data_1DB1 # _entry.id 1DB1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DB1 pdb_00001db1 10.2210/pdb1db1/pdb RCSB RCSB009937 ? ? WWPDB D_1000009937 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-01-31 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-16 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 4 'Structure model' 'Source and taxonomy' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' diffrn_source 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DB1 _pdbx_database_status.recvd_initial_deposition_date 1999-11-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rochel, N.' 1 'Wurtz, J.M.' 2 'Mitschler, A.' 3 'Klaholz, B.' 4 'Moras, D.' 5 # _citation.id primary _citation.title 'The crystal structure of the nuclear receptor for vitamin D bound to its natural ligand.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 5 _citation.page_first 173 _citation.page_last 179 _citation.year 2000 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10678179 _citation.pdbx_database_id_DOI '10.1016/S1097-2765(00)80413-X' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rochel, N.' 1 ? primary 'Wurtz, J.M.' 2 ? primary 'Mitschler, A.' 3 ? primary 'Klaholz, B.' 4 ? primary 'Moras, D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VITAMIN D NUCLEAR RECEPTOR' 29391.871 1 ? ? 'LIGAND BINDING DOMAIN' ? 2 non-polymer syn '5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' 416.636 1 ? ? ? ? 3 water nat water 18.015 164 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name VDR # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI PGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQP ECSMKLTPLVLEVFGNEIS ; _entity_poly.pdbx_seq_one_letter_code_can ;DSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRVNDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI PGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEE EHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQP ECSMKLTPLVLEVFGNEIS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' VDX 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 SER n 1 3 LEU n 1 4 ARG n 1 5 PRO n 1 6 LYS n 1 7 LEU n 1 8 SER n 1 9 GLU n 1 10 GLU n 1 11 GLN n 1 12 GLN n 1 13 ARG n 1 14 ILE n 1 15 ILE n 1 16 ALA n 1 17 ILE n 1 18 LEU n 1 19 LEU n 1 20 ASP n 1 21 ALA n 1 22 HIS n 1 23 HIS n 1 24 LYS n 1 25 THR n 1 26 TYR n 1 27 ASP n 1 28 PRO n 1 29 THR n 1 30 TYR n 1 31 SER n 1 32 ASP n 1 33 PHE n 1 34 CYS n 1 35 GLN n 1 36 PHE n 1 37 ARG n 1 38 PRO n 1 39 PRO n 1 40 VAL n 1 41 ARG n 1 42 VAL n 1 43 ASN n 1 44 ASP n 1 45 GLY n 1 46 GLY n 1 47 GLY n 1 48 SER n 1 49 VAL n 1 50 THR n 1 51 LEU n 1 52 GLU n 1 53 LEU n 1 54 SER n 1 55 GLN n 1 56 LEU n 1 57 SER n 1 58 MET n 1 59 LEU n 1 60 PRO n 1 61 HIS n 1 62 LEU n 1 63 ALA n 1 64 ASP n 1 65 LEU n 1 66 VAL n 1 67 SER n 1 68 TYR n 1 69 SER n 1 70 ILE n 1 71 GLN n 1 72 LYS n 1 73 VAL n 1 74 ILE n 1 75 GLY n 1 76 PHE n 1 77 ALA n 1 78 LYS n 1 79 MET n 1 80 ILE n 1 81 PRO n 1 82 GLY n 1 83 PHE n 1 84 ARG n 1 85 ASP n 1 86 LEU n 1 87 THR n 1 88 SER n 1 89 GLU n 1 90 ASP n 1 91 GLN n 1 92 ILE n 1 93 VAL n 1 94 LEU n 1 95 LEU n 1 96 LYS n 1 97 SER n 1 98 SER n 1 99 ALA n 1 100 ILE n 1 101 GLU n 1 102 VAL n 1 103 ILE n 1 104 MET n 1 105 LEU n 1 106 ARG n 1 107 SER n 1 108 ASN n 1 109 GLU n 1 110 SER n 1 111 PHE n 1 112 THR n 1 113 MET n 1 114 ASP n 1 115 ASP n 1 116 MET n 1 117 SER n 1 118 TRP n 1 119 THR n 1 120 CYS n 1 121 GLY n 1 122 ASN n 1 123 GLN n 1 124 ASP n 1 125 TYR n 1 126 LYS n 1 127 TYR n 1 128 ARG n 1 129 VAL n 1 130 SER n 1 131 ASP n 1 132 VAL n 1 133 THR n 1 134 LYS n 1 135 ALA n 1 136 GLY n 1 137 HIS n 1 138 SER n 1 139 LEU n 1 140 GLU n 1 141 LEU n 1 142 ILE n 1 143 GLU n 1 144 PRO n 1 145 LEU n 1 146 ILE n 1 147 LYS n 1 148 PHE n 1 149 GLN n 1 150 VAL n 1 151 GLY n 1 152 LEU n 1 153 LYS n 1 154 LYS n 1 155 LEU n 1 156 ASN n 1 157 LEU n 1 158 HIS n 1 159 GLU n 1 160 GLU n 1 161 GLU n 1 162 HIS n 1 163 VAL n 1 164 LEU n 1 165 LEU n 1 166 MET n 1 167 ALA n 1 168 ILE n 1 169 CYS n 1 170 ILE n 1 171 VAL n 1 172 SER n 1 173 PRO n 1 174 ASP n 1 175 ARG n 1 176 PRO n 1 177 GLY n 1 178 VAL n 1 179 GLN n 1 180 ASP n 1 181 ALA n 1 182 ALA n 1 183 LEU n 1 184 ILE n 1 185 GLU n 1 186 ALA n 1 187 ILE n 1 188 GLN n 1 189 ASP n 1 190 ARG n 1 191 LEU n 1 192 SER n 1 193 ASN n 1 194 THR n 1 195 LEU n 1 196 GLN n 1 197 THR n 1 198 TYR n 1 199 ILE n 1 200 ARG n 1 201 CYS n 1 202 ARG n 1 203 HIS n 1 204 PRO n 1 205 PRO n 1 206 PRO n 1 207 GLY n 1 208 SER n 1 209 HIS n 1 210 LEU n 1 211 LEU n 1 212 TYR n 1 213 ALA n 1 214 LYS n 1 215 MET n 1 216 ILE n 1 217 GLN n 1 218 LYS n 1 219 LEU n 1 220 ALA n 1 221 ASP n 1 222 LEU n 1 223 ARG n 1 224 SER n 1 225 LEU n 1 226 ASN n 1 227 GLU n 1 228 GLU n 1 229 HIS n 1 230 SER n 1 231 LYS n 1 232 GLN n 1 233 TYR n 1 234 ARG n 1 235 CYS n 1 236 LEU n 1 237 SER n 1 238 PHE n 1 239 GLN n 1 240 PRO n 1 241 GLU n 1 242 CYS n 1 243 SER n 1 244 MET n 1 245 LYS n 1 246 LEU n 1 247 THR n 1 248 PRO n 1 249 LEU n 1 250 VAL n 1 251 LEU n 1 252 GLU n 1 253 VAL n 1 254 PHE n 1 255 GLY n 1 256 ASN n 1 257 GLU n 1 258 ILE n 1 259 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 47 human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? PET15B ? ? 1 2 sample ? 48 259 human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? PET15B ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VDX non-polymer . '5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL' '1,25 DIHYDROXY VITAMIN D3' 'C27 H44 O3' 416.636 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 118 ? ? ? A . n A 1 2 SER 2 119 ? ? ? A . n A 1 3 LEU 3 120 120 LEU LEU A . n A 1 4 ARG 4 121 121 ARG ARG A . n A 1 5 PRO 5 122 122 PRO PRO A . n A 1 6 LYS 6 123 123 LYS LYS A . n A 1 7 LEU 7 124 124 LEU LEU A . n A 1 8 SER 8 125 125 SER SER A . n A 1 9 GLU 9 126 126 GLU GLU A . n A 1 10 GLU 10 127 127 GLU GLU A . n A 1 11 GLN 11 128 128 GLN GLN A . n A 1 12 GLN 12 129 129 GLN GLN A . n A 1 13 ARG 13 130 130 ARG ARG A . n A 1 14 ILE 14 131 131 ILE ILE A . n A 1 15 ILE 15 132 132 ILE ILE A . n A 1 16 ALA 16 133 133 ALA ALA A . n A 1 17 ILE 17 134 134 ILE ILE A . n A 1 18 LEU 18 135 135 LEU LEU A . n A 1 19 LEU 19 136 136 LEU LEU A . n A 1 20 ASP 20 137 137 ASP ASP A . n A 1 21 ALA 21 138 138 ALA ALA A . n A 1 22 HIS 22 139 139 HIS HIS A . n A 1 23 HIS 23 140 140 HIS HIS A . n A 1 24 LYS 24 141 141 LYS LYS A . n A 1 25 THR 25 142 142 THR THR A . n A 1 26 TYR 26 143 143 TYR TYR A . n A 1 27 ASP 27 144 144 ASP ASP A . n A 1 28 PRO 28 145 145 PRO PRO A . n A 1 29 THR 29 146 146 THR THR A . n A 1 30 TYR 30 147 147 TYR TYR A . n A 1 31 SER 31 148 148 SER SER A . n A 1 32 ASP 32 149 149 ASP ASP A . n A 1 33 PHE 33 150 150 PHE PHE A . n A 1 34 CYS 34 151 151 CYS CYS A . n A 1 35 GLN 35 152 152 GLN GLN A . n A 1 36 PHE 36 153 153 PHE PHE A . n A 1 37 ARG 37 154 154 ARG ARG A . n A 1 38 PRO 38 155 155 PRO PRO A . n A 1 39 PRO 39 156 156 PRO PRO A . n A 1 40 VAL 40 157 157 VAL VAL A . n A 1 41 ARG 41 158 158 ARG ARG A . n A 1 42 VAL 42 159 159 VAL VAL A . n A 1 43 ASN 43 160 160 ASN ASN A . n A 1 44 ASP 44 161 161 ASP ASP A . n A 1 45 GLY 45 162 162 GLY GLY A . n A 1 46 GLY 46 163 163 GLY GLY A . n A 1 47 GLY 47 164 164 GLY GLY A . n A 1 48 SER 48 216 216 SER SER A . n A 1 49 VAL 49 217 217 VAL VAL A . n A 1 50 THR 50 218 218 THR THR A . n A 1 51 LEU 51 219 219 LEU LEU A . n A 1 52 GLU 52 220 220 GLU GLU A . n A 1 53 LEU 53 221 221 LEU LEU A . n A 1 54 SER 54 222 222 SER SER A . n A 1 55 GLN 55 223 223 GLN GLN A . n A 1 56 LEU 56 224 224 LEU LEU A . n A 1 57 SER 57 225 225 SER SER A . n A 1 58 MET 58 226 226 MET MET A . n A 1 59 LEU 59 227 227 LEU LEU A . n A 1 60 PRO 60 228 228 PRO PRO A . n A 1 61 HIS 61 229 229 HIS HIS A . n A 1 62 LEU 62 230 230 LEU LEU A . n A 1 63 ALA 63 231 231 ALA ALA A . n A 1 64 ASP 64 232 232 ASP ASP A . n A 1 65 LEU 65 233 233 LEU LEU A . n A 1 66 VAL 66 234 234 VAL VAL A . n A 1 67 SER 67 235 235 SER SER A . n A 1 68 TYR 68 236 236 TYR TYR A . n A 1 69 SER 69 237 237 SER SER A . n A 1 70 ILE 70 238 238 ILE ILE A . n A 1 71 GLN 71 239 239 GLN GLN A . n A 1 72 LYS 72 240 240 LYS LYS A . n A 1 73 VAL 73 241 241 VAL VAL A . n A 1 74 ILE 74 242 242 ILE ILE A . n A 1 75 GLY 75 243 243 GLY GLY A . n A 1 76 PHE 76 244 244 PHE PHE A . n A 1 77 ALA 77 245 245 ALA ALA A . n A 1 78 LYS 78 246 246 LYS LYS A . n A 1 79 MET 79 247 247 MET MET A . n A 1 80 ILE 80 248 248 ILE ILE A . n A 1 81 PRO 81 249 249 PRO PRO A . n A 1 82 GLY 82 250 250 GLY GLY A . n A 1 83 PHE 83 251 251 PHE PHE A . n A 1 84 ARG 84 252 252 ARG ARG A . n A 1 85 ASP 85 253 253 ASP ASP A . n A 1 86 LEU 86 254 254 LEU LEU A . n A 1 87 THR 87 255 255 THR THR A . n A 1 88 SER 88 256 256 SER SER A . n A 1 89 GLU 89 257 257 GLU GLU A . n A 1 90 ASP 90 258 258 ASP ASP A . n A 1 91 GLN 91 259 259 GLN GLN A . n A 1 92 ILE 92 260 260 ILE ILE A . n A 1 93 VAL 93 261 261 VAL VAL A . n A 1 94 LEU 94 262 262 LEU LEU A . n A 1 95 LEU 95 263 263 LEU LEU A . n A 1 96 LYS 96 264 264 LYS LYS A . n A 1 97 SER 97 265 265 SER SER A . n A 1 98 SER 98 266 266 SER SER A . n A 1 99 ALA 99 267 267 ALA ALA A . n A 1 100 ILE 100 268 268 ILE ILE A . n A 1 101 GLU 101 269 269 GLU GLU A . n A 1 102 VAL 102 270 270 VAL VAL A . n A 1 103 ILE 103 271 271 ILE ILE A . n A 1 104 MET 104 272 272 MET MET A . n A 1 105 LEU 105 273 273 LEU LEU A . n A 1 106 ARG 106 274 274 ARG ARG A . n A 1 107 SER 107 275 275 SER SER A . n A 1 108 ASN 108 276 276 ASN ASN A . n A 1 109 GLU 109 277 277 GLU GLU A . n A 1 110 SER 110 278 278 SER SER A . n A 1 111 PHE 111 279 279 PHE PHE A . n A 1 112 THR 112 280 280 THR THR A . n A 1 113 MET 113 281 281 MET MET A . n A 1 114 ASP 114 282 282 ASP ASP A . n A 1 115 ASP 115 283 283 ASP ASP A . n A 1 116 MET 116 284 284 MET MET A . n A 1 117 SER 117 285 285 SER SER A . n A 1 118 TRP 118 286 286 TRP TRP A . n A 1 119 THR 119 287 287 THR THR A . n A 1 120 CYS 120 288 288 CYS CYS A . n A 1 121 GLY 121 289 289 GLY GLY A . n A 1 122 ASN 122 290 290 ASN ASN A . n A 1 123 GLN 123 291 291 GLN GLN A . n A 1 124 ASP 124 292 292 ASP ASP A . n A 1 125 TYR 125 293 293 TYR TYR A . n A 1 126 LYS 126 294 294 LYS LYS A . n A 1 127 TYR 127 295 295 TYR TYR A . n A 1 128 ARG 128 296 296 ARG ARG A . n A 1 129 VAL 129 297 297 VAL VAL A . n A 1 130 SER 130 298 298 SER SER A . n A 1 131 ASP 131 299 299 ASP ASP A . n A 1 132 VAL 132 300 300 VAL VAL A . n A 1 133 THR 133 301 301 THR THR A . n A 1 134 LYS 134 302 302 LYS LYS A . n A 1 135 ALA 135 303 303 ALA ALA A . n A 1 136 GLY 136 304 304 GLY GLY A . n A 1 137 HIS 137 305 305 HIS HIS A . n A 1 138 SER 138 306 306 SER SER A . n A 1 139 LEU 139 307 307 LEU LEU A . n A 1 140 GLU 140 308 308 GLU GLU A . n A 1 141 LEU 141 309 309 LEU LEU A . n A 1 142 ILE 142 310 310 ILE ILE A . n A 1 143 GLU 143 311 311 GLU GLU A . n A 1 144 PRO 144 312 312 PRO PRO A . n A 1 145 LEU 145 313 313 LEU LEU A . n A 1 146 ILE 146 314 314 ILE ILE A . n A 1 147 LYS 147 315 315 LYS LYS A . n A 1 148 PHE 148 316 316 PHE PHE A . n A 1 149 GLN 149 317 317 GLN GLN A . n A 1 150 VAL 150 318 318 VAL VAL A . n A 1 151 GLY 151 319 319 GLY GLY A . n A 1 152 LEU 152 320 320 LEU LEU A . n A 1 153 LYS 153 321 321 LYS LYS A . n A 1 154 LYS 154 322 322 LYS LYS A . n A 1 155 LEU 155 323 323 LEU LEU A . n A 1 156 ASN 156 324 324 ASN ASN A . n A 1 157 LEU 157 325 325 LEU LEU A . n A 1 158 HIS 158 326 326 HIS HIS A . n A 1 159 GLU 159 327 327 GLU GLU A . n A 1 160 GLU 160 328 328 GLU GLU A . n A 1 161 GLU 161 329 329 GLU GLU A . n A 1 162 HIS 162 330 330 HIS HIS A . n A 1 163 VAL 163 331 331 VAL VAL A . n A 1 164 LEU 164 332 332 LEU LEU A . n A 1 165 LEU 165 333 333 LEU LEU A . n A 1 166 MET 166 334 334 MET MET A . n A 1 167 ALA 167 335 335 ALA ALA A . n A 1 168 ILE 168 336 336 ILE ILE A . n A 1 169 CYS 169 337 337 CYS CYS A . n A 1 170 ILE 170 338 338 ILE ILE A . n A 1 171 VAL 171 339 339 VAL VAL A . n A 1 172 SER 172 340 340 SER SER A . n A 1 173 PRO 173 341 341 PRO PRO A . n A 1 174 ASP 174 342 342 ASP ASP A . n A 1 175 ARG 175 343 343 ARG ARG A . n A 1 176 PRO 176 344 344 PRO PRO A . n A 1 177 GLY 177 345 345 GLY GLY A . n A 1 178 VAL 178 346 346 VAL VAL A . n A 1 179 GLN 179 347 347 GLN GLN A . n A 1 180 ASP 180 348 348 ASP ASP A . n A 1 181 ALA 181 349 349 ALA ALA A . n A 1 182 ALA 182 350 350 ALA ALA A . n A 1 183 LEU 183 351 351 LEU LEU A . n A 1 184 ILE 184 352 352 ILE ILE A . n A 1 185 GLU 185 353 353 GLU GLU A . n A 1 186 ALA 186 354 354 ALA ALA A . n A 1 187 ILE 187 355 355 ILE ILE A . n A 1 188 GLN 188 356 356 GLN GLN A . n A 1 189 ASP 189 357 357 ASP ASP A . n A 1 190 ARG 190 358 358 ARG ARG A . n A 1 191 LEU 191 359 359 LEU LEU A . n A 1 192 SER 192 360 360 SER SER A . n A 1 193 ASN 193 361 361 ASN ASN A . n A 1 194 THR 194 362 362 THR THR A . n A 1 195 LEU 195 363 363 LEU LEU A . n A 1 196 GLN 196 364 364 GLN GLN A . n A 1 197 THR 197 365 365 THR THR A . n A 1 198 TYR 198 366 366 TYR TYR A . n A 1 199 ILE 199 367 367 ILE ILE A . n A 1 200 ARG 200 368 368 ARG ARG A . n A 1 201 CYS 201 369 369 CYS CYS A . n A 1 202 ARG 202 370 370 ARG ARG A . n A 1 203 HIS 203 371 371 HIS HIS A . n A 1 204 PRO 204 372 372 PRO PRO A . n A 1 205 PRO 205 373 373 PRO PRO A . n A 1 206 PRO 206 374 374 PRO PRO A . n A 1 207 GLY 207 375 ? ? ? A . n A 1 208 SER 208 376 ? ? ? A . n A 1 209 HIS 209 377 ? ? ? A . n A 1 210 LEU 210 378 378 LEU LEU A . n A 1 211 LEU 211 379 379 LEU LEU A . n A 1 212 TYR 212 380 380 TYR TYR A . n A 1 213 ALA 213 381 381 ALA ALA A . n A 1 214 LYS 214 382 382 LYS LYS A . n A 1 215 MET 215 383 383 MET MET A . n A 1 216 ILE 216 384 384 ILE ILE A . n A 1 217 GLN 217 385 385 GLN GLN A . n A 1 218 LYS 218 386 386 LYS LYS A . n A 1 219 LEU 219 387 387 LEU LEU A . n A 1 220 ALA 220 388 388 ALA ALA A . n A 1 221 ASP 221 389 389 ASP ASP A . n A 1 222 LEU 222 390 390 LEU LEU A . n A 1 223 ARG 223 391 391 ARG ARG A . n A 1 224 SER 224 392 392 SER SER A . n A 1 225 LEU 225 393 393 LEU LEU A . n A 1 226 ASN 226 394 394 ASN ASN A . n A 1 227 GLU 227 395 395 GLU GLU A . n A 1 228 GLU 228 396 396 GLU GLU A . n A 1 229 HIS 229 397 397 HIS HIS A . n A 1 230 SER 230 398 398 SER SER A . n A 1 231 LYS 231 399 399 LYS LYS A . n A 1 232 GLN 232 400 400 GLN GLN A . n A 1 233 TYR 233 401 401 TYR TYR A . n A 1 234 ARG 234 402 402 ARG ARG A . n A 1 235 CYS 235 403 403 CYS CYS A . n A 1 236 LEU 236 404 404 LEU LEU A . n A 1 237 SER 237 405 405 SER SER A . n A 1 238 PHE 238 406 406 PHE PHE A . n A 1 239 GLN 239 407 407 GLN GLN A . n A 1 240 PRO 240 408 408 PRO PRO A . n A 1 241 GLU 241 409 409 GLU GLU A . n A 1 242 CYS 242 410 410 CYS CYS A . n A 1 243 SER 243 411 411 SER SER A . n A 1 244 MET 244 412 412 MET MET A . n A 1 245 LYS 245 413 413 LYS LYS A . n A 1 246 LEU 246 414 414 LEU LEU A . n A 1 247 THR 247 415 415 THR THR A . n A 1 248 PRO 248 416 416 PRO PRO A . n A 1 249 LEU 249 417 417 LEU LEU A . n A 1 250 VAL 250 418 418 VAL VAL A . n A 1 251 LEU 251 419 419 LEU LEU A . n A 1 252 GLU 252 420 420 GLU GLU A . n A 1 253 VAL 253 421 421 VAL VAL A . n A 1 254 PHE 254 422 422 PHE PHE A . n A 1 255 GLY 255 423 423 GLY GLY A . n A 1 256 ASN 256 424 ? ? ? A . n A 1 257 GLU 257 425 ? ? ? A . n A 1 258 ILE 258 426 ? ? ? A . n A 1 259 SER 259 427 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VDX 1 428 425 VDX VDX A . C 3 HOH 1 500 500 HOH TIP A . C 3 HOH 2 501 501 HOH TIP A . C 3 HOH 3 502 502 HOH TIP A . C 3 HOH 4 503 503 HOH TIP A . C 3 HOH 5 504 504 HOH TIP A . C 3 HOH 6 505 505 HOH TIP A . C 3 HOH 7 506 506 HOH TIP A . C 3 HOH 8 507 507 HOH TIP A . C 3 HOH 9 508 508 HOH TIP A . C 3 HOH 10 509 509 HOH TIP A . C 3 HOH 11 510 510 HOH TIP A . C 3 HOH 12 511 511 HOH TIP A . C 3 HOH 13 512 512 HOH TIP A . C 3 HOH 14 513 513 HOH TIP A . C 3 HOH 15 514 514 HOH TIP A . C 3 HOH 16 515 515 HOH TIP A . C 3 HOH 17 516 516 HOH TIP A . C 3 HOH 18 517 517 HOH TIP A . C 3 HOH 19 518 518 HOH TIP A . C 3 HOH 20 519 519 HOH TIP A . C 3 HOH 21 520 520 HOH TIP A . C 3 HOH 22 521 521 HOH TIP A . C 3 HOH 23 522 522 HOH TIP A . C 3 HOH 24 523 523 HOH TIP A . C 3 HOH 25 524 524 HOH TIP A . C 3 HOH 26 525 525 HOH TIP A . C 3 HOH 27 526 526 HOH TIP A . C 3 HOH 28 527 527 HOH TIP A . C 3 HOH 29 528 528 HOH TIP A . C 3 HOH 30 529 529 HOH TIP A . C 3 HOH 31 530 530 HOH TIP A . C 3 HOH 32 531 531 HOH TIP A . C 3 HOH 33 532 532 HOH TIP A . C 3 HOH 34 533 533 HOH TIP A . C 3 HOH 35 534 534 HOH TIP A . C 3 HOH 36 535 535 HOH TIP A . C 3 HOH 37 536 536 HOH TIP A . C 3 HOH 38 537 537 HOH TIP A . C 3 HOH 39 538 538 HOH TIP A . C 3 HOH 40 539 539 HOH TIP A . C 3 HOH 41 540 540 HOH TIP A . C 3 HOH 42 541 541 HOH TIP A . C 3 HOH 43 542 542 HOH TIP A . C 3 HOH 44 543 543 HOH TIP A . C 3 HOH 45 544 544 HOH TIP A . C 3 HOH 46 545 545 HOH TIP A . C 3 HOH 47 546 546 HOH TIP A . C 3 HOH 48 547 547 HOH TIP A . C 3 HOH 49 548 548 HOH TIP A . C 3 HOH 50 549 549 HOH TIP A . C 3 HOH 51 550 550 HOH TIP A . C 3 HOH 52 551 551 HOH TIP A . C 3 HOH 53 552 552 HOH TIP A . C 3 HOH 54 553 553 HOH TIP A . C 3 HOH 55 554 554 HOH TIP A . C 3 HOH 56 556 556 HOH TIP A . C 3 HOH 57 557 557 HOH TIP A . C 3 HOH 58 558 558 HOH TIP A . C 3 HOH 59 559 559 HOH TIP A . C 3 HOH 60 560 560 HOH TIP A . C 3 HOH 61 561 561 HOH TIP A . C 3 HOH 62 562 562 HOH TIP A . C 3 HOH 63 563 563 HOH TIP A . C 3 HOH 64 564 564 HOH TIP A . C 3 HOH 65 565 565 HOH TIP A . C 3 HOH 66 566 566 HOH TIP A . C 3 HOH 67 567 567 HOH TIP A . C 3 HOH 68 568 568 HOH TIP A . C 3 HOH 69 569 569 HOH TIP A . C 3 HOH 70 570 570 HOH TIP A . C 3 HOH 71 571 571 HOH TIP A . C 3 HOH 72 572 572 HOH TIP A . C 3 HOH 73 573 573 HOH TIP A . C 3 HOH 74 574 574 HOH TIP A . C 3 HOH 75 575 575 HOH TIP A . C 3 HOH 76 576 576 HOH TIP A . C 3 HOH 77 577 577 HOH TIP A . C 3 HOH 78 578 578 HOH TIP A . C 3 HOH 79 579 579 HOH TIP A . C 3 HOH 80 580 580 HOH TIP A . C 3 HOH 81 581 581 HOH TIP A . C 3 HOH 82 582 582 HOH TIP A . C 3 HOH 83 583 583 HOH TIP A . C 3 HOH 84 584 584 HOH TIP A . C 3 HOH 85 585 585 HOH TIP A . C 3 HOH 86 586 586 HOH TIP A . C 3 HOH 87 587 587 HOH TIP A . C 3 HOH 88 588 588 HOH TIP A . C 3 HOH 89 589 589 HOH TIP A . C 3 HOH 90 590 590 HOH TIP A . C 3 HOH 91 591 591 HOH TIP A . C 3 HOH 92 592 592 HOH TIP A . C 3 HOH 93 593 593 HOH TIP A . C 3 HOH 94 594 594 HOH TIP A . C 3 HOH 95 595 595 HOH TIP A . C 3 HOH 96 596 596 HOH TIP A . C 3 HOH 97 597 597 HOH TIP A . C 3 HOH 98 598 598 HOH TIP A . C 3 HOH 99 599 599 HOH TIP A . C 3 HOH 100 600 600 HOH TIP A . C 3 HOH 101 601 601 HOH TIP A . C 3 HOH 102 602 602 HOH TIP A . C 3 HOH 103 603 603 HOH TIP A . C 3 HOH 104 604 604 HOH TIP A . C 3 HOH 105 605 605 HOH TIP A . C 3 HOH 106 606 606 HOH TIP A . C 3 HOH 107 607 607 HOH TIP A . C 3 HOH 108 608 608 HOH TIP A . C 3 HOH 109 609 609 HOH TIP A . C 3 HOH 110 610 610 HOH TIP A . C 3 HOH 111 611 611 HOH TIP A . C 3 HOH 112 612 612 HOH TIP A . C 3 HOH 113 613 613 HOH TIP A . C 3 HOH 114 614 614 HOH TIP A . C 3 HOH 115 615 615 HOH TIP A . C 3 HOH 116 616 616 HOH TIP A . C 3 HOH 117 617 617 HOH TIP A . C 3 HOH 118 618 618 HOH TIP A . C 3 HOH 119 619 619 HOH TIP A . C 3 HOH 120 620 620 HOH TIP A . C 3 HOH 121 621 621 HOH TIP A . C 3 HOH 122 622 622 HOH TIP A . C 3 HOH 123 623 623 HOH TIP A . C 3 HOH 124 624 624 HOH TIP A . C 3 HOH 125 625 625 HOH TIP A . C 3 HOH 126 626 626 HOH TIP A . C 3 HOH 127 627 627 HOH TIP A . C 3 HOH 128 628 628 HOH TIP A . C 3 HOH 129 629 629 HOH TIP A . C 3 HOH 130 630 630 HOH TIP A . C 3 HOH 131 631 631 HOH TIP A . C 3 HOH 132 632 632 HOH TIP A . C 3 HOH 133 633 633 HOH TIP A . C 3 HOH 134 634 634 HOH TIP A . C 3 HOH 135 635 635 HOH TIP A . C 3 HOH 136 636 636 HOH TIP A . C 3 HOH 137 637 637 HOH TIP A . C 3 HOH 138 638 638 HOH TIP A . C 3 HOH 139 639 639 HOH TIP A . C 3 HOH 140 640 640 HOH TIP A . C 3 HOH 141 641 641 HOH TIP A . C 3 HOH 142 642 642 HOH TIP A . C 3 HOH 143 644 644 HOH TIP A . C 3 HOH 144 645 645 HOH TIP A . C 3 HOH 145 646 646 HOH TIP A . C 3 HOH 146 647 647 HOH TIP A . C 3 HOH 147 648 648 HOH TIP A . C 3 HOH 148 649 649 HOH TIP A . C 3 HOH 149 650 650 HOH TIP A . C 3 HOH 150 651 651 HOH TIP A . C 3 HOH 151 652 652 HOH TIP A . C 3 HOH 152 653 653 HOH TIP A . C 3 HOH 153 654 654 HOH TIP A . C 3 HOH 154 655 655 HOH TIP A . C 3 HOH 155 656 656 HOH TIP A . C 3 HOH 156 657 657 HOH TIP A . C 3 HOH 157 658 658 HOH TIP A . C 3 HOH 158 659 659 HOH TIP A . C 3 HOH 159 660 660 HOH TIP A . C 3 HOH 160 661 661 HOH TIP A . C 3 HOH 161 662 662 HOH TIP A . C 3 HOH 162 663 663 HOH TIP A . C 3 HOH 163 664 664 HOH TIP A . C 3 HOH 164 665 665 HOH TIP A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 1DB1 _cell.length_a 45.193 _cell.length_b 52.443 _cell.length_c 133.286 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DB1 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1DB1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 4 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.20 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, mes, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-07-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8345 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline BW7B _diffrn_source.pdbx_wavelength 0.8345 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DB1 _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.8 _reflns.number_obs 29434 _reflns.number_all 30148 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs 0.0610000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.1 _reflns.B_iso_Wilson_estimate 26.0 _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 95.3 _reflns_shell.Rmerge_I_obs 0.2400000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DB1 _refine.ls_number_reflns_obs 28808 _refine.ls_number_reflns_all 30148 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.8 _refine.ls_percent_reflns_obs 95.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1910000 _refine.ls_R_factor_R_free 0.2140000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 2879 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1992 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 164 _refine_hist.number_atoms_total 2186 _refine_hist.d_res_high 1.8 _refine_hist.d_res_low 20.0 # _database_PDB_matrix.entry_id 1DB1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DB1 _struct.title 'CRYSTAL STRUCTURE OF THE NUCLEAR RECEPTOR FOR VITAMIN D COMPLEXED TO VITAMIN D' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DB1 _struct_keywords.pdbx_keywords 'GENE REGULATION' _struct_keywords.text 'COMPLEX, GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VDR_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P11473 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DB1 A 1 ? 47 ? P11473 118 ? 164 ? 118 164 2 1 1DB1 A 48 ? 259 ? P11473 216 ? 427 ? 216 427 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? TYR A 26 ? SER A 125 TYR A 143 1 ? 19 HELX_P HELX_P2 2 ASP A 32 ? PHE A 36 ? ASP A 149 PHE A 153 5 ? 5 HELX_P HELX_P3 3 SER A 48 ? LEU A 56 ? SER A 216 LEU A 224 1 ? 9 HELX_P HELX_P4 4 MET A 58 ? MET A 79 ? MET A 226 MET A 247 1 ? 22 HELX_P HELX_P5 5 GLY A 82 ? LEU A 86 ? GLY A 250 LEU A 254 5 ? 5 HELX_P HELX_P6 6 THR A 87 ? SER A 107 ? THR A 255 SER A 275 1 ? 21 HELX_P HELX_P7 7 ASN A 122 ? ASP A 124 ? ASN A 290 ASP A 292 5 ? 3 HELX_P HELX_P8 8 ARG A 128 ? LYS A 134 ? ARG A 296 LYS A 302 1 ? 7 HELX_P HELX_P9 9 SER A 138 ? LEU A 155 ? SER A 306 LEU A 323 1 ? 18 HELX_P HELX_P10 10 HIS A 158 ? VAL A 171 ? HIS A 326 VAL A 339 1 ? 14 HELX_P HELX_P11 11 ASP A 180 ? HIS A 203 ? ASP A 348 HIS A 371 1 ? 24 HELX_P HELX_P12 12 LEU A 210 ? PHE A 238 ? LEU A 378 PHE A 406 1 ? 29 HELX_P HELX_P13 13 CYS A 242 ? LEU A 246 ? CYS A 410 LEU A 414 5 ? 5 HELX_P HELX_P14 14 THR A 247 ? GLY A 255 ? THR A 415 GLY A 423 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 205 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 373 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 206 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 374 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.13 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 111 ? THR A 112 ? PHE A 279 THR A 280 A 2 SER A 117 ? THR A 119 ? SER A 285 THR A 287 A 3 LYS A 126 ? TYR A 127 ? LYS A 294 TYR A 295 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 112 ? N THR A 280 O SER A 117 ? O SER A 285 A 2 3 O TRP A 118 ? O TRP A 286 N TYR A 127 ? N TYR A 295 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id VDX _struct_site.pdbx_auth_seq_id 428 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE VDX A 428' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 TYR A 26 ? TYR A 143 . ? 1_555 ? 2 AC1 12 LEU A 59 ? LEU A 227 . ? 1_555 ? 3 AC1 12 LEU A 65 ? LEU A 233 . ? 1_555 ? 4 AC1 12 VAL A 66 ? VAL A 234 . ? 1_555 ? 5 AC1 12 SER A 69 ? SER A 237 . ? 1_555 ? 6 AC1 12 ARG A 106 ? ARG A 274 . ? 1_555 ? 7 AC1 12 SER A 107 ? SER A 275 . ? 1_555 ? 8 AC1 12 SER A 110 ? SER A 278 . ? 1_555 ? 9 AC1 12 TRP A 118 ? TRP A 286 . ? 1_555 ? 10 AC1 12 CYS A 120 ? CYS A 288 . ? 1_555 ? 11 AC1 12 HIS A 137 ? HIS A 305 . ? 1_555 ? 12 AC1 12 HIS A 229 ? HIS A 397 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LEU _pdbx_validate_rmsd_bond.auth_seq_id_1 378 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LEU _pdbx_validate_rmsd_bond.auth_seq_id_2 379 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.561 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.225 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 161 ? ? -154.99 49.86 2 1 CYS A 288 ? ? -114.77 51.04 3 1 ASP A 342 ? ? -97.01 40.92 4 1 LEU A 414 ? ? -106.91 -156.16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 118 ? A ASP 1 2 1 Y 1 A SER 119 ? A SER 2 3 1 Y 1 A GLY 375 ? A GLY 207 4 1 Y 1 A SER 376 ? A SER 208 5 1 Y 1 A HIS 377 ? A HIS 209 6 1 Y 1 A ASN 424 ? A ASN 256 7 1 Y 1 A GLU 425 ? A GLU 257 8 1 Y 1 A ILE 426 ? A ILE 258 9 1 Y 1 A SER 427 ? A SER 259 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 VDX O2 O N N 391 VDX O3 O N N 392 VDX C1 C N S 393 VDX C2 C N N 394 VDX C3 C N R 395 VDX C4 C N N 396 VDX C5 C N N 397 VDX C6 C N N 398 VDX C7 C N N 399 VDX C8 C N N 400 VDX C9 C N N 401 VDX C10 C N N 402 VDX C11 C N N 403 VDX C12 C N N 404 VDX C13 C N R 405 VDX C14 C N S 406 VDX C15 C N N 407 VDX C16 C N N 408 VDX C17 C N R 409 VDX C18 C N N 410 VDX C19 C N N 411 VDX C20 C N R 412 VDX C21 C N N 413 VDX C22 C N N 414 VDX C23 C N N 415 VDX C24 C N N 416 VDX C25 C N N 417 VDX C26 C N N 418 VDX C27 C N N 419 VDX O1 O N N 420 VDX HO2 H N N 421 VDX HO3 H N N 422 VDX H11 H N N 423 VDX H21 H N N 424 VDX H22 H N N 425 VDX H31 H N N 426 VDX H41 H N N 427 VDX H42 H N N 428 VDX H61 H N N 429 VDX H71 H N N 430 VDX H91 H N N 431 VDX H92 H N N 432 VDX H111 H N N 433 VDX H112 H N N 434 VDX H121 H N N 435 VDX H122 H N N 436 VDX H141 H N N 437 VDX H151 H N N 438 VDX H152 H N N 439 VDX H161 H N N 440 VDX H162 H N N 441 VDX H171 H N N 442 VDX H181 H N N 443 VDX H182 H N N 444 VDX H183 H N N 445 VDX H191 H N N 446 VDX H192 H N N 447 VDX H201 H N N 448 VDX H211 H N N 449 VDX H212 H N N 450 VDX H213 H N N 451 VDX H221 H N N 452 VDX H222 H N N 453 VDX H231 H N N 454 VDX H232 H N N 455 VDX H241 H N N 456 VDX H242 H N N 457 VDX H261 H N N 458 VDX H262 H N N 459 VDX H263 H N N 460 VDX H271 H N N 461 VDX H272 H N N 462 VDX H273 H N N 463 VDX HO1 H N N 464 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 VDX O2 C3 sing N N 376 VDX O2 HO2 sing N N 377 VDX O3 C25 sing N N 378 VDX O3 HO3 sing N N 379 VDX C1 C2 sing N N 380 VDX C1 C10 sing N N 381 VDX C1 O1 sing N N 382 VDX C1 H11 sing N N 383 VDX C2 C3 sing N N 384 VDX C2 H21 sing N N 385 VDX C2 H22 sing N N 386 VDX C3 C4 sing N N 387 VDX C3 H31 sing N N 388 VDX C4 C5 sing N N 389 VDX C4 H41 sing N N 390 VDX C4 H42 sing N N 391 VDX C5 C6 doub N Z 392 VDX C5 C10 sing N N 393 VDX C6 C7 sing N N 394 VDX C6 H61 sing N N 395 VDX C7 C8 doub N E 396 VDX C7 H71 sing N N 397 VDX C8 C9 sing N N 398 VDX C8 C14 sing N N 399 VDX C9 C11 sing N N 400 VDX C9 H91 sing N N 401 VDX C9 H92 sing N N 402 VDX C10 C19 doub N N 403 VDX C11 C12 sing N N 404 VDX C11 H111 sing N N 405 VDX C11 H112 sing N N 406 VDX C12 C13 sing N N 407 VDX C12 H121 sing N N 408 VDX C12 H122 sing N N 409 VDX C13 C14 sing N N 410 VDX C13 C17 sing N N 411 VDX C13 C18 sing N N 412 VDX C14 C15 sing N N 413 VDX C14 H141 sing N N 414 VDX C15 C16 sing N N 415 VDX C15 H151 sing N N 416 VDX C15 H152 sing N N 417 VDX C16 C17 sing N N 418 VDX C16 H161 sing N N 419 VDX C16 H162 sing N N 420 VDX C17 C20 sing N N 421 VDX C17 H171 sing N N 422 VDX C18 H181 sing N N 423 VDX C18 H182 sing N N 424 VDX C18 H183 sing N N 425 VDX C19 H191 sing N N 426 VDX C19 H192 sing N N 427 VDX C20 C21 sing N N 428 VDX C20 C22 sing N N 429 VDX C20 H201 sing N N 430 VDX C21 H211 sing N N 431 VDX C21 H212 sing N N 432 VDX C21 H213 sing N N 433 VDX C22 C23 sing N N 434 VDX C22 H221 sing N N 435 VDX C22 H222 sing N N 436 VDX C23 C24 sing N N 437 VDX C23 H231 sing N N 438 VDX C23 H232 sing N N 439 VDX C24 C25 sing N N 440 VDX C24 H241 sing N N 441 VDX C24 H242 sing N N 442 VDX C25 C26 sing N N 443 VDX C25 C27 sing N N 444 VDX C26 H261 sing N N 445 VDX C26 H262 sing N N 446 VDX C26 H263 sing N N 447 VDX C27 H271 sing N N 448 VDX C27 H272 sing N N 449 VDX C27 H273 sing N N 450 VDX O1 HO1 sing N N 451 # _atom_sites.entry_id 1DB1 _atom_sites.fract_transf_matrix[1][1] 0.022127 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019068 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007503 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_