HEADER APOPTOSIS 02-OCT-99 1D4B TITLE CIDE-N DOMAIN OF HUMAN CIDE-B COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN CELL DEATH-INDUCING EFFECTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: CIDE B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA ROLL, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR A.LUGOVSKOY,P.ZHOU,J.CHOU,J.MCCARTY,P.LI,G.WAGNER REVDAT 6 22-MAY-24 1D4B 1 REMARK REVDAT 5 16-FEB-22 1D4B 1 REMARK REVDAT 4 24-FEB-09 1D4B 1 VERSN REVDAT 3 01-APR-03 1D4B 1 JRNL REVDAT 2 05-APR-00 1D4B 1 JRNL REVDAT 1 17-DEC-99 1D4B 0 JRNL AUTH A.A.LUGOVSKOY,P.ZHOU,J.J.CHOU,J.S.MCCARTY,P.LI,G.WAGNER JRNL TITL SOLUTION STRUCTURE OF THE CIDE-N DOMAIN OF CIDE-B AND A JRNL TITL 2 MODEL FOR CIDE-N/CIDE-N INTERACTIONS IN THE DNA JRNL TITL 3 FRAGMENTATION PATHWAY OF APOPTOSIS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 99 747 1999 JRNL REFN ISSN 0092-8674 JRNL PMID 10619428 JRNL DOI 10.1016/S0092-8674(00)81672-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.18 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D4B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009775. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5MM CIDE-N OF CIDE-B REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : A MINIMAL SET OF NMR EXPERIMENTS REMARK 210 REQUIRED FOR HIGH-RESOLUTION REMARK 210 STRUCTURE DETERMINATION REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; UNITY; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING TORSION ANGLE DYNAMICS REMARK 210 RELAXATION DATA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING MULTIDIMENTIONAL NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 -168.95 -101.63 REMARK 500 1 LEU A 4 -61.02 -123.56 REMARK 500 1 LEU A 7 57.67 -165.35 REMARK 500 1 ASP A 11 -58.84 -164.43 REMARK 500 1 LEU A 12 37.93 -144.08 REMARK 500 1 ARG A 14 35.31 -145.47 REMARK 500 1 PHE A 23 75.65 -167.15 REMARK 500 1 ARG A 25 -38.54 -136.16 REMARK 500 1 HIS A 43 -86.84 -34.86 REMARK 500 1 LYS A 44 -69.94 -92.63 REMARK 500 1 ARG A 45 15.84 -153.91 REMARK 500 1 ARG A 56 -77.20 -90.72 REMARK 500 1 LEU A 64 -72.13 -77.09 REMARK 500 1 ASP A 85 24.88 -145.42 REMARK 500 1 PHE A 89 -77.12 -46.77 REMARK 500 1 LEU A 116 -167.61 -61.75 REMARK 500 1 HIS A 120 -39.02 -169.93 REMARK 500 2 ALA A 6 -135.45 -92.70 REMARK 500 2 LEU A 7 -63.80 -91.57 REMARK 500 2 ASP A 11 84.70 -167.87 REMARK 500 2 SER A 17 71.40 -160.73 REMARK 500 2 ILE A 19 71.02 176.61 REMARK 500 2 SER A 30 -154.75 -84.78 REMARK 500 2 ALA A 31 71.23 -119.81 REMARK 500 2 HIS A 43 -86.91 -36.37 REMARK 500 2 LYS A 44 -70.06 -92.71 REMARK 500 2 ARG A 45 16.46 -154.03 REMARK 500 2 ARG A 56 -80.38 -90.32 REMARK 500 2 SER A 113 -44.41 -152.27 REMARK 500 2 HIS A 120 -167.78 -72.16 REMARK 500 3 SER A 5 48.65 -154.48 REMARK 500 3 LEU A 7 -60.45 -140.14 REMARK 500 3 SER A 10 -153.87 -166.08 REMARK 500 3 LEU A 12 53.74 -101.01 REMARK 500 3 SER A 15 90.68 -161.07 REMARK 500 3 ILE A 19 -37.29 176.57 REMARK 500 3 GLU A 22 58.83 -109.56 REMARK 500 3 TRP A 28 -67.59 -122.70 REMARK 500 3 SER A 30 -46.77 -145.56 REMARK 500 3 HIS A 43 -86.27 -35.02 REMARK 500 3 LYS A 44 -69.82 -92.11 REMARK 500 3 ARG A 45 15.78 -153.90 REMARK 500 3 ARG A 56 -78.22 -90.57 REMARK 500 3 ASP A 85 21.10 -145.77 REMARK 500 3 PHE A 89 -76.07 -45.11 REMARK 500 3 SER A 104 164.92 -44.30 REMARK 500 3 SER A 113 -154.88 -156.28 REMARK 500 3 VAL A 115 82.68 52.93 REMARK 500 4 GLU A 2 -65.04 -166.48 REMARK 500 4 ALA A 6 -135.55 -159.43 REMARK 500 REMARK 500 THIS ENTRY HAS 259 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 14 0.22 SIDE CHAIN REMARK 500 1 ARG A 25 0.23 SIDE CHAIN REMARK 500 1 ARG A 26 0.22 SIDE CHAIN REMARK 500 1 ARG A 36 0.25 SIDE CHAIN REMARK 500 1 ARG A 39 0.31 SIDE CHAIN REMARK 500 1 ARG A 45 0.22 SIDE CHAIN REMARK 500 1 ARG A 48 0.25 SIDE CHAIN REMARK 500 1 ARG A 56 0.27 SIDE CHAIN REMARK 500 1 ARG A 112 0.25 SIDE CHAIN REMARK 500 2 ARG A 14 0.28 SIDE CHAIN REMARK 500 2 ARG A 25 0.24 SIDE CHAIN REMARK 500 2 ARG A 26 0.28 SIDE CHAIN REMARK 500 2 ARG A 36 0.31 SIDE CHAIN REMARK 500 2 ARG A 39 0.25 SIDE CHAIN REMARK 500 2 ARG A 45 0.28 SIDE CHAIN REMARK 500 2 ARG A 48 0.28 SIDE CHAIN REMARK 500 2 ARG A 56 0.24 SIDE CHAIN REMARK 500 2 ARG A 112 0.29 SIDE CHAIN REMARK 500 3 ARG A 14 0.25 SIDE CHAIN REMARK 500 3 ARG A 25 0.30 SIDE CHAIN REMARK 500 3 ARG A 26 0.28 SIDE CHAIN REMARK 500 3 ARG A 36 0.22 SIDE CHAIN REMARK 500 3 ARG A 39 0.31 SIDE CHAIN REMARK 500 3 ARG A 45 0.26 SIDE CHAIN REMARK 500 3 ARG A 48 0.28 SIDE CHAIN REMARK 500 3 ARG A 56 0.28 SIDE CHAIN REMARK 500 3 ARG A 112 0.26 SIDE CHAIN REMARK 500 4 ARG A 14 0.30 SIDE CHAIN REMARK 500 4 ARG A 25 0.31 SIDE CHAIN REMARK 500 4 ARG A 26 0.24 SIDE CHAIN REMARK 500 4 ARG A 36 0.22 SIDE CHAIN REMARK 500 4 ARG A 39 0.32 SIDE CHAIN REMARK 500 4 ARG A 45 0.29 SIDE CHAIN REMARK 500 4 ARG A 48 0.26 SIDE CHAIN REMARK 500 4 ARG A 56 0.29 SIDE CHAIN REMARK 500 4 ARG A 112 0.31 SIDE CHAIN REMARK 500 5 ARG A 14 0.32 SIDE CHAIN REMARK 500 5 ARG A 25 0.25 SIDE CHAIN REMARK 500 5 ARG A 26 0.24 SIDE CHAIN REMARK 500 5 ARG A 36 0.32 SIDE CHAIN REMARK 500 5 ARG A 39 0.28 SIDE CHAIN REMARK 500 5 ARG A 45 0.32 SIDE CHAIN REMARK 500 5 ARG A 48 0.32 SIDE CHAIN REMARK 500 5 ARG A 56 0.25 SIDE CHAIN REMARK 500 5 ARG A 112 0.25 SIDE CHAIN REMARK 500 6 ARG A 14 0.25 SIDE CHAIN REMARK 500 6 ARG A 25 0.28 SIDE CHAIN REMARK 500 6 ARG A 26 0.30 SIDE CHAIN REMARK 500 6 ARG A 36 0.30 SIDE CHAIN REMARK 500 6 ARG A 39 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 135 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1D4B A 1 116 UNP Q9UHD4 CIDEB_HUMAN 1 116 SEQRES 1 A 122 MET GLU TYR LEU SER ALA LEU ASN PRO SER ASP LEU LEU SEQRES 2 A 122 ARG SER VAL SER ASN ILE SER SER GLU PHE GLY ARG ARG SEQRES 3 A 122 VAL TRP THR SER ALA PRO PRO PRO GLN ARG PRO PHE ARG SEQRES 4 A 122 VAL CYS ASP HIS LYS ARG THR ILE ARG LYS GLY LEU THR SEQRES 5 A 122 ALA ALA THR ARG GLN GLU LEU LEU ALA LYS ALA LEU GLU SEQRES 6 A 122 THR LEU LEU LEU ASN GLY VAL LEU THR LEU VAL LEU GLU SEQRES 7 A 122 GLU ASP GLY THR ALA VAL ASP SER GLU ASP PHE PHE GLN SEQRES 8 A 122 LEU LEU GLU ASP ASP THR CYS LEU MET VAL LEU GLN SER SEQRES 9 A 122 GLY GLN SER TRP SER PRO THR ARG SER GLY VAL LEU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS HELIX 1 1 GLU A 58 LEU A 68 1 11 HELIX 2 2 GLU A 87 LEU A 93 1 7 SHEET 1 A 2 ARG A 36 CYS A 41 0 SHEET 2 A 2 ARG A 48 ALA A 53 -1 O LYS A 49 N VAL A 40 SHEET 1 B 3 THR A 82 VAL A 84 0 SHEET 2 B 3 THR A 74 LEU A 77 -1 O LEU A 75 N VAL A 84 SHEET 3 B 3 VAL A 101 LEU A 102 -1 N LEU A 102 O THR A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1