HEADER LYASE 03-NOV-99 1DBO TITLE CRYSTAL STRUCTURE OF CHONDROITINASE B CAVEAT 1DBO MXY B 4 HAS WRONG CHIRALITY AT ATOM C1 GC4 C 2 HAS WRONG CAVEAT 2 1DBO CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHONDROITINASE B; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEDOBACTER HEPARINUS; SOURCE 3 ORGANISM_TAXID: 984 KEYWDS ACTIVE SITE, BETA-ELIMINATION, DEMATAN SULFATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.HUANG,A.MATTE,Y.LI,Y.S.KIM,R.J.LINHARDT,H.SU,M.CYGLER REVDAT 6 30-OCT-24 1DBO 1 HETSYN LINK REVDAT 5 29-JUL-20 1DBO 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 16-SEP-15 1DBO 1 HET HETATM HETNAM LINK REVDAT 4 2 1 SITE VERSN REMARK REVDAT 3 24-FEB-09 1DBO 1 VERSN REVDAT 2 26-SEP-01 1DBO 1 LINK CONECT REVDAT 1 12-JAN-00 1DBO 0 JRNL AUTH W.HUANG,A.MATTE,Y.LI,Y.S.KIM,R.J.LINHARDT,H.SU,M.CYGLER JRNL TITL CRYSTAL STRUCTURE OF CHONDROITINASE B FROM FLAVOBACTERIUM JRNL TITL 2 HEPARINUM AND ITS COMPLEX WITH A DISACCHARIDE PRODUCT AT 1.7 JRNL TITL 3 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 294 1257 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10600383 JRNL DOI 10.1006/JMBI.1999.3292 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 44083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1333 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 475 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24900 REMARK 3 B22 (A**2) : 0.51500 REMARK 3 B33 (A**2) : -0.26500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.750 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DBO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.12900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, 2-METHYL-2,4-PENTADIOL, REMARK 280 AMMONIUM ACETATE, TRIS, PH 8.7, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 MET A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 TYR A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 ILE A 14 REMARK 465 MET A 15 REMARK 465 VAL A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 ASN A 19 REMARK 465 VAL A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 CYS A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 26 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 189 N VAL A 191 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 710 O HOH A 781 2656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 148 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 88 140.11 -174.54 REMARK 500 ASN A 107 43.77 -160.80 REMARK 500 HIS A 116 8.61 80.05 REMARK 500 CYS A 137 58.39 35.76 REMARK 500 ASP A 139 -159.47 -158.38 REMARK 500 SER A 143 171.17 173.98 REMARK 500 ASP A 174 163.46 84.55 REMARK 500 LYS A 187 -161.12 83.38 REMARK 500 ASP A 188 42.44 71.39 REMARK 500 SER A 190 -23.88 -22.16 REMARK 500 TYR A 222 -39.81 -130.46 REMARK 500 ASN A 358 52.22 -157.73 REMARK 500 PRO A 393 39.96 -66.59 REMARK 500 PRO A 424 74.05 -69.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 293 GLY A 294 30.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MXY B 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DBG RELATED DB: PDB REMARK 900 1DBG IS THE NATIVE PROTEIN DBREF 1DBO A 1 506 GB U27584 U27584 1 506 SEQRES 1 A 506 MET LYS MET LEU ASN LYS LEU ALA GLY TYR LEU LEU PRO SEQRES 2 A 506 ILE MET VAL LEU LEU ASN VAL ALA PRO CYS LEU GLY GLN SEQRES 3 A 506 VAL VAL ALA SER ASN GLU THR LEU TYR GLN VAL VAL LYS SEQRES 4 A 506 GLU VAL LYS PRO GLY GLY LEU VAL GLN ILE ALA ASP GLY SEQRES 5 A 506 THR TYR LYS ASP VAL GLN LEU ILE VAL SER ASN SER GLY SEQRES 6 A 506 LYS SER GLY LEU PRO ILE THR ILE LYS ALA LEU ASN PRO SEQRES 7 A 506 GLY LYS VAL PHE PHE THR GLY ASP ALA LYS VAL GLU LEU SEQRES 8 A 506 ARG GLY GLU HIS LEU ILE LEU GLU GLY ILE TRP PHE LYS SEQRES 9 A 506 ASP GLY ASN ARG ALA ILE GLN ALA TRP LYS SER HIS GLY SEQRES 10 A 506 PRO GLY LEU VAL ALA ILE TYR GLY SER TYR ASN ARG ILE SEQRES 11 A 506 THR ALA CYS VAL PHE ASP CYS PHE ASP GLU ALA ASN SER SEQRES 12 A 506 ALA TYR ILE THR THR SER LEU THR GLU ASP GLY LYS VAL SEQRES 13 A 506 PRO GLN HIS CYS ARG ILE ASP HIS CYS SER PHE THR ASP SEQRES 14 A 506 LYS ILE THR PHE ASP GLN VAL ILE ASN LEU ASN ASN THR SEQRES 15 A 506 ALA ARG ALA ILE LYS ASP GLY SER VAL GLY GLY PRO GLY SEQRES 16 A 506 MET TYR HIS ARG VAL ASP HIS CYS PHE PHE SER ASN PRO SEQRES 17 A 506 GLN LYS PRO GLY ASN ALA GLY GLY GLY ILE ARG ILE GLY SEQRES 18 A 506 TYR TYR ARG ASN ASP ILE GLY ARG CYS LEU VAL ASP SER SEQRES 19 A 506 ASN LEU PHE MET ARG GLN ASP SER GLU ALA GLU ILE ILE SEQRES 20 A 506 THR SER LYS SER GLN GLU ASN VAL TYR TYR GLY ASN THR SEQRES 21 A 506 TYR LEU ASN CYS GLN GLY THR MET ASN PHE ARG HIS GLY SEQRES 22 A 506 ASP HIS GLN VAL ALA ILE ASN ASN PHE TYR ILE GLY ASN SEQRES 23 A 506 ASP GLN ARG PHE GLY TYR GLY GLY MET PHE VAL TRP GLY SEQRES 24 A 506 SER ARG HIS VAL ILE ALA CYS ASN TYR PHE GLU LEU SER SEQRES 25 A 506 GLU THR ILE LYS SER ARG GLY ASN ALA ALA LEU TYR LEU SEQRES 26 A 506 ASN PRO GLY ALA MET ALA SER GLU HIS ALA LEU ALA PHE SEQRES 27 A 506 ASP MET LEU ILE ALA ASN ASN ALA PHE ILE ASN VAL ASN SEQRES 28 A 506 GLY TYR ALA ILE HIS PHE ASN PRO LEU ASP GLU ARG ARG SEQRES 29 A 506 LYS GLU TYR CYS ALA ALA ASN ARG LEU LYS PHE GLU THR SEQRES 30 A 506 PRO HIS GLN LEU MET LEU LYS GLY ASN LEU PHE PHE LYS SEQRES 31 A 506 ASP LYS PRO TYR VAL TYR PRO PHE PHE LYS ASP ASP TYR SEQRES 32 A 506 PHE ILE ALA GLY LYS ASN SER TRP THR GLY ASN VAL ALA SEQRES 33 A 506 LEU GLY VAL GLU LYS GLY ILE PRO VAL ASN ILE SER ALA SEQRES 34 A 506 ASN ARG SER ALA TYR LYS PRO VAL LYS ILE LYS ASP ILE SEQRES 35 A 506 GLN PRO ILE GLU GLY ILE ALA LEU ASP LEU ASN ALA LEU SEQRES 36 A 506 ILE SER LYS GLY ILE THR GLY LYS PRO LEU SER TRP ASP SEQRES 37 A 506 GLU VAL ARG PRO TYR TRP LEU LYS GLU MET PRO GLY THR SEQRES 38 A 506 TYR ALA LEU THR ALA ARG LEU SER ALA ASP ARG ALA ALA SEQRES 39 A 506 LYS PHE LYS ALA VAL ILE LYS ARG ASN LYS GLU HIS MODRES 1DBO SER A 234 SER GLYCOSYLATION SITE HET MAN B 1 11 HET GCU B 2 12 HET XYP B 3 9 HET MXY B 4 10 HET G4D B 5 10 HET BGC B 6 11 HET RAM B 7 10 HET ASG C 1 19 HET GC4 C 2 11 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GCU ALPHA-D-GLUCOPYRANURONIC ACID HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MXY 2-O-METHYL-BETA-L-FUCOPYRANOSE HETNAM G4D 4-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM ASG 2-ACETAMIDO-2-DEOXY-4-O-SULFO-BETA-D-GALACTOPYRANOSE HETNAM GC4 4-DEOXY-BETA-D-GLUCOPYRANURONIC ACID HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GCU ALPHA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 GCU ACID HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN MXY 2-O-METHYL FUCOSE; 2-O-METHYL-BETA-L-FUCOSE; 2-O- HETSYN 2 MXY METHYL-L-FUCOSE; 2-O-METHYL-FUCOSE HETSYN G4D 4-DEOXY-ALPHA-D-GLUCOSE; 4-DEOXY-D-GLUCOSE; 4-DEOXY- HETSYN 2 G4D GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN ASG 2-DEOXY-2-ACETAMIDO-BETA-D-GALACTOSE-4-SULFATE; N- HETSYN 2 ASG ACETYL-4-O-SULFO-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2- HETSYN 3 ASG DEOXY-4-O-SULFO-BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY- HETSYN 4 ASG 4-O-SULFO-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-4-O-SULFO- HETSYN 5 ASG GALACTOSE HETSYN GC4 4-DEOXY-D-GLUCURONIC ACID; 4-DEOXY-BETA-D-GLUCURONIC HETSYN 2 GC4 ACID; 4-DEOXY-GLUCURONIC ACID FORMUL 2 MAN C6 H12 O6 FORMUL 2 GCU C6 H10 O7 FORMUL 2 XYP C5 H10 O5 FORMUL 2 MXY C7 H14 O5 FORMUL 2 G4D C6 H12 O5 FORMUL 2 BGC C6 H12 O6 FORMUL 2 RAM C6 H12 O5 FORMUL 3 ASG C8 H15 N O9 S FORMUL 3 GC4 C6 H10 O6 FORMUL 4 HOH *475(H2 O) HELIX 1 1 SER A 30 VAL A 41 1 12 HELIX 2 2 LEU A 360 ASN A 371 1 12 HELIX 3 3 ASN A 430 TYR A 434 5 5 HELIX 4 4 ASP A 451 GLY A 459 1 9 HELIX 5 5 SER A 466 VAL A 470 5 5 HELIX 6 6 THR A 481 ALA A 486 1 6 HELIX 7 7 SER A 489 ASN A 503 1 15 SHEET 1 A14 VAL A 27 VAL A 28 0 SHEET 2 A14 LEU A 46 ILE A 49 1 O GLN A 48 N VAL A 28 SHEET 3 A14 ILE A 71 ALA A 75 1 O THR A 72 N VAL A 47 SHEET 4 A14 LEU A 96 GLU A 99 1 O ILE A 97 N ILE A 73 SHEET 5 A14 ARG A 129 THR A 131 1 N ARG A 129 O LEU A 96 SHEET 6 A14 ARG A 161 ASP A 163 1 O ARG A 161 N ILE A 130 SHEET 7 A14 ARG A 199 ASP A 201 1 O ARG A 199 N ILE A 162 SHEET 8 A14 LEU A 231 ASP A 233 1 O LEU A 231 N VAL A 200 SHEET 9 A14 VAL A 255 TYR A 257 1 O VAL A 255 N VAL A 232 SHEET 10 A14 VAL A 277 ILE A 279 1 O VAL A 277 N TYR A 256 SHEET 11 A14 VAL A 303 ALA A 305 1 O VAL A 303 N ALA A 278 SHEET 12 A14 MET A 340 ALA A 343 1 O LEU A 341 N ILE A 304 SHEET 13 A14 LEU A 381 LYS A 384 1 O MET A 382 N ILE A 342 SHEET 14 A14 SER A 410 THR A 412 1 O SER A 410 N LEU A 383 SHEET 1 B13 GLY A 52 LYS A 55 0 SHEET 2 B13 VAL A 81 GLY A 85 1 O PHE A 82 N TYR A 54 SHEET 3 B13 TRP A 102 GLY A 106 1 O TRP A 102 N PHE A 83 SHEET 4 B13 VAL A 134 ASP A 136 1 O VAL A 134 N PHE A 103 SHEET 5 B13 SER A 166 THR A 168 1 O SER A 166 N PHE A 135 SHEET 6 B13 PHE A 204 ASN A 207 1 O PHE A 204 N PHE A 167 SHEET 7 B13 LEU A 236 GLN A 240 1 O LEU A 236 N PHE A 205 SHEET 8 B13 THR A 260 LEU A 262 1 O THR A 260 N PHE A 237 SHEET 9 B13 PHE A 282 GLY A 285 1 O PHE A 282 N TYR A 261 SHEET 10 B13 TYR A 308 LEU A 311 1 O TYR A 308 N TYR A 283 SHEET 11 B13 ALA A 346 ILE A 348 1 O ALA A 346 N PHE A 309 SHEET 12 B13 LEU A 387 PHE A 389 1 O LEU A 387 N PHE A 347 SHEET 13 B13 VAL A 415 LEU A 417 1 O VAL A 415 N PHE A 388 SHEET 1 C12 GLN A 58 VAL A 61 0 SHEET 2 C12 LYS A 88 LEU A 91 1 O LYS A 88 N LEU A 59 SHEET 3 C12 VAL A 121 ILE A 123 1 N ALA A 122 O VAL A 89 SHEET 4 C12 ILE A 146 THR A 148 1 O THR A 147 N ILE A 123 SHEET 5 C12 ILE A 177 LEU A 179 1 N ASN A 178 O ILE A 146 SHEET 6 C12 ILE A 218 ILE A 220 1 O ARG A 219 N LEU A 179 SHEET 7 C12 GLU A 245 LYS A 250 1 O ILE A 246 N ILE A 218 SHEET 8 C12 THR A 267 HIS A 272 1 O THR A 267 N ILE A 246 SHEET 9 C12 MET A 295 VAL A 297 1 O PHE A 296 N PHE A 270 SHEET 10 C12 ALA A 321 LEU A 325 1 O ALA A 322 N MET A 295 SHEET 11 C12 TYR A 353 HIS A 356 1 O TYR A 353 N ALA A 322 SHEET 12 C12 PHE A 399 LYS A 400 1 N LYS A 400 O ILE A 355 LINK OG SER A 234 C1 MAN B 1 1555 1555 1.38 LINK O2 MAN B 1 C1 GCU B 2 1555 1555 1.45 LINK O4 MAN B 1 C1 RAM B 7 1555 1555 1.44 LINK O4 GCU B 2 C1 XYP B 3 1555 1555 1.41 LINK O4 XYP B 3 C1 MXY B 4 1555 1555 1.42 LINK O3 MXY B 4 C1 G4D B 5 1555 1555 1.45 LINK O4 MXY B 4 C1 BGC B 6 1555 1555 1.43 LINK O3 ASG C 1 C1 GC4 C 2 1555 1555 1.43 CRYST1 50.600 74.400 58.700 90.00 92.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019763 0.000000 0.001001 0.00000 SCALE2 0.000000 0.013441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017058 0.00000