HEADER HYDROLASE 07-OCT-99 1D5G TITLE SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE HPTP1E TITLE 2 COMPLEXED WITH A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN PHOSPHATASE HPTP1E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ2 DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE FADSEADENEQVSAV; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. KEYWDS PROTEIN-PEPTIDE COMPLEX, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.KOZLOV,K.GEHRING,I.EKIEL REVDAT 3 16-FEB-22 1D5G 1 REMARK REVDAT 2 24-FEB-09 1D5G 1 VERSN REVDAT 1 24-JUL-02 1D5G 0 JRNL AUTH G.KOZLOV,D.BANVILLE,K.GEHRING,I.EKIEL JRNL TITL SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM CYTOSOLIC HUMAN JRNL TITL 2 PHOSPHATASE HPTP1E COMPLEXED WITH A PEPTIDE REVEALS JRNL TITL 3 CONTRIBUTION OF THE BETA2-BETA3 LOOP TO PDZ DOMAIN-LIGAND JRNL TITL 4 INTERACTIONS JRNL REF J.MOL.BIOL. V. 320 813 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12095257 JRNL DOI 10.1016/S0022-2836(02)00544-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.KOZLOV,K.GEHRING,I.EKIEL REMARK 1 TITL SOLUTION STRUCTURE OF THE PDZ2 DOMAIN FROM HUMAN PHOSPHATASE REMARK 1 TITL 2 HPTP1E AND ITS INTERACTIONS WITH C-TERMINAL PEPTIDES FROM REMARK 1 TITL 3 THE FAS RECEPTOR REMARK 1 REF BIOCHEMISTRY V. 39 2572 2000 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI991913C REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, ARIA 0.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE IS BASED ON A TOTAL OF 1391 NON-REDUNDANT REMARK 3 CONSTRAINTS, 1269 ARE REMARK 3 NOE-DERIVED DISTANCE CONSTRAINTS, 81 DIHEDRAL ANGLE RESTRAINTS, 41 REMARK 3 HYDROGEN REMARK 3 BOND CONSTRAINTS. REMARK 4 REMARK 4 1D5G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009806. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293; 293; 293 REMARK 210 PH : 6.8; 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 0.15 M NACL; 0.15 M NACL; 0.15 M REMARK 210 NACL; 0.15 M NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0-5.0 MM OF N15-LABELED PDZ2 REMARK 210 DOMAIN WITH 20% MOLAR EXCESS OF REMARK 210 UNLABELED PEPTIDE; 1.0-5.0 MM OF REMARK 210 UNLABELED PDZ2 DOMAIN WITH 20% REMARK 210 MOLAR EXCESS OF UNLABELED REMARK 210 PEPTIDE; 1.0-5.0 MM OF UNLABELED REMARK 210 PDZ2 DOMAIN WITH 20% MOLAR REMARK 210 EXCESS OF UNLABELED PEPTIDE; 1.0- REMARK 210 5.0 MM OF DOUBLE-LABELED PDZ2 REMARK 210 DOMAIN WITH 20% MOLAR EXCESS OF REMARK 210 UNLABELED PEPTIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.0, XEASY 1.3.13, CNS 0.5, REMARK 210 ARIA 0.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY AND 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 3 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 4 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 57 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 7 TYR A 36 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 7 TYR A 36 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 9 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 10 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 12 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 13 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 13 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 15 ARG A 51 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 15 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 15 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 16 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 17 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 17 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 GLU B 5 CA - CB - CG ANGL. DEV. = 22.3 DEGREES REMARK 500 19 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 14 -81.89 -121.32 REMARK 500 1 ASN A 16 -139.10 -142.24 REMARK 500 1 SER A 17 -85.62 -85.49 REMARK 500 1 LEU A 18 -74.46 -101.18 REMARK 500 1 VAL A 26 -119.35 -87.27 REMARK 500 1 SER A 29 -69.05 -156.01 REMARK 500 1 ARG A 31 -92.10 -141.12 REMARK 500 1 HIS A 32 52.35 -117.58 REMARK 500 1 GLN A 43 -1.40 -141.70 REMARK 500 1 ARG A 51 -41.79 -137.18 REMARK 500 1 LEU A 59 -91.18 -121.15 REMARK 500 1 GLU A 67 99.80 -68.81 REMARK 500 1 THR A 81 -89.85 -109.06 REMARK 500 1 SER B 4 -78.04 -146.65 REMARK 500 1 GLU B 5 -69.22 -104.57 REMARK 500 1 ASN B 9 27.82 -151.25 REMARK 500 1 GLN B 11 -122.16 -133.58 REMARK 500 2 ASN A 14 -66.36 -92.29 REMARK 500 2 ASP A 15 -71.37 -88.70 REMARK 500 2 SER A 17 -71.19 -83.06 REMARK 500 2 LEU A 18 -83.27 -101.85 REMARK 500 2 SER A 29 -89.75 -155.39 REMARK 500 2 ARG A 31 -153.18 -133.95 REMARK 500 2 PRO A 42 40.90 -83.11 REMARK 500 2 GLN A 43 53.85 -144.78 REMARK 500 2 LEU A 59 -86.13 -122.04 REMARK 500 2 THR A 81 -80.85 -92.89 REMARK 500 2 ASP B 3 58.06 72.40 REMARK 500 2 GLU B 5 -95.82 -74.50 REMARK 500 2 GLU B 8 -165.04 58.09 REMARK 500 3 LEU A 11 -155.95 -134.49 REMARK 500 3 ASN A 14 -69.88 -120.98 REMARK 500 3 ASN A 16 -131.11 -137.79 REMARK 500 3 SER A 17 -78.15 -89.81 REMARK 500 3 LEU A 18 -99.31 -103.21 REMARK 500 3 VAL A 26 -130.11 -97.21 REMARK 500 3 SER A 29 -69.25 -156.55 REMARK 500 3 ARG A 31 -83.64 -125.52 REMARK 500 3 ARG A 51 -45.70 -136.16 REMARK 500 3 LEU A 59 -81.01 -128.98 REMARK 500 3 LEU A 66 51.84 -95.08 REMARK 500 3 THR A 81 -74.08 -99.72 REMARK 500 3 SER B 4 -70.93 -119.07 REMARK 500 3 GLU B 5 -86.88 -93.51 REMARK 500 3 GLN B 11 -122.84 -153.98 REMARK 500 4 ASN A 14 -88.21 -98.35 REMARK 500 4 ASN A 16 -158.06 -156.90 REMARK 500 4 SER A 17 -82.05 -83.53 REMARK 500 4 LEU A 18 -97.53 -102.49 REMARK 500 4 VAL A 26 -112.33 -80.95 REMARK 500 REMARK 500 THIS ENTRY HAS 299 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 27 THR A 28 1 148.68 REMARK 500 ASP A 15 ASN A 16 3 139.76 REMARK 500 ASN A 27 THR A 28 6 148.52 REMARK 500 ASN A 27 THR A 28 16 148.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 51 0.08 SIDE CHAIN REMARK 500 3 ARG A 57 0.08 SIDE CHAIN REMARK 500 6 ARG A 57 0.13 SIDE CHAIN REMARK 500 7 ARG A 57 0.12 SIDE CHAIN REMARK 500 8 ARG A 57 0.16 SIDE CHAIN REMARK 500 10 ARG A 79 0.10 SIDE CHAIN REMARK 500 11 ARG A 57 0.08 SIDE CHAIN REMARK 500 14 ARG A 31 0.10 SIDE CHAIN REMARK 500 15 ARG A 51 0.10 SIDE CHAIN REMARK 500 16 ARG A 57 0.08 SIDE CHAIN REMARK 500 17 ARG A 51 0.10 SIDE CHAIN REMARK 500 18 ARG A 51 0.09 SIDE CHAIN REMARK 500 19 ARG A 57 0.09 SIDE CHAIN REMARK 500 20 ARG A 79 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PDZ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF NON-LIGANDED PDZ2 DBREF 1D5G A 1 96 UNP Q12923 PTN13_HUMAN 1361 1456 DBREF 1D5G B 1 15 PDB 1D5G 1D5G 1 15 SEQRES 1 A 96 PRO LYS PRO GLY ASP ILE PHE GLU VAL GLU LEU ALA LYS SEQRES 2 A 96 ASN ASP ASN SER LEU GLY ILE SER VAL THR GLY GLY VAL SEQRES 3 A 96 ASN THR SER VAL ARG HIS GLY GLY ILE TYR VAL LYS ALA SEQRES 4 A 96 VAL ILE PRO GLN GLY ALA ALA GLU SER ASP GLY ARG ILE SEQRES 5 A 96 HIS LYS GLY ASP ARG VAL LEU ALA VAL ASN GLY VAL SER SEQRES 6 A 96 LEU GLU GLY ALA THR HIS LYS GLN ALA VAL GLU THR LEU SEQRES 7 A 96 ARG ASN THR GLY GLN VAL VAL HIS LEU LEU LEU GLU LYS SEQRES 8 A 96 GLY GLN SER PRO THR SEQRES 1 B 15 PHE ALA ASP SER GLU ALA ASP GLU ASN GLU GLN VAL SER SEQRES 2 B 15 ALA VAL HELIX 1 1 GLY A 44 ASP A 49 1 6 HELIX 2 2 THR A 70 ASN A 80 1 11 SHEET 1 A 4 ILE A 6 ALA A 12 0 SHEET 2 A 4 VAL A 84 GLU A 90 -1 O LEU A 89 N PHE A 7 SHEET 3 A 4 ARG A 57 VAL A 61 -1 N ARG A 57 O GLU A 90 SHEET 4 A 4 VAL A 64 SER A 65 -1 O VAL A 64 N VAL A 61 SHEET 1 B 3 TYR A 36 VAL A 40 0 SHEET 2 B 3 ILE A 20 THR A 23 -1 N SER A 21 O LYS A 38 SHEET 3 B 3 ALA B 14 VAL B 15 -1 O VAL B 15 N ILE A 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1