HEADER TRANSCRIPTION/DNA 12-OCT-99 1D5Y TITLE CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX TITLE 2 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*GP*AP*CP*AP*GP*CP*AP*CP*TP*GP*AP*AP*TP*GP*TP*CP*AP*AP*AP*G)- COMPND 4 3'); COMPND 5 CHAIN: M, O; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*CP*TP*TP*TP*GP*AP*CP*AP*TP*TP*CP*AP*GP*TP*GP*CP*TP*GP*TP*C)- COMPND 10 3'); COMPND 11 CHAIN: N, P; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ROB TRANSCRIPTION FACTOR; COMPND 15 CHAIN: A, D, C, B; COMPND 16 FRAGMENT: RESIDUES 3-289, KLAAA EXTENSION AFTER RESIDUE 289; COMPND 17 SYNONYM: RIGHT ORIGIN-BINDING PROTEIN; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEIN-DNA COMPLEX, ROB TRANSCRIPTION FACTOR, DNA, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.J.KWON,M.H.J.BENNIK,B.DEMPLE,T.ELLENBERGER REVDAT 4 07-FEB-24 1D5Y 1 REMARK REVDAT 3 24-FEB-09 1D5Y 1 VERSN REVDAT 2 01-APR-03 1D5Y 1 JRNL REVDAT 1 24-APR-00 1D5Y 0 JRNL AUTH H.J.KWON,M.H.BENNIK,B.DEMPLE,T.ELLENBERGER JRNL TITL CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI ROB TRANSCRIPTION JRNL TITL 2 FACTOR IN COMPLEX WITH DNA. JRNL REF NAT.STRUCT.BIOL. V. 7 424 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 10802742 JRNL DOI 10.1038/75213 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 54222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3812 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9276 REMARK 3 NUCLEIC ACID ATOMS : 1710 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.17100 REMARK 3 B22 (A**2) : -0.32400 REMARK 3 B33 (A**2) : 6.49400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.360 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-99. REMARK 100 THE DEPOSITION ID IS D_1000009824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9161 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OTHER REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MES, MGCL2, GLYCEROL, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 104.00600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, P, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 270 REMARK 465 LYS A 271 REMARK 465 ALA A 272 REMARK 465 GLY A 273 REMARK 465 ALA D 270 REMARK 465 LYS D 271 REMARK 465 ALA D 272 REMARK 465 GLY D 273 REMARK 465 ALA C 270 REMARK 465 LYS C 271 REMARK 465 ALA C 272 REMARK 465 GLY C 273 REMARK 465 ALA B 270 REMARK 465 LYS B 271 REMARK 465 ALA B 272 REMARK 465 GLY B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR D 33 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 35 CG CD CE NZ REMARK 470 TRP D 36 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 36 CZ3 CH2 REMARK 470 GLN D 39 CG CD OE1 NE2 REMARK 470 TYR B 33 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 TRP B 36 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 36 CZ3 CH2 REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR D 244 OD1 ASP D 260 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 172 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 -122.40 -51.55 REMARK 500 GLN A 20 -78.23 -51.71 REMARK 500 PRO A 21 131.99 -36.79 REMARK 500 ASP A 25 -39.73 -34.65 REMARK 500 LYS A 30 28.57 -63.94 REMARK 500 LYS A 35 -34.25 -39.78 REMARK 500 TYR A 80 51.78 -93.29 REMARK 500 ARG A 81 17.01 42.31 REMARK 500 GLN A 98 158.98 176.34 REMARK 500 ASP A 189 -106.92 -82.62 REMARK 500 GLN A 206 -84.94 -54.49 REMARK 500 ALA A 207 -34.07 -38.16 REMARK 500 ASP A 208 -147.63 49.80 REMARK 500 ALA A 267 18.09 -57.15 REMARK 500 ARG A 275 163.13 -45.90 REMARK 500 ASP D 19 -95.58 -51.23 REMARK 500 SER D 23 148.12 -171.62 REMARK 500 LYS D 30 49.36 -73.42 REMARK 500 ALA D 31 15.16 -146.08 REMARK 500 TYR D 33 -154.61 -59.83 REMARK 500 MET D 41 -75.00 -56.00 REMARK 500 VAL D 45 -83.52 -58.15 REMARK 500 ARG D 71 151.97 -49.80 REMARK 500 TYR D 80 47.10 -92.33 REMARK 500 ARG D 81 15.98 46.85 REMARK 500 PRO D 117 150.49 -49.43 REMARK 500 ASP D 135 121.56 -37.99 REMARK 500 ASP D 189 -104.00 -107.26 REMARK 500 ASP D 191 42.54 -82.49 REMARK 500 GLN D 206 -83.49 -51.21 REMARK 500 ALA D 207 -32.99 -37.95 REMARK 500 ASP D 208 -147.24 48.79 REMARK 500 THR D 246 -27.85 -143.32 REMARK 500 TYR D 265 72.18 -119.57 REMARK 500 ALA D 267 20.65 -58.14 REMARK 500 GLU D 268 44.49 -141.37 REMARK 500 ARG D 275 175.80 -58.80 REMARK 500 ASP C 9 5.75 -65.75 REMARK 500 ASP C 19 -125.43 -43.26 REMARK 500 GLN C 20 -70.23 -59.70 REMARK 500 PRO C 21 132.45 -39.55 REMARK 500 ASP C 25 -38.91 -39.40 REMARK 500 LYS C 30 31.14 -72.57 REMARK 500 TYR C 80 46.61 -92.43 REMARK 500 ARG C 81 28.84 44.25 REMARK 500 ALA C 111 46.46 -90.69 REMARK 500 PHE C 112 -85.54 -42.67 REMARK 500 ASP C 189 -110.54 -68.11 REMARK 500 ASP C 205 -169.80 -120.92 REMARK 500 ALA C 207 76.80 -110.51 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 145 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1D5Y A 3 289 UNP P0ACI0 ROB_ECOLI 3 289 DBREF 1D5Y B 3 289 UNP P0ACI0 ROB_ECOLI 3 289 DBREF 1D5Y C 3 289 UNP P0ACI0 ROB_ECOLI 3 289 DBREF 1D5Y D 3 289 UNP P0ACI0 ROB_ECOLI 3 289 DBREF 1D5Y M 1 21 PDB 1D5Y 1D5Y 1 21 DBREF 1D5Y N 1 21 PDB 1D5Y 1D5Y 1 21 DBREF 1D5Y O 1 21 PDB 1D5Y 1D5Y 1 21 DBREF 1D5Y P 1 21 PDB 1D5Y 1D5Y 1 21 SEQRES 1 M 21 DT DG DA DC DA DG DC DA DC DT DG DA DA SEQRES 2 M 21 DT DG DT DC DA DA DA DG SEQRES 1 N 21 DA DC DT DT DT DG DA DC DA DT DT DC DA SEQRES 2 N 21 DG DT DG DC DT DG DT DC SEQRES 1 O 21 DT DG DA DC DA DG DC DA DC DT DG DA DA SEQRES 2 O 21 DT DG DT DC DA DA DA DG SEQRES 1 P 21 DA DC DT DT DT DG DA DC DA DT DT DC DA SEQRES 2 P 21 DG DT DG DC DT DG DT DC SEQRES 1 A 292 GLN ALA GLY ILE ILE ARG ASP LEU LEU ILE TRP LEU GLU SEQRES 2 A 292 GLY HIS LEU ASP GLN PRO LEU SER LEU ASP ASN VAL ALA SEQRES 3 A 292 ALA LYS ALA GLY TYR SER LYS TRP HIS LEU GLN ARG MET SEQRES 4 A 292 PHE LYS ASP VAL THR GLY HIS ALA ILE GLY ALA TYR ILE SEQRES 5 A 292 ARG ALA ARG ARG LEU SER LYS SER ALA VAL ALA LEU ARG SEQRES 6 A 292 LEU THR ALA ARG PRO ILE LEU ASP ILE ALA LEU GLN TYR SEQRES 7 A 292 ARG PHE ASP SER GLN GLN THR PHE THR ARG ALA PHE LYS SEQRES 8 A 292 LYS GLN PHE ALA GLN THR PRO ALA LEU TYR ARG ARG SER SEQRES 9 A 292 PRO GLU TRP SER ALA PHE GLY ILE ARG PRO PRO LEU ARG SEQRES 10 A 292 LEU GLY GLU PHE THR MET PRO GLU HIS LYS PHE VAL THR SEQRES 11 A 292 LEU GLU ASP THR PRO LEU ILE GLY VAL THR GLN SER TYR SEQRES 12 A 292 SER CYS SER LEU GLU GLN ILE SER ASP PHE ARG HIS GLU SEQRES 13 A 292 MET ARG TYR GLN PHE TRP HIS ASP PHE LEU GLY ASN ALA SEQRES 14 A 292 PRO THR ILE PRO PRO VAL LEU TYR GLY LEU ASN GLU THR SEQRES 15 A 292 ARG PRO SER GLN ASP LYS ASP ASP GLU GLN GLU VAL PHE SEQRES 16 A 292 TYR THR THR ALA LEU ALA GLN ASP GLN ALA ASP GLY TYR SEQRES 17 A 292 VAL LEU THR GLY HIS PRO VAL MET LEU GLN GLY GLY GLU SEQRES 18 A 292 TYR VAL MET PHE THR TYR GLU GLY LEU GLY THR GLY VAL SEQRES 19 A 292 GLN GLU PHE ILE LEU THR VAL TYR GLY THR CYS MET PRO SEQRES 20 A 292 MET LEU ASN LEU THR ARG ARG LYS GLY GLN ASP ILE GLU SEQRES 21 A 292 ARG TYR TYR PRO ALA GLU ASP ALA LYS ALA GLY ASP ARG SEQRES 22 A 292 PRO ILE ASN LEU ARG CYS GLU LEU LEU ILE PRO ILE ARG SEQRES 23 A 292 ARG LYS LEU ALA ALA ALA SEQRES 1 D 292 GLN ALA GLY ILE ILE ARG ASP LEU LEU ILE TRP LEU GLU SEQRES 2 D 292 GLY HIS LEU ASP GLN PRO LEU SER LEU ASP ASN VAL ALA SEQRES 3 D 292 ALA LYS ALA GLY TYR SER LYS TRP HIS LEU GLN ARG MET SEQRES 4 D 292 PHE LYS ASP VAL THR GLY HIS ALA ILE GLY ALA TYR ILE SEQRES 5 D 292 ARG ALA ARG ARG LEU SER LYS SER ALA VAL ALA LEU ARG SEQRES 6 D 292 LEU THR ALA ARG PRO ILE LEU ASP ILE ALA LEU GLN TYR SEQRES 7 D 292 ARG PHE ASP SER GLN GLN THR PHE THR ARG ALA PHE LYS SEQRES 8 D 292 LYS GLN PHE ALA GLN THR PRO ALA LEU TYR ARG ARG SER SEQRES 9 D 292 PRO GLU TRP SER ALA PHE GLY ILE ARG PRO PRO LEU ARG SEQRES 10 D 292 LEU GLY GLU PHE THR MET PRO GLU HIS LYS PHE VAL THR SEQRES 11 D 292 LEU GLU ASP THR PRO LEU ILE GLY VAL THR GLN SER TYR SEQRES 12 D 292 SER CYS SER LEU GLU GLN ILE SER ASP PHE ARG HIS GLU SEQRES 13 D 292 MET ARG TYR GLN PHE TRP HIS ASP PHE LEU GLY ASN ALA SEQRES 14 D 292 PRO THR ILE PRO PRO VAL LEU TYR GLY LEU ASN GLU THR SEQRES 15 D 292 ARG PRO SER GLN ASP LYS ASP ASP GLU GLN GLU VAL PHE SEQRES 16 D 292 TYR THR THR ALA LEU ALA GLN ASP GLN ALA ASP GLY TYR SEQRES 17 D 292 VAL LEU THR GLY HIS PRO VAL MET LEU GLN GLY GLY GLU SEQRES 18 D 292 TYR VAL MET PHE THR TYR GLU GLY LEU GLY THR GLY VAL SEQRES 19 D 292 GLN GLU PHE ILE LEU THR VAL TYR GLY THR CYS MET PRO SEQRES 20 D 292 MET LEU ASN LEU THR ARG ARG LYS GLY GLN ASP ILE GLU SEQRES 21 D 292 ARG TYR TYR PRO ALA GLU ASP ALA LYS ALA GLY ASP ARG SEQRES 22 D 292 PRO ILE ASN LEU ARG CYS GLU LEU LEU ILE PRO ILE ARG SEQRES 23 D 292 ARG LYS LEU ALA ALA ALA SEQRES 1 C 292 GLN ALA GLY ILE ILE ARG ASP LEU LEU ILE TRP LEU GLU SEQRES 2 C 292 GLY HIS LEU ASP GLN PRO LEU SER LEU ASP ASN VAL ALA SEQRES 3 C 292 ALA LYS ALA GLY TYR SER LYS TRP HIS LEU GLN ARG MET SEQRES 4 C 292 PHE LYS ASP VAL THR GLY HIS ALA ILE GLY ALA TYR ILE SEQRES 5 C 292 ARG ALA ARG ARG LEU SER LYS SER ALA VAL ALA LEU ARG SEQRES 6 C 292 LEU THR ALA ARG PRO ILE LEU ASP ILE ALA LEU GLN TYR SEQRES 7 C 292 ARG PHE ASP SER GLN GLN THR PHE THR ARG ALA PHE LYS SEQRES 8 C 292 LYS GLN PHE ALA GLN THR PRO ALA LEU TYR ARG ARG SER SEQRES 9 C 292 PRO GLU TRP SER ALA PHE GLY ILE ARG PRO PRO LEU ARG SEQRES 10 C 292 LEU GLY GLU PHE THR MET PRO GLU HIS LYS PHE VAL THR SEQRES 11 C 292 LEU GLU ASP THR PRO LEU ILE GLY VAL THR GLN SER TYR SEQRES 12 C 292 SER CYS SER LEU GLU GLN ILE SER ASP PHE ARG HIS GLU SEQRES 13 C 292 MET ARG TYR GLN PHE TRP HIS ASP PHE LEU GLY ASN ALA SEQRES 14 C 292 PRO THR ILE PRO PRO VAL LEU TYR GLY LEU ASN GLU THR SEQRES 15 C 292 ARG PRO SER GLN ASP LYS ASP ASP GLU GLN GLU VAL PHE SEQRES 16 C 292 TYR THR THR ALA LEU ALA GLN ASP GLN ALA ASP GLY TYR SEQRES 17 C 292 VAL LEU THR GLY HIS PRO VAL MET LEU GLN GLY GLY GLU SEQRES 18 C 292 TYR VAL MET PHE THR TYR GLU GLY LEU GLY THR GLY VAL SEQRES 19 C 292 GLN GLU PHE ILE LEU THR VAL TYR GLY THR CYS MET PRO SEQRES 20 C 292 MET LEU ASN LEU THR ARG ARG LYS GLY GLN ASP ILE GLU SEQRES 21 C 292 ARG TYR TYR PRO ALA GLU ASP ALA LYS ALA GLY ASP ARG SEQRES 22 C 292 PRO ILE ASN LEU ARG CYS GLU LEU LEU ILE PRO ILE ARG SEQRES 23 C 292 ARG LYS LEU ALA ALA ALA SEQRES 1 B 292 GLN ALA GLY ILE ILE ARG ASP LEU LEU ILE TRP LEU GLU SEQRES 2 B 292 GLY HIS LEU ASP GLN PRO LEU SER LEU ASP ASN VAL ALA SEQRES 3 B 292 ALA LYS ALA GLY TYR SER LYS TRP HIS LEU GLN ARG MET SEQRES 4 B 292 PHE LYS ASP VAL THR GLY HIS ALA ILE GLY ALA TYR ILE SEQRES 5 B 292 ARG ALA ARG ARG LEU SER LYS SER ALA VAL ALA LEU ARG SEQRES 6 B 292 LEU THR ALA ARG PRO ILE LEU ASP ILE ALA LEU GLN TYR SEQRES 7 B 292 ARG PHE ASP SER GLN GLN THR PHE THR ARG ALA PHE LYS SEQRES 8 B 292 LYS GLN PHE ALA GLN THR PRO ALA LEU TYR ARG ARG SER SEQRES 9 B 292 PRO GLU TRP SER ALA PHE GLY ILE ARG PRO PRO LEU ARG SEQRES 10 B 292 LEU GLY GLU PHE THR MET PRO GLU HIS LYS PHE VAL THR SEQRES 11 B 292 LEU GLU ASP THR PRO LEU ILE GLY VAL THR GLN SER TYR SEQRES 12 B 292 SER CYS SER LEU GLU GLN ILE SER ASP PHE ARG HIS GLU SEQRES 13 B 292 MET ARG TYR GLN PHE TRP HIS ASP PHE LEU GLY ASN ALA SEQRES 14 B 292 PRO THR ILE PRO PRO VAL LEU TYR GLY LEU ASN GLU THR SEQRES 15 B 292 ARG PRO SER GLN ASP LYS ASP ASP GLU GLN GLU VAL PHE SEQRES 16 B 292 TYR THR THR ALA LEU ALA GLN ASP GLN ALA ASP GLY TYR SEQRES 17 B 292 VAL LEU THR GLY HIS PRO VAL MET LEU GLN GLY GLY GLU SEQRES 18 B 292 TYR VAL MET PHE THR TYR GLU GLY LEU GLY THR GLY VAL SEQRES 19 B 292 GLN GLU PHE ILE LEU THR VAL TYR GLY THR CYS MET PRO SEQRES 20 B 292 MET LEU ASN LEU THR ARG ARG LYS GLY GLN ASP ILE GLU SEQRES 21 B 292 ARG TYR TYR PRO ALA GLU ASP ALA LYS ALA GLY ASP ARG SEQRES 22 B 292 PRO ILE ASN LEU ARG CYS GLU LEU LEU ILE PRO ILE ARG SEQRES 23 B 292 ARG LYS LEU ALA ALA ALA HELIX 1 1 GLN A 3 GLY A 16 1 14 HELIX 2 2 LEU A 24 ALA A 29 1 6 HELIX 3 3 SER A 34 GLY A 47 1 14 HELIX 4 4 ALA A 49 THR A 69 1 21 HELIX 5 5 PRO A 72 TYR A 80 1 9 HELIX 6 6 SER A 84 ALA A 97 1 14 HELIX 7 7 THR A 99 SER A 106 1 8 HELIX 8 8 SER A 148 GLU A 150 5 3 HELIX 9 9 GLN A 151 ALA A 171 1 21 HELIX 10 10 GLN A 204 ASP A 208 1 5 HELIX 11 11 GLY A 209 VAL A 211 5 3 HELIX 12 12 GLY A 235 THR A 246 1 12 HELIX 13 13 THR A 246 LEU A 251 1 6 HELIX 14 14 PRO A 266 ASP A 269 5 4 HELIX 15 15 GLN D 3 GLU D 15 1 13 HELIX 16 16 SER D 34 GLY D 47 1 14 HELIX 17 17 ALA D 49 THR D 69 1 21 HELIX 18 18 PRO D 72 TYR D 80 1 9 HELIX 19 19 SER D 84 ALA D 97 1 14 HELIX 20 20 THR D 99 SER D 106 1 8 HELIX 21 21 SER D 148 GLU D 150 5 3 HELIX 22 22 GLN D 151 GLY D 169 1 19 HELIX 23 23 GLN D 204 ASP D 208 1 5 HELIX 24 24 GLY D 209 VAL D 211 5 3 HELIX 25 25 GLY D 235 THR D 246 1 12 HELIX 26 26 THR D 246 LEU D 251 1 6 HELIX 27 27 PRO D 266 ASP D 269 5 4 HELIX 28 28 GLN C 3 LEU C 18 1 16 HELIX 29 29 ASN C 26 LYS C 30 5 5 HELIX 30 30 SER C 34 GLY C 47 1 14 HELIX 31 31 ALA C 49 THR C 69 1 21 HELIX 32 32 PRO C 72 TYR C 80 1 9 HELIX 33 33 SER C 84 ALA C 97 1 14 HELIX 34 34 THR C 99 SER C 106 1 8 HELIX 35 35 GLN C 151 LEU C 168 1 18 HELIX 36 36 GLY C 235 THR C 246 1 12 HELIX 37 37 THR C 246 ASN C 252 1 7 HELIX 38 38 GLN B 3 GLY B 16 1 14 HELIX 39 39 SER B 34 VAL B 45 1 12 HELIX 40 40 ALA B 49 THR B 69 1 21 HELIX 41 41 PRO B 72 TYR B 80 1 9 HELIX 42 42 SER B 84 ALA B 97 1 14 HELIX 43 43 THR B 99 SER B 106 1 8 HELIX 44 44 SER B 148 GLU B 150 5 3 HELIX 45 45 GLN B 151 GLY B 169 1 19 HELIX 46 46 GLY B 235 THR B 246 1 12 HELIX 47 47 THR B 246 LEU B 251 1 6 HELIX 48 48 PRO B 266 ASP B 269 5 4 SHEET 1 A 5 HIS A 128 LEU A 133 0 SHEET 2 A 5 GLY A 222 LEU A 232 -1 O GLY A 222 N LEU A 133 SHEET 3 A 5 ASN A 278 ARG A 288 -1 N LEU A 279 O GLY A 231 SHEET 4 A 5 THR A 254 ARG A 255 -1 O THR A 254 N ARG A 288 SHEET 5 A 5 TRP A 109 SER A 110 -1 O TRP A 109 N ARG A 255 SHEET 1 B 8 HIS A 128 LEU A 133 0 SHEET 2 B 8 GLY A 222 LEU A 232 -1 O GLY A 222 N LEU A 133 SHEET 3 B 8 ASN A 278 ARG A 288 -1 N LEU A 279 O GLY A 231 SHEET 4 B 8 ASP A 260 TYR A 264 -1 N ILE A 261 O LEU A 284 SHEET 5 B 8 LEU A 178 PRO A 186 -1 O LEU A 178 N TYR A 264 SHEET 6 B 8 GLN A 194 ALA A 203 -1 N GLU A 195 O ARG A 185 SHEET 7 B 8 THR A 136 SER A 144 -1 N ILE A 139 O LEU A 202 SHEET 8 B 8 HIS A 215 LEU A 219 -1 O HIS A 215 N GLY A 140 SHEET 1 C 8 GLU D 127 LEU D 133 0 SHEET 2 C 8 GLY D 222 LEU D 232 -1 O GLY D 222 N LEU D 133 SHEET 3 C 8 ASN D 278 PRO D 286 -1 N LEU D 279 O GLY D 231 SHEET 4 C 8 ASP D 260 TYR D 264 -1 O ILE D 261 N LEU D 284 SHEET 5 C 8 LEU D 178 PRO D 186 -1 N LEU D 178 O TYR D 264 SHEET 6 C 8 GLN D 194 ALA D 203 -1 N GLU D 195 O ARG D 185 SHEET 7 C 8 THR D 136 SER D 144 -1 O ILE D 139 N LEU D 202 SHEET 8 C 8 HIS D 215 LEU D 219 -1 O HIS D 215 N GLY D 140 SHEET 1 D 2 TRP C 109 SER C 110 0 SHEET 2 D 2 THR C 254 ARG C 255 -1 N ARG C 255 O TRP C 109 SHEET 1 E 8 PHE C 130 LEU C 133 0 SHEET 2 E 8 GLY C 222 LEU C 232 -1 N GLY C 222 O LEU C 133 SHEET 3 E 8 ASN C 278 PRO C 286 -1 O LEU C 279 N GLY C 231 SHEET 4 E 8 ASP C 260 TYR C 264 -1 N ILE C 261 O LEU C 284 SHEET 5 E 8 LEU C 178 PRO C 186 -1 O LEU C 178 N TYR C 264 SHEET 6 E 8 GLN C 194 ALA C 203 -1 N GLU C 195 O ARG C 185 SHEET 7 E 8 THR C 136 SER C 144 -1 N ILE C 139 O LEU C 202 SHEET 8 E 8 HIS C 215 LEU C 219 -1 O HIS C 215 N GLY C 140 SHEET 1 F 2 TRP B 109 SER B 110 0 SHEET 2 F 2 THR B 254 ARG B 255 -1 N ARG B 255 O TRP B 109 SHEET 1 G 8 GLU B 127 LEU B 133 0 SHEET 2 G 8 GLY B 222 LEU B 232 -1 O GLY B 222 N LEU B 133 SHEET 3 G 8 ASN B 278 PRO B 286 -1 N LEU B 279 O GLY B 231 SHEET 4 G 8 ASP B 260 TYR B 264 -1 O ILE B 261 N LEU B 284 SHEET 5 G 8 LEU B 178 PRO B 186 -1 O LEU B 178 N TYR B 264 SHEET 6 G 8 GLN B 194 ALA B 203 -1 N GLU B 195 O ARG B 185 SHEET 7 G 8 THR B 136 TYR B 145 -1 O ILE B 139 N LEU B 202 SHEET 8 G 8 HIS B 215 LEU B 219 -1 O HIS B 215 N GLY B 140 CRYST1 75.384 208.012 67.731 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014764 0.00000