMARK 1 REFN ESSN 1091-6490 REMARK 1 DOI 10.1073/PNAS.96.24.13662 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.F.KOSA,G.GHOSH,B.S.DEDECKER,P.B.SIGLER REMARK 1 TITL THE 2.1-ANGSTROM CRYSTAL STRUCTURE OF AN ARCHAEAL REMARK 1 TITL 2 PREINITIATION COMPLEX: TATA- BOX-BINDING REMARK 1 TITL 3 PROTEIN/TRANSCRIPTION FACTOR (II)B CORE/TATA-BOX REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 94 6042 1997 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.94.12.6042 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.A.QURESHI,S.P.JACKSON REMARK 1 TITL SEQUENCE-SPECIFIC DNA BINDING BY THE S. SHIBATAE TFIIB REMARK 1 TITL 2 HOMOLOG, TFB, AND ITS EFFECT ON PROMOTER STRENGTH REMARK 1 REF MOL.CELL V. 1 389 1998 REMARK 1 REFN ISSN 1097-2765 REMARK 1 DOI 10.1016/S1097-2765(00)80039-8 REMARK 1 REFERENCE 4 REMARK 1 AUTH T.LAGRANGE,A.N.KAPANIDIS,H.TANG,D.REINBERG,R.H.EBRIGHT REMARK 1 TITL NEW CORE PROMOTER ELEMENT IN RNA POLYMERASE II-DEPENDENT REMARK 1 TITL 2 TRANSCRIPTION: SEQUENCE-SPECIFIC DNA BINDING BY REMARK 1 TITL 3 TRANSCRIPTION FACTOR IIB REMARK 1 REF GENES DEV. V. 12 34 1998 REMARK 1 REFN ISSN 0890-9369 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 33798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3323 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3010 REMARK 3 NUCLEIC ACID ATOMS : 957 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, STRONTIUM CHLORIDE, SODIUM REMARK 280 CITRATE, TRIS, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 87.10000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 87.10000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 87.10000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 87.10000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 87.10000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 87.10000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 87.10000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 87.10000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 87.10000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 87.10000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 87.10000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 87.10000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 87.10000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 272 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG B 1170 O HOH B 222 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4' DT D 1426 O4' DT D 1426 16546 2.09 REMARK 500 NH1 ARG A 172 NH1 ARG A 172 15556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C1401 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG C1402 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC C1418 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC D1440 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 PRO A 53 C - N - CA ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 61.62 70.14 REMARK 500 ALA A 22 128.31 175.96 REMARK 500 PRO A 34 -80.88 -54.25 REMARK 500 ASN A 35 95.98 -62.83 REMARK 500 ASN A 39 75.76 -157.88 REMARK 500 PRO A 44 -8.40 -58.11 REMARK 500 ASP A 52 -88.77 -59.82 REMARK 500 GLN A 85 -76.16 -52.86 REMARK 500 LYS A 86 -27.16 -39.91 REMARK 500 ILE A 90 16.37 -141.59 REMARK 500 PRO B1169 50.99 -62.97 REMARK 500 LYS B1265 139.58 -28.23 REMARK 500 LYS B1294 72.35 45.19 REMARK 500 PRO B1298 -83.67 -46.08 REMARK 500 ILE B1299 -145.77 -139.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C1409 0.07 SIDE CHAIN REMARK 500 DA C1414 0.07 SIDE CHAIN REMARK 500 DA C1415 0.07 SIDE CHAIN REMARK 500 DC C1418 0.08 SIDE CHAIN REMARK 500 DG D1431 0.06 SIDE CHAIN REMARK 500 DT D1432 0.09 SIDE CHAIN REMARK 500 DC D1445 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1D3U A 1 181 UNP P62001 TBP_PYRWO 1 181 DBREF 1D3U B 1100 1300 UNP P61999 TF2B_PYRWO 61 261 DBREF 1D3U C 1401 1424 PDB 1D3U 1D3U 1401 1424 DBREF 1D3U D 1426 1448 PDB 1D3U 1D3U 1426 1448 SEQADV 1D3U MET B 1100 UNP P61999 ARG 61 ENGINEERED MUTATION SEQRES 1 C 24 DA DG DA DG DT DA DA DA DG DT DT DT DA SEQRES 2 C 24 DA DA DT DA DC DT DT DA DT DA DT SEQRES 1 D 23 DT DA DT DA DA DG DT DA DT DT DT DA DA SEQRES 2 D 23 DA DC DT DT DT DA DC DT DC DT SEQRES 1 A 181 MET VAL ASP MET SER LYS VAL LYS LEU ARG ILE GLU ASN SEQRES 2 A 181 ILE VAL ALA SER VAL ASP LEU PHE ALA GLN LEU ASP LEU SEQRES 3 A 181 GLU LYS VAL LEU ASP LEU CYS PRO ASN SER LYS TYR ASN SEQRES 4 A 181 PRO GLU GLU PHE PRO GLY ILE ILE CYS HIS LEU ASP ASP SEQRES 5 A 181 PRO LYS VAL ALA LEU LEU ILE PHE SER SER GLY LYS LEU SEQRES 6 A 181 VAL VAL THR GLY ALA LYS SER VAL GLN ASP ILE GLU ARG SEQRES 7 A 181 ALA VAL ALA LYS LEU ALA GLN LYS LEU LYS SER ILE GLY SEQRES 8 A 181 VAL LYS PHE LYS ARG ALA PRO GLN ILE ASP VAL GLN ASN SEQRES 9 A 181 MET VAL PHE SER GLY ASP ILE GLY ARG GLU PHE ASN LEU SEQRES 10 A 181 ASP VAL VAL ALA LEU THR LEU PRO ASN CYS GLU TYR GLU SEQRES 11 A 181 PRO GLU GLN PHE PRO GLY VAL ILE TYR ARG VAL LYS GLU SEQRES 12 A 181 PRO LYS SER VAL ILE LEU LEU PHE SER SER GLY LYS ILE SEQRES 13 A 181 VAL CYS SER GLY ALA LYS SER GLU ALA ASP ALA TRP GLU SEQRES 14 A 181 ALA VAL ARG LYS LEU LEU ARG GLU LEU ASP LYS TYR SEQRES 1 B 201 MET VAL SER ASP ALA ALA GLU ARG ASN LEU ALA PHE ALA SEQRES 2 B 201 LEU SER GLU LEU ASP ARG ILE THR ALA GLN LEU LYS LEU SEQRES 3 B 201 PRO ARG HIS VAL GLU GLU GLU ALA ALA ARG LEU TYR ARG SEQRES 4 B 201 GLU ALA VAL ARG LYS GLY LEU ILE ARG GLY ARG SER ILE SEQRES 5 B 201 GLU SER VAL MET ALA ALA CYS VAL TYR ALA ALA CYS ARG SEQRES 6 B 201 LEU LEU LYS VAL PRO ARG THR LEU ASP GLU ILE ALA ASP SEQRES 7 B 201 ILE ALA ARG VAL ASP LYS LYS GLU ILE GLY ARG SER TYR SEQRES 8 B 201 ARG PHE ILE ALA ARG ASN LEU ASN LEU THR PRO LYS LYS SEQRES 9 B 201 LEU PHE VAL LYS PRO THR ASP TYR VAL ASN LYS PHE ALA SEQRES 10 B 201 ASP GLU LEU GLY LEU SER GLU LYS VAL ARG ARG ARG ALA SEQRES 11 B 201 ILE GLU ILE LEU ASP GLU ALA TYR LYS ARG GLY LEU THR SEQRES 12 B 201 SER GLY LYS SER PRO ALA GLY LEU VAL ALA ALA ALA LEU SEQRES 13 B 201 TYR ILE ALA SER LEU LEU GLU GLY GLU LYS ARG THR GLN SEQRES 14 B 201 ARG GLU VAL ALA GLU VAL ALA ARG VAL THR GLU VAL THR SEQRES 15 B 201 VAL ARG ASN ARG TYR LYS GLU LEU VAL GLU LYS LEU LYS SEQRES 16 B 201 ILE LYS VAL PRO ILE ALA FORMUL 5 HOH *180(H2 O) HELIX 1 5 ASP B 1103 LYS B 1124 1 22 HELIX 2 6 PRO B 1126 LYS B 1143 1 18 HELIX 3 7 SER B 1150 LYS B 1167 1 18 HELIX 4 8 THR B 1171 ALA B 1179 1 9 HELIX 5 9 ASP B 1182 LEU B 1197 1 16 HELIX 6 10 THR B 1200 PHE B 1205 1 6 HELIX 7 11 LYS B 1207 GLY B 1220 1 14 HELIX 8 12 SER B 1222 ARG B 1239 1 18 HELIX 9 13 SER B 1246 GLU B 1262 1 17 HELIX 10 14 THR B 1267 ARG B 1276 1 10 HELIX 11 15 THR B 1278 LEU B 1293 1 16 SHEET 1 A10 SER A 36 ASN A 39 0 SHEET 2 A10 PHE A 43 HIS A 49 -1 N PHE A 43 O ASN A 39 SHEET 3 A10 ALA A 56 ILE A 59 -1 N LEU A 57 O CYS A 48 SHEET 4 A10 LYS A 64 ALA A 70 -1 O VAL A 66 N LEU A 58 SHEET 5 A10 LYS A 8 ASP A 19 -1 O ILE A 14 N ALA A 70 SHEET 6 A10 GLN A 99 ASP A 110 -1 O GLN A 99 N ASP A 19 SHEET 7 A10 LYS A 155 ALA A 161 -1 N ILE A 156 O GLY A 109 SHEET 8 A10 SER A 146 LEU A 150 -1 O VAL A 147 N SER A 159 SHEET 9 A10 VAL A 137 VAL A 141 -1 N VAL A 137 O LEU A 150 SHEET 10 A10 CYS A 127 GLU A 128 -1 O GLU A 128 N ILE A 138 SSBOND 1 CYS A 33 CYS A 48 1555 1555 2.04 CISPEP 1 GLU A 143 PRO A 144 0 -0.34 CRYST1 174.200 174.200 174.200 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005741 0.00000