HEADER HYDROLASE/ANTIBIOTIC 25-OCT-99 1D8T TITLE CRYSTAL STRUCTURE OF ELONGATION FACTOR, TU (EF-TU-MGGDP) COMPLEXED TITLE 2 WITH GE2270A, A THIAZOLYL PEPTIDE ANTIBIOTIC CAVEAT 1D8T BB8 D 8 HAS WRONG CHIRALITY AT ATOM CB, BB8 C 8 HAS WRONG CAVEAT 2 1D8T CHIRALITY AT ATOM CB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU; COMPND 3 CHAIN: A, B; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: THIOCILLIN GE2270; COMPND 6 CHAIN: C, D; COMPND 7 SYNONYM: GE2270A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PLANOBISPORA ROSEA; SOURCE 6 ORGANISM_TAXID: 35762 KEYWDS HYDROLASE-ANTIBIOTIC COMPLEX, THIOPEPTIDE, ANTIBIOTIC, ANTIBACTERIAL, KEYWDS 2 THIAZOLE, OXAZOLE, HYDROLASE, GTPASE, TRANSLATION ELONGATION FACTOR, KEYWDS 3 PROTEIN SYNTHESIS, NUCLEOTIDE-BINDING, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.E.HEFFRON,F.JURNAK REVDAT 8 01-NOV-17 1D8T 1 REMARK REVDAT 7 04-OCT-17 1D8T 1 REMARK REVDAT 6 18-APR-12 1D8T 1 COMPND REVDAT 5 27-JUL-11 1D8T 1 REMARK REVDAT REVDAT 4 13-JUL-11 1D8T 1 VERSN REVDAT 3 24-FEB-09 1D8T 1 VERSN REVDAT 2 01-APR-03 1D8T 1 JRNL REVDAT 1 25-OCT-00 1D8T 0 JRNL AUTH S.E.HEFFRON,F.JURNAK JRNL TITL STRUCTURE OF AN EF-TU COMPLEX WITH A THIAZOLYL PEPTIDE JRNL TITL 2 ANTIBIOTIC DETERMINED AT 2.35 A RESOLUTION: ATOMIC BASIS FOR JRNL TITL 3 GE2270A INHIBITION OF EF-TU. JRNL REF BIOCHEMISTRY V. 39 37 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10625477 JRNL DOI 10.1021/BI9913597 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1817617.550 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 31214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2178 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3923 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 314 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 178 REMARK 3 SOLVENT ATOMS : 379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.79000 REMARK 3 B22 (A**2) : 8.08000 REMARK 3 B33 (A**2) : -3.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.910 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.420 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.320 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.390 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 56.13 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : GDP96_CNS.PARAM REMARK 3 PARAMETER FILE 5 : PARAM_ED6.GE REMARK 3 PARAMETER FILE 6 : ACETATE.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GDP96_CNS.TOP REMARK 3 TOPOLOGY FILE 5 : TOPH_ED5.GE REMARK 3 TOPOLOGY FILE 6 : ACETATE.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SOME NCS RESTRAINTS WERE APPLIED DURING REMARK 3 REFINEMENT. REMARK 4 REMARK 4 1D8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA, TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31214 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 24.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.10800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, MAGNESIUM CHLORIDE, GDP, REMARK 280 POLYETHYLENE GLYCOL 3350, AMMONIUM ACETATE, AMMONIUM CITRATE, PH REMARK 280 7.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2007 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 GEA2270A IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. REMARK 400 ALL MEMBERS SHARE A MACROCYLIC CORE, CONSISTING OF A NITROGEN REMARK 400 CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A REMARK 400 SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, REMARK 400 THIAZOLINES AND OXAZOLES. POST TRANSLATIONAL MATURATION OF THIAZOLE REMARK 400 AND OXAZOLE CONTAINING ANTIBIOTICS INVOLVES THE ENZYMIC REMARK 400 CONDENSATION OF A CYS OR SER WITH THE ALPHA- CARBONYL OF THE REMARK 400 PRECEDING AMINO ACID TO FORM A THIOETHER OR ETHER BOND, THEN REMARK 400 DEHYDRATION TO FORM A DOUBLE BOND WITH THE ALPHA-AMINO NITROGEN. REMARK 400 THIAZOLINE OR OXAZOLINE RING ARE DEHYDROGENATED TO FORM THIAZOLE OR REMARK 400 OXAZOLE RINGS. IN ADDITION CROSS-LINKING OF A SER AND A CYS-SER REMARK 400 PAIR USUALLY SEPARATED BY 7 OR 8 RESIDUES ALONG THE PEPTIDE CHAIN REMARK 400 PRODUCE A PYRIDINYL RING. THE SER RESIDUES ARE DEHYDRATED TO REMARK 400 DIDEHYDROALANINES, THEN BONDED BETWEEN THEIR BETA CARBONS. THE REMARK 400 ALPHA CARBONYL OF THE CYS CONDENSES WITH ALPHA CARBON OF THE FIRST REMARK 400 SER TO FORM A PYRIDINYL RING. THE RING MAY BE MUTIPLY REMARK 400 DEHYDROGENATED TO FORM A PYRIDINE RING WITH LOSS OF THE AMINO REMARK 400 NITROGEN OF THE FIRST SER. SEVERAL ISOMERS ARE PRODUCED. THE REMARK 400 STRUCTURAL DIFFERENCES BETWEEN THEM LIE IN THE EXTENT OF THE REMARK 400 MODIFICATIONS, METHYLATION, METHOXYLATION, AND OXIDATION OF THE REMARK 400 THIAZOLE AND OXAZOLE RINGS, AND METHYLATION OF ASPARAGINE. THE REMARK 400 AMIDATION OF PRO-14 PROBABLY DOES NOT OCCUR BY THE SAME MECHANISM, REMARK 400 OXIDATIVE CLEAVAGE OF GLYCINE, AS IN EUKARYOTES. REMARK 400 REMARK 400 THE GE2270A IS THIOPEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: GE2270A REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: GEA2270A IS A THIOPEPTIDE CONSISTING OF ONE PYRIDINE, REMARK 400 ONE OXAZOLE AND FIVE THIAZOLE RINGS. THE OBSERVED C- REMARK 400 TERMINAL AMINO GROUP NH2(15) IS LIKELY TO BE A POST- REMARK 400 TRANSLATIONAL DECARBOXYLATED REMNANT OF A SER C- REMARK 400 TERMINAL RESIDUE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 SER B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 PHE B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 465 THR B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER C 1 CA SER C 1 CB -0.096 REMARK 500 BB9 C 12 C SER C 13 N 0.178 REMARK 500 SER D 1 CA SER D 1 CB -0.095 REMARK 500 BB9 D 12 C SER D 13 N 0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER C 13 C - N - CA ANGL. DEV. = -16.0 DEGREES REMARK 500 SER D 13 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 86.72 -45.71 REMARK 500 ILE A 247 -78.42 62.53 REMARK 500 ARG A 262 -2.22 75.47 REMARK 500 ARG A 333 -59.34 65.47 REMARK 500 ALA B 57 88.59 -168.36 REMARK 500 ARG B 58 -4.50 65.74 REMARK 500 ILE B 247 -79.12 60.62 REMARK 500 PHE B 261 61.97 22.15 REMARK 500 ARG B 333 -62.03 64.75 REMARK 500 LEU B 392 -77.91 -109.65 REMARK 500 VAL C 5 -44.40 -145.65 REMARK 500 SER C 13 78.17 121.80 REMARK 500 VAL D 5 -42.68 -133.62 REMARK 500 SER D 13 83.23 115.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 GDP A 999 O2B 91.8 REMARK 620 3 HOH A2063 O 80.8 92.6 REMARK 620 4 HOH A2064 O 164.4 96.6 85.6 REMARK 620 5 HOH A2218 O 93.6 88.4 174.4 99.8 REMARK 620 6 HOH A2018 O 83.7 174.7 83.9 87.2 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2013 O REMARK 620 2 HOH B2140 O 91.2 REMARK 620 3 THR B 25 OG1 81.6 95.1 REMARK 620 4 GDP B 999 O2B 172.8 86.7 91.7 REMARK 620 5 HOH B2006 O 91.8 170.2 76.2 89.2 REMARK 620 6 HOH B2141 O 100.3 103.0 161.7 86.8 85.6 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AG" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BG" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3016 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3017 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3019 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3020 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3021 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3022 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3023 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3025 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3026 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3028 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 3030 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3008 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3009 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3011 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3012 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3014 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3015 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3018 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3024 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3027 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 3029 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 C 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 D 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF THIOCILIN GE2270 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF THIOCILIN GE2270 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E9W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THIOPEPTIDE THIOSTREPTON REMARK 900 RELATED ID: 1OLN RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THIOPEPTIDE THIOSTREPTON BINDING TO L11 REMARK 900 SUBSTRATE FROM 50S RIBOSOMAL RNA REMARK 900 RELATED ID: 2C77 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-GNP COMPLEXED WITH REMARK 900 THIOPEPTIDE GE2270A. REMARK 900 RELATED ID: 2JQ7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEX OF THIOPEPTIDE THIOSTREPTON AND REMARK 900 RIBOSOMAL L11-RNA REMARK 900 RELATED ID: 2ZJP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NOSIHEPTIDE COMPLEXED WITH THE LARGE RIBOSOMAL REMARK 900 SUBUNIT OF DEINOCOCCUS RADIODURANS REMARK 900 RELATED ID: 3CF5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBOSOMAL L11-RNA COMPLEXED WITH THE REMARK 900 THIOPEPTIDE THIOSTREPTON DBREF 1D8T A 1 393 UNP P0A6N1 EFTU_ECOLI 1 393 DBREF 1D8T B 1 393 UNP P0A6N1 EFTU_ECOLI 1 393 DBREF 1D8T C 1 14 UNP Q7M0J8 THCL_PLARO 1 14 DBREF 1D8T D 1 14 UNP Q7M0J8 THCL_PLARO 1 14 SEQADV 1D8T GLY A 393 UNP P0A6N1 SER 393 CONFLICT SEQADV 1D8T GLY B 393 UNP P0A6N1 SER 393 CONFLICT SEQRES 1 A 393 SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN SEQRES 2 A 393 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 393 LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR SEQRES 4 A 393 GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN ALA SEQRES 5 A 393 PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SER SEQRES 6 A 393 HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS SEQRES 7 A 393 VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET SEQRES 8 A 393 ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL SEQRES 9 A 393 VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU SEQRES 10 A 393 HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE SEQRES 11 A 393 ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU SEQRES 12 A 393 GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU SEQRES 13 A 393 LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE SEQRES 14 A 393 VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA SEQRES 15 A 393 GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU SEQRES 16 A 393 ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS SEQRES 17 A 393 PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER SEQRES 18 A 393 GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY SEQRES 19 A 393 ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE SEQRES 20 A 393 LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET SEQRES 21 A 393 PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN SEQRES 22 A 393 VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE SEQRES 23 A 393 GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS SEQRES 24 A 393 PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER SEQRES 25 A 393 LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY SEQRES 26 A 393 TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR SEQRES 27 A 393 GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET SEQRES 28 A 393 PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS SEQRES 29 A 393 PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG SEQRES 30 A 393 GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS SEQRES 31 A 393 VAL LEU GLY SEQRES 1 B 393 SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN SEQRES 2 B 393 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 B 393 LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR SEQRES 4 B 393 GLY GLY ALA ALA ARG ALA PHE ASP GLN ILE ASP ASN ALA SEQRES 5 B 393 PRO GLU GLU LYS ALA ARG GLY ILE THR ILE ASN THR SER SEQRES 6 B 393 HIS VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS SEQRES 7 B 393 VAL ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET SEQRES 8 B 393 ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL SEQRES 9 B 393 VAL ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU SEQRES 10 B 393 HIS ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE SEQRES 11 B 393 ILE VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU SEQRES 12 B 393 GLU LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU SEQRES 13 B 393 LEU SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE SEQRES 14 B 393 VAL ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA SEQRES 15 B 393 GLU TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU SEQRES 16 B 393 ASP SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS SEQRES 17 B 393 PRO PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER SEQRES 18 B 393 GLY ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY SEQRES 19 B 393 ILE ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE SEQRES 20 B 393 LYS GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET SEQRES 21 B 393 PHE ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN SEQRES 22 B 393 VAL GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE SEQRES 23 B 393 GLU ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS SEQRES 24 B 393 PRO HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER SEQRES 25 B 393 LYS ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY SEQRES 26 B 393 TYR ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR SEQRES 27 B 393 GLY THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET SEQRES 28 B 393 PRO GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS SEQRES 29 B 393 PRO ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG SEQRES 30 B 393 GLU GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS SEQRES 31 B 393 VAL LEU GLY SEQRES 1 C 15 SER BB9 MEN BB6 VAL BB7 GLY BB8 BB9 BB9 MH6 BB9 SER SEQRES 2 C 15 PRO NH2 SEQRES 1 D 15 SER BB9 MEN BB6 VAL BB7 GLY BB8 BB9 BB9 MH6 BB9 SER SEQRES 2 D 15 PRO NH2 MODRES 1D8T BB9 C 2 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T MEN C 3 ASN POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB6 C 4 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB7 C 6 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB8 C 8 PHE POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 C 9 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 C 10 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T MH6 C 11 SER POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 C 12 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 D 2 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T MEN D 3 ASN POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB6 D 4 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB7 D 6 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB8 D 8 PHE POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 D 9 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 D 10 CYS POST-TRANSLATIONAL MODIFICATION MODRES 1D8T MH6 D 11 SER POST-TRANSLATIONAL MODIFICATION MODRES 1D8T BB9 D 12 CYS POST-TRANSLATIONAL MODIFICATION HET BB9 C 2 6 HET MEN C 3 8 HET BB6 C 4 7 HET BB7 C 6 9 HET BB8 C 8 11 HET BB9 C 9 5 HET BB9 C 10 5 HET MH6 C 11 4 HET BB9 C 12 5 HET NH2 C 15 1 HET BB9 D 2 6 HET MEN D 3 8 HET BB6 D 4 7 HET BB7 D 6 9 HET BB8 D 8 11 HET BB9 D 9 5 HET BB9 D 10 5 HET MH6 D 11 4 HET BB9 D 12 5 HET NH2 D 15 1 HET MG A 998 1 HET GDP A 999 28 HET ACT A3002 4 HET ACT A3003 4 HET ACT A3004 4 HET ACT A3005 4 HET ACT A3006 4 HET ACT A3007 4 HET ACT A3010 4 HET ACT A3013 4 HET ACT A3016 4 HET ACT A3017 4 HET ACT A3019 4 HET ACT A3020 4 HET ACT A3021 4 HET ACT A3022 4 HET ACT A3023 4 HET ACT A3025 4 HET ACT A3026 4 HET ACT A3028 4 HET ACT A3030 4 HET MG B 998 1 HET GDP B 999 28 HET ACT B3001 4 HET ACT B3008 4 HET ACT B3009 4 HET ACT B3011 4 HET ACT B3012 4 HET ACT B3014 4 HET ACT B3015 4 HET ACT B3018 4 HET ACT B3024 4 HET ACT B3027 4 HET ACT B3029 4 HETNAM BB9 (2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID HETNAM MEN N-METHYL ASPARAGINE HETNAM BB6 (2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID HETNAM BB7 (2Z)-2-AMINO-4-METHOXY-3-SULFANYLBUT-2-ENOIC ACID HETNAM BB8 (2S,3S)-BETA-HYDROXY-PHENYLALANINE HETNAM MH6 3-HYDROXY-2-IMINOPROPANOIC ACID HETNAM NH2 AMINO GROUP HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ACT ACETATE ION HETSYN BB8 BETA-HYDROXY-PHENYLALANINE, THREO-BETA-HYDROXY-L- HETSYN 2 BB8 PHENYLALANINE, (BETAS)-BETA-HYDROXY-L-PHENYLALANINE, HETSYN 3 BB8 L-THREO-3-PHENYLSERINE, L-THREO-BETA-PHENYLSERINE, 3- HETSYN 4 BB8 HYDROXY-L-PHENYLALANINE FORMUL 3 BB9 8(C3 H5 N O2 S) FORMUL 3 MEN 2(C5 H10 N2 O3) FORMUL 3 BB6 2(C4 H7 N O2 S) FORMUL 3 BB7 2(C5 H9 N O3 S) FORMUL 3 BB8 2(C9 H11 N O3) FORMUL 3 MH6 2(C3 H5 N O3) FORMUL 3 NH2 2(H2 N) FORMUL 5 MG 2(MG 2+) FORMUL 6 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 ACT 30(C2 H3 O2 1-) FORMUL 39 HOH *379(H2 O) HELIX 1 1 GLY A 23 GLY A 40 1 18 HELIX 2 2 ALA A 45 ASN A 51 1 7 HELIX 3 3 GLY A 83 GLY A 94 1 12 HELIX 4 4 MET A 112 GLY A 126 1 15 HELIX 5 5 LYS A 136 VAL A 140 5 5 HELIX 6 6 ASP A 142 TYR A 160 1 19 HELIX 7 7 PRO A 163 THR A 167 5 5 HELIX 8 8 SER A 173 GLU A 179 1 7 HELIX 9 9 ASP A 181 ILE A 199 1 19 HELIX 10 10 ARG A 204 LYS A 208 5 5 HELIX 11 11 LYS A 282 ILE A 286 5 5 HELIX 12 12 GLY B 23 GLY B 40 1 18 HELIX 13 13 ALA B 45 ASN B 51 1 7 HELIX 14 14 GLY B 83 GLY B 94 1 12 HELIX 15 15 MET B 112 GLY B 126 1 15 HELIX 16 16 LYS B 136 VAL B 140 5 5 HELIX 17 17 ASP B 142 GLN B 159 1 18 HELIX 18 18 PRO B 163 THR B 167 5 5 HELIX 19 19 SER B 173 GLU B 179 1 7 HELIX 20 20 ASP B 181 ILE B 199 1 19 HELIX 21 21 ARG B 204 LYS B 208 5 5 HELIX 22 22 LYS B 282 ILE B 286 5 5 SHEET 1 AA 6 SER A 65 ASP A 70 0 SHEET 2 AA 6 HIS A 75 ASP A 80 -1 O TYR A 76 N TYR A 69 SHEET 3 AA 6 HIS A 11 ILE A 17 1 O VAL A 12 N ALA A 77 SHEET 4 AA 6 ALA A 101 ALA A 106 1 O ILE A 102 N ILE A 17 SHEET 5 AA 6 ILE A 130 ASN A 135 1 O ILE A 131 N LEU A 103 SHEET 6 AA 6 ILE A 169 ARG A 171 1 O VAL A 170 N LEU A 134 SHEET 1 AB 2 GLU A 54 ALA A 57 0 SHEET 2 AB 2 ILE A 60 ASN A 63 -1 O ILE A 60 N ALA A 57 SHEET 1 AC 5 LEU A 211 PRO A 213 0 SHEET 2 AC 5 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 3 AC 5 GLU A 241 VAL A 245 -1 O GLU A 243 N ALA A 293 SHEET 4 AC 5 GLN A 251 MET A 260 -1 O GLN A 251 N ILE A 244 SHEET 5 AC 5 LYS A 263 LEU A 265 -1 O LYS A 263 N MET A 260 SHEET 1 AD 7 LEU A 211 PRO A 213 0 SHEET 2 AD 7 VAL A 291 ALA A 293 -1 O LEU A 292 N LEU A 212 SHEET 3 AD 7 GLU A 241 VAL A 245 -1 O GLU A 243 N ALA A 293 SHEET 4 AD 7 GLN A 251 MET A 260 -1 O GLN A 251 N ILE A 244 SHEET 5 AD 7 ASN A 273 LEU A 278 -1 O GLY A 275 N GLU A 259 SHEET 6 AD 7 GLY A 224 ARG A 230 -1 O THR A 225 N LEU A 278 SHEET 7 AD 7 ASP A 216 ILE A 220 -1 O ASP A 216 N THR A 228 SHEET 1 AE 2 LYS A 263 LEU A 265 0 SHEET 2 AE 2 GLN A 251 MET A 260 -1 O VAL A 258 N LEU A 265 SHEET 1 AF 2 ILE A 235 LYS A 237 0 SHEET 2 AF 2 GLU A 267 ARG A 269 -1 O GLY A 268 N ILE A 236 SHEET 1 AG 7 LYS A 299 ILE A 310 0 SHEET 2 AG 7 ASN A 355 MET A 368 -1 O ILE A 356 N VAL A 308 SHEET 3 AG 7 THR A 335 GLU A 342 -1 O THR A 338 N ILE A 363 SHEET 4 AG 7 GLN A 329 PHE A 332 -1 O PHE A 330 N VAL A 337 SHEET 5 AG 7 ARG A 373 GLU A 378 -1 O ALA A 375 N TYR A 331 SHEET 6 AG 7 ARG A 381 GLY A 393 -1 O ARG A 381 N GLU A 378 SHEET 7 AG 7 LYS A 299 ILE A 310 -1 N THR A 302 O GLY A 393 SHEET 1 AH 2 PHE A 322 PHE A 323 0 SHEET 2 AH 2 MET A 349 VAL A 350 -1 O VAL A 350 N PHE A 322 SHEET 1 BA 6 SER B 65 ASP B 70 0 SHEET 2 BA 6 HIS B 75 ASP B 80 -1 O TYR B 76 N TYR B 69 SHEET 3 BA 6 HIS B 11 ILE B 17 1 O VAL B 12 N ALA B 77 SHEET 4 BA 6 GLY B 100 ALA B 106 1 O GLY B 100 N GLY B 15 SHEET 5 BA 6 ILE B 130 ASN B 135 1 O ILE B 131 N LEU B 103 SHEET 6 BA 6 ILE B 169 ARG B 171 1 O VAL B 170 N LEU B 134 SHEET 1 BB 2 GLU B 54 GLU B 55 0 SHEET 2 BB 2 ILE B 62 ASN B 63 -1 O ILE B 62 N GLU B 55 SHEET 1 BC 5 LEU B 211 PRO B 213 0 SHEET 2 BC 5 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 BC 5 GLU B 241 VAL B 245 -1 O GLU B 243 N ALA B 293 SHEET 4 BC 5 GLN B 251 MET B 260 -1 O GLN B 251 N ILE B 244 SHEET 5 BC 5 LYS B 263 LEU B 265 -1 O LYS B 263 N MET B 260 SHEET 1 BD 7 LEU B 211 PRO B 213 0 SHEET 2 BD 7 VAL B 291 ALA B 293 -1 O LEU B 292 N LEU B 212 SHEET 3 BD 7 GLU B 241 VAL B 245 -1 O GLU B 243 N ALA B 293 SHEET 4 BD 7 GLN B 251 MET B 260 -1 O GLN B 251 N ILE B 244 SHEET 5 BD 7 ASN B 273 LEU B 278 -1 O GLY B 275 N GLU B 259 SHEET 6 BD 7 GLY B 224 ARG B 230 -1 O THR B 225 N LEU B 278 SHEET 7 BD 7 ASP B 216 ILE B 220 -1 O ASP B 216 N THR B 228 SHEET 1 BE 2 LYS B 263 LEU B 265 0 SHEET 2 BE 2 GLN B 251 MET B 260 -1 O VAL B 258 N LEU B 265 SHEET 1 BF 2 ILE B 235 LYS B 237 0 SHEET 2 BF 2 GLU B 267 ARG B 269 -1 O GLY B 268 N ILE B 236 SHEET 1 BG 7 LYS B 299 ILE B 310 0 SHEET 2 BG 7 ASN B 355 MET B 368 -1 O ILE B 356 N VAL B 308 SHEET 3 BG 7 THR B 335 GLU B 342 -1 O THR B 338 N ILE B 363 SHEET 4 BG 7 GLN B 329 PHE B 332 -1 O PHE B 330 N VAL B 337 SHEET 5 BG 7 ARG B 373 GLU B 378 -1 O ALA B 375 N TYR B 331 SHEET 6 BG 7 ARG B 381 GLY B 393 -1 O ARG B 381 N GLU B 378 SHEET 7 BG 7 LYS B 299 ILE B 310 -1 N THR B 302 O GLY B 393 SHEET 1 BH 2 PHE B 322 PHE B 323 0 SHEET 2 BH 2 MET B 349 VAL B 350 -1 O VAL B 350 N PHE B 322 LINK MG MG A 998 OG1 THR A 25 1555 1555 2.05 LINK MG MG A 998 O2B GDP A 999 1555 1555 2.14 LINK MG MG A 998 O HOH A2063 1555 1555 2.13 LINK MG MG A 998 O HOH A2064 1555 1555 2.07 LINK MG MG A 998 O HOH A2218 1555 1555 2.21 LINK MG MG A 998 O HOH A2018 1555 1555 2.19 LINK MG MG B 998 O HOH B2013 1555 1555 2.41 LINK MG MG B 998 O HOH B2140 1555 1555 2.21 LINK MG MG B 998 OG1 THR B 25 1555 1555 2.05 LINK MG MG B 998 O2B GDP B 999 1555 1555 2.27 LINK MG MG B 998 O HOH B2006 1555 1555 2.22 LINK MG MG B 998 O HOH B2141 1555 1555 2.36 LINK CB SER C 1 CB MH6 C 11 1555 1555 1.41 LINK C SER C 1 N BB9 C 2 1555 1555 1.32 LINK C SER C 1 SG BB9 C 2 1555 1555 1.72 LINK CA SER C 1 C BB9 C 10 1555 1555 1.46 LINK C BB9 C 2 N MEN C 3 1555 1555 1.36 LINK C MEN C 3 SG BB6 C 4 1555 1555 1.72 LINK C MEN C 3 N BB6 C 4 1555 1555 1.32 LINK C BB6 C 4 N VAL C 5 1555 1555 1.36 LINK C VAL C 5 SG BB7 C 6 1555 1555 1.71 LINK C VAL C 5 N BB7 C 6 1555 1555 1.33 LINK C BB7 C 6 N GLY C 7 1555 1555 1.36 LINK C GLY C 7 N BB8 C 8 1555 1555 1.35 LINK C BB8 C 8 SG BB9 C 9 1555 1555 1.72 LINK C BB8 C 8 N BB9 C 9 1555 1555 1.32 LINK C BB9 C 9 N BB9 C 10 1555 1555 1.33 LINK C BB9 C 9 SG BB9 C 10 1555 1555 1.70 LINK C BB9 C 10 N MH6 C 11 1555 1555 1.34 LINK C MH6 C 11 N BB9 C 12 1555 1555 1.33 LINK C MH6 C 11 SG BB9 C 12 1555 1555 1.72 LINK C BB9 C 12 OG SER C 13 1555 1555 1.35 LINK C BB9 C 12 N SER C 13 1555 1555 1.51 LINK C PRO C 14 N NH2 C 15 1555 1555 1.35 LINK CA SER D 1 C BB9 D 10 1555 1555 1.47 LINK C SER D 1 SG BB9 D 2 1555 1555 1.72 LINK C SER D 1 N BB9 D 2 1555 1555 1.33 LINK CB SER D 1 CB MH6 D 11 1555 1555 1.42 LINK C BB9 D 2 N MEN D 3 1555 1555 1.36 LINK C MEN D 3 SG BB6 D 4 1555 1555 1.71 LINK C MEN D 3 N BB6 D 4 1555 1555 1.31 LINK C BB6 D 4 N VAL D 5 1555 1555 1.35 LINK C VAL D 5 SG BB7 D 6 1555 1555 1.70 LINK C VAL D 5 N BB7 D 6 1555 1555 1.34 LINK C BB7 D 6 N GLY D 7 1555 1555 1.38 LINK C GLY D 7 N BB8 D 8 1555 1555 1.37 LINK C BB8 D 8 N BB9 D 9 1555 1555 1.29 LINK C BB8 D 8 SG BB9 D 9 1555 1555 1.74 LINK C BB9 D 9 SG BB9 D 10 1555 1555 1.71 LINK C BB9 D 9 N BB9 D 10 1555 1555 1.31 LINK C BB9 D 10 N MH6 D 11 1555 1555 1.34 LINK C MH6 D 11 SG BB9 D 12 1555 1555 1.71 LINK C MH6 D 11 N BB9 D 12 1555 1555 1.32 LINK C BB9 D 12 OG SER D 13 1555 1555 1.35 LINK C BB9 D 12 N SER D 13 1555 1555 1.52 LINK C PRO D 14 N NH2 D 15 1555 1555 1.35 SITE 1 AC1 6 THR A 25 GDP A 999 HOH A2018 HOH A2063 SITE 2 AC1 6 HOH A2064 HOH A2218 SITE 1 AC2 21 ASP A 21 HIS A 22 GLY A 23 LYS A 24 SITE 2 AC2 21 THR A 25 THR A 26 PHE A 46 ASN A 135 SITE 3 AC2 21 LYS A 136 ASP A 138 MET A 139 SER A 173 SITE 4 AC2 21 ALA A 174 LEU A 175 MG A 998 HOH A2017 SITE 5 AC2 21 HOH A2063 HOH A2064 HOH A2217 HOH A2218 SITE 6 AC2 21 HOH A2219 SITE 1 AC3 5 THR A 167 PRO A 168 ILE A 169 HOH A2115 SITE 2 AC3 5 ACT A3019 SITE 1 AC4 3 ARG A 123 ASP A 370 ALA A 389 SITE 1 AC5 4 ARG A 154 ASP A 165 SER A 221 ACT A3028 SITE 1 AC6 4 GLU A 152 GLU A 155 GLN A 159 HOH A2221 SITE 1 AC7 4 THR A 302 LEU A 362 ILE A 363 HOH A2172 SITE 1 AC8 2 VAL A 127 ARG A 373 SITE 1 AC9 4 PRO A 113 HOH A2221 HOH A2222 ACT B3009 SITE 1 BC1 4 ARG A 171 TRP A 184 HOH A2223 ACT A3023 SITE 1 BC2 2 ILE A 247 GLU A 287 SITE 1 BC3 2 VAL A 391 LEU A 392 SITE 1 BC4 6 ILE A 169 VAL A 170 ARG A 171 LYS A 187 SITE 2 BC4 6 GLU A 190 ACT A3002 SITE 1 BC5 3 GLU A 6 GLY A 94 ALA A 95 SITE 1 BC6 3 ASP A 50 PRO A 82 HOH A2017 SITE 1 BC7 2 SER A 65 HIS A 66 SITE 1 BC8 7 VAL A 140 ASP A 141 ASP A 142 GLU A 143 SITE 2 BC8 7 LEU A 146 ACT A3013 BB9 C 2 SITE 1 BC9 4 TYR A 129 TYR A 198 HOH A2226 HOH A2227 SITE 1 CC1 2 HIS A 84 ASN A 355 SITE 1 CC2 3 ILE A 220 SER A 221 ACT A3004 SITE 1 CC3 4 TYR A 39 LEU A 189 ALA A 192 ASP A 196 SITE 1 CC4 7 THR B 25 ASP B 50 GDP B 999 HOH B2006 SITE 2 CC4 7 HOH B2013 HOH B2140 HOH B2141 SITE 1 CC5 19 ASP B 21 HIS B 22 GLY B 23 LYS B 24 SITE 2 CC5 19 THR B 25 THR B 26 PHE B 46 ASN B 135 SITE 3 CC5 19 LYS B 136 ASP B 138 MET B 139 SER B 173 SITE 4 CC5 19 ALA B 174 LEU B 175 MG B 998 HOH B2004 SITE 5 CC5 19 HOH B2139 HOH B2140 HOH B2141 SITE 1 CC6 3 ARG B 154 ILE B 169 ACT B3008 SITE 1 CC7 5 VAL B 170 ARG B 171 LYS B 187 GLU B 190 SITE 2 CC7 5 ACT B3001 SITE 1 CC8 6 PRO A 111 ACT A3010 ARG B 318 HIS B 319 SITE 2 CC8 6 THR B 320 GLU B 378 SITE 1 CC9 5 PHE A 323 GLU A 348 VAL B 140 ASP B 141 SITE 2 CC9 5 ASP B 142 SITE 1 DC1 5 GLU B 215 ARG B 288 TYR B 331 ARG B 333 SITE 2 DC1 5 HOH B2087 SITE 1 DC2 3 HIS B 84 GLY B 353 ASN B 355 SITE 1 DC3 5 GLY B 41 ALA B 42 GLU B 68 ASP B 70 SITE 2 DC3 5 HOH B2008 SITE 1 DC4 1 ASP B 166 SITE 1 DC5 2 GLU B 201 HOH B2144 SITE 1 DC6 1 ASP B 336 SITE 1 DC7 5 TYR B 39 LEU B 189 ASP B 196 HOH B2145 SITE 2 DC7 5 HOH B2146 SITE 1 DC8 2 GLY A 222 PRO C 14 SITE 1 DC9 3 GLY B 222 SER D 13 PRO D 14 SITE 1 EC1 27 THR A 73 GLU A 143 ALA A 182 GLU A 215 SITE 2 EC1 27 ASP A 216 GLY A 222 ARG A 223 VAL A 226 SITE 3 EC1 27 THR A 228 GLY A 229 ARG A 230 THR A 256 SITE 4 EC1 27 GLY A 257 VAL A 258 GLU A 259 PHE A 261 SITE 5 EC1 27 ARG A 262 ASN A 273 VAL A 274 GLY A 275 SITE 6 EC1 27 LEU A 277 HOH A2024 HOH A2161 ACT A3023 SITE 7 EC1 27 NH2 C 15 HOH C2002 HOH C2003 SITE 1 EC2 25 PRO B 72 THR B 73 GLU B 143 GLU B 215 SITE 2 EC2 25 ASP B 216 PHE B 218 ARG B 223 VAL B 226 SITE 3 EC2 25 THR B 228 ARG B 230 THR B 256 GLY B 257 SITE 4 EC2 25 VAL B 258 GLU B 259 PHE B 261 ARG B 262 SITE 5 EC2 25 LEU B 264 ASN B 273 VAL B 274 GLY B 275 SITE 6 EC2 25 LEU B 277 HOH B2097 HOH B2099 NH2 D 15 SITE 7 EC2 25 HOH D2001 CRYST1 133.470 45.170 144.000 90.00 94.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007492 0.000000 0.000608 0.00000 SCALE2 0.000000 0.022139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006967 0.00000