HEADER OXIDOREDUCTASE 04-NOV-99 1DC4 TITLE STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE FROM TITLE 2 ESCHERICHIA COLI: DIRECT EVIDENCE FOR SUBSTRATE BINDING AND COFACTOR- TITLE 3 INDUCED CONFORMATIONAL CHANGES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAPDH; COMPND 5 EC: 1.2.1.12 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS GAPDH, SUBSTRATE, GAP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.YUN,C.-G.PARK,J.-Y.KIM,H.-W.PARK REVDAT 4 30-OCT-24 1DC4 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1DC4 1 VERSN REVDAT 2 03-AUG-04 1DC4 1 JRNL REVDAT 1 23-AUG-00 1DC4 0 JRNL AUTH M.YUN,C.-G.PARK,J.-Y.KIM,H.-W.PARK JRNL TITL STRUCTURAL ANALYSIS OF GLYCERALDEHYDE 3-PHOSPHATE JRNL TITL 2 DEHYDROGENASE FROM ESCHERICHIA COLI: DIRECT EVIDENCE OF JRNL TITL 3 SUBSTRATE BINDING AND COFACTOR-INDUCED CONFORMATIONAL JRNL TITL 4 CHANGES. JRNL REF BIOCHEMISTRY V. 39 10702 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10978154 JRNL DOI 10.1021/BI9927080 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1736 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : 1.376 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38926 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.680 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.36 REMARK 200 R MERGE FOR SHELL (I) : 0.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM CHLORIDE, TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.41000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 60.41000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.84000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.42000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.41000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.26000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.41000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.41000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.84000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 60.41000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 118.26000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 60.41000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 39.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 120.82000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 120.82000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN B 202 O HOH A 2230 6665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 172 CG MSE A 172 SE -0.212 REMARK 500 MSE A 228 CG MSE A 228 SE -0.226 REMARK 500 MSE B 172 CG MSE B 172 SE -0.209 REMARK 500 MSE B 228 CG MSE B 228 SE -0.224 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 203 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 ILE B 203 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 -34.80 -147.88 REMARK 500 ASP A 61 73.96 46.58 REMARK 500 ALA A 75 77.33 -165.00 REMARK 500 ALA A 80 -36.33 -37.99 REMARK 500 PHE A 99 75.91 -109.86 REMARK 500 THR A 119 40.92 -88.03 REMARK 500 ASP A 123 -141.12 -112.20 REMARK 500 ASN A 133 20.79 -150.03 REMARK 500 ALA A 138 56.56 -114.14 REMARK 500 GLN A 141 149.55 -36.10 REMARK 500 ALA A 147 -142.96 61.82 REMARK 500 ASP A 186 107.79 -45.67 REMARK 500 SER A 189 57.46 -151.06 REMARK 500 ALA A 211 -84.84 -37.54 REMARK 500 LEU A 225 130.55 -172.43 REMARK 500 THR A 226 -169.82 -123.91 REMARK 500 PRO A 233 29.26 -63.65 REMARK 500 VAL A 237 111.28 70.04 REMARK 500 SER A 238 -167.32 -107.38 REMARK 500 VAL A 270 -67.42 -95.96 REMARK 500 SER A 290 101.34 -163.18 REMARK 500 TYR A 311 137.82 -175.97 REMARK 500 ASN A 313 -6.19 -55.43 REMARK 500 GLU A 314 -65.96 -107.08 REMARK 500 PHE B 8 38.89 -96.02 REMARK 500 ASP B 32 154.47 174.27 REMARK 500 ALA B 75 95.48 -171.54 REMARK 500 THR B 119 49.39 -90.06 REMARK 500 ASP B 123 -142.14 -95.38 REMARK 500 ASN B 133 37.19 -157.63 REMARK 500 GLN B 141 129.98 -39.14 REMARK 500 ALA B 147 -152.99 57.81 REMARK 500 ASP B 186 109.43 -40.48 REMARK 500 SER B 189 71.87 -150.03 REMARK 500 ALA B 210 -41.88 -21.12 REMARK 500 ALA B 211 -96.83 -19.35 REMARK 500 MSE B 228 -158.78 -141.25 REMARK 500 PRO B 233 42.26 -71.75 REMARK 500 VAL B 237 116.18 74.29 REMARK 500 SER B 238 -169.69 -113.70 REMARK 500 SER B 290 98.22 -162.59 REMARK 500 ASP B 302 6.50 -69.24 REMARK 500 ASN B 313 -14.37 -49.11 REMARK 500 GLU B 314 -62.77 -101.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P B 350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DC3 RELATED DB: PDB REMARK 900 RELATED ID: 1DC5 RELATED DB: PDB REMARK 900 RELATED ID: 1DC6 RELATED DB: PDB DBREF 1DC4 A 0 330 UNP P0A9B2 G3P1_ECOLI 1 330 DBREF 1DC4 B 0 330 UNP P0A9B2 G3P1_ECOLI 1 330 SEQADV 1DC4 MSE A 40 UNP P0A9B2 MET 40 MODIFIED RESIDUE SEQADV 1DC4 MSE A 43 UNP P0A9B2 MET 43 MODIFIED RESIDUE SEQADV 1DC4 MSE A 118 UNP P0A9B2 MET 118 MODIFIED RESIDUE SEQADV 1DC4 MSE A 127 UNP P0A9B2 MET 128 MODIFIED RESIDUE SEQADV 1DC4 MSE A 172 UNP P0A9B2 MET 172 MODIFIED RESIDUE SEQADV 1DC4 MSE A 228 UNP P0A9B2 MET 228 MODIFIED RESIDUE SEQADV 1DC4 MSE A 267 UNP P0A9B2 MET 267 MODIFIED RESIDUE SEQADV 1DC4 MSE B 40 UNP P0A9B2 MET 40 MODIFIED RESIDUE SEQADV 1DC4 MSE B 43 UNP P0A9B2 MET 43 MODIFIED RESIDUE SEQADV 1DC4 MSE B 118 UNP P0A9B2 MET 118 MODIFIED RESIDUE SEQADV 1DC4 MSE B 127 UNP P0A9B2 MET 128 MODIFIED RESIDUE SEQADV 1DC4 MSE B 172 UNP P0A9B2 MET 172 MODIFIED RESIDUE SEQADV 1DC4 MSE B 228 UNP P0A9B2 MET 228 MODIFIED RESIDUE SEQADV 1DC4 MSE B 267 UNP P0A9B2 MET 267 MODIFIED RESIDUE SEQRES 1 A 330 THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 A 330 ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP ILE SEQRES 3 A 330 GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP TYR SEQRES 4 A 330 MSE ALA TYR MSE LEU LYS TYR ASP SER THR HIS GLY ARG SEQRES 5 A 330 PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU ILE SEQRES 6 A 330 VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG ASP SEQRES 7 A 330 PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP VAL SEQRES 8 A 330 VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU THR SEQRES 9 A 330 ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL VAL SEQRES 10 A 330 MSE THR GLY PRO SER LYS ASP ASN THR PRO MSE PHE VAL SEQRES 11 A 330 LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP ILE SEQRES 12 A 330 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 A 330 LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE GLU SEQRES 14 A 330 GLY LEU MSE THR THR VAL HIS ALA THR THR ALA THR GLN SEQRES 15 A 330 LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG GLY SEQRES 16 A 330 GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER THR SEQRES 17 A 330 GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU LEU SEQRES 18 A 330 ASN GLY LYS LEU THR GLY MSE ALA PHE ARG VAL PRO THR SEQRES 19 A 330 PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLU SEQRES 20 A 330 LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL LYS SEQRES 21 A 330 ALA ALA ALA GLU GLY GLU MSE LYS GLY VAL LEU GLY TYR SEQRES 22 A 330 THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY GLU SEQRES 23 A 330 VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE ALA SEQRES 24 A 330 LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR ASP SEQRES 25 A 330 ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU ILE SEQRES 26 A 330 ALA HIS ILE SER LYS SEQRES 1 B 330 THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 B 330 ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP ILE SEQRES 3 B 330 GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP TYR SEQRES 4 B 330 MSE ALA TYR MSE LEU LYS TYR ASP SER THR HIS GLY ARG SEQRES 5 B 330 PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU ILE SEQRES 6 B 330 VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG ASP SEQRES 7 B 330 PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP VAL SEQRES 8 B 330 VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU THR SEQRES 9 B 330 ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL VAL SEQRES 10 B 330 MSE THR GLY PRO SER LYS ASP ASN THR PRO MSE PHE VAL SEQRES 11 B 330 LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP ILE SEQRES 12 B 330 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 B 330 LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE GLU SEQRES 14 B 330 GLY LEU MSE THR THR VAL HIS ALA THR THR ALA THR GLN SEQRES 15 B 330 LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG GLY SEQRES 16 B 330 GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER THR SEQRES 17 B 330 GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU LEU SEQRES 18 B 330 ASN GLY LYS LEU THR GLY MSE ALA PHE ARG VAL PRO THR SEQRES 19 B 330 PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLU SEQRES 20 B 330 LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL LYS SEQRES 21 B 330 ALA ALA ALA GLU GLY GLU MSE LYS GLY VAL LEU GLY TYR SEQRES 22 B 330 THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY GLU SEQRES 23 B 330 VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE ALA SEQRES 24 B 330 LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR ASP SEQRES 25 B 330 ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU ILE SEQRES 26 B 330 ALA HIS ILE SER LYS MODRES 1DC4 MSE A 40 MET SELENOMETHIONINE MODRES 1DC4 MSE A 43 MET SELENOMETHIONINE MODRES 1DC4 MSE A 118 MET SELENOMETHIONINE MODRES 1DC4 MSE A 127 MET SELENOMETHIONINE MODRES 1DC4 MSE A 172 MET SELENOMETHIONINE MODRES 1DC4 MSE A 228 MET SELENOMETHIONINE MODRES 1DC4 MSE A 267 MET SELENOMETHIONINE MODRES 1DC4 MSE B 40 MET SELENOMETHIONINE MODRES 1DC4 MSE B 43 MET SELENOMETHIONINE MODRES 1DC4 MSE B 118 MET SELENOMETHIONINE MODRES 1DC4 MSE B 127 MET SELENOMETHIONINE MODRES 1DC4 MSE B 172 MET SELENOMETHIONINE MODRES 1DC4 MSE B 228 MET SELENOMETHIONINE MODRES 1DC4 MSE B 267 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 43 8 HET MSE A 118 8 HET MSE A 127 8 HET MSE A 172 8 HET MSE A 228 8 HET MSE A 267 8 HET MSE B 40 8 HET MSE B 43 8 HET MSE B 118 8 HET MSE B 127 8 HET MSE B 172 8 HET MSE B 228 8 HET MSE B 267 8 HET G3P A 350 10 HET G3P B 350 10 HETNAM MSE SELENOMETHIONINE HETNAM G3P SN-GLYCEROL-3-PHOSPHATE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 G3P 2(C3 H9 O6 P) FORMUL 5 HOH *241(H2 O) HELIX 1 1 GLY A 9 LYS A 21 1 13 HELIX 2 2 ASP A 36 TYR A 46 1 11 HELIX 3 3 ASP A 78 LEU A 82 5 5 HELIX 4 4 LYS A 83 GLY A 88 1 6 HELIX 5 5 THR A 101 ARG A 106 1 6 HELIX 6 6 ARG A 106 ALA A 111 1 6 HELIX 7 7 ASN A 133 TYR A 137 5 5 HELIX 8 8 SER A 148 GLY A 166 1 19 HELIX 9 9 TRP A 193 ARG A 197 5 5 HELIX 10 10 LYS A 212 LEU A 218 1 7 HELIX 11 11 PRO A 219 ASN A 222 5 4 HELIX 12 12 THR A 251 GLY A 265 1 15 HELIX 13 13 VAL A 279 ASN A 284 5 6 HELIX 14 14 GLU A 314 SER A 329 1 16 HELIX 15 15 GLY B 9 ARG B 22 1 14 HELIX 16 16 ASP B 36 TYR B 46 1 11 HELIX 17 17 ASP B 78 LEU B 82 5 5 HELIX 18 18 LYS B 83 GLY B 88 1 6 HELIX 19 19 THR B 101 ALA B 111 1 11 HELIX 20 20 ASN B 133 TYR B 137 5 5 HELIX 21 21 SER B 148 GLY B 166 1 19 HELIX 22 22 TRP B 193 ARG B 197 5 5 HELIX 23 23 GLY B 209 LEU B 218 1 10 HELIX 24 24 PRO B 219 ASN B 222 5 4 HELIX 25 25 THR B 251 GLY B 265 1 15 HELIX 26 26 VAL B 279 ASN B 284 5 6 HELIX 27 27 GLU B 314 LYS B 330 1 17 SHEET 1 A 8 VAL A 59 LYS A 60 0 SHEET 2 A 8 HIS A 63 VAL A 66 -1 O HIS A 63 N LYS A 60 SHEET 3 A 8 LYS A 69 THR A 74 -1 O LYS A 69 N VAL A 66 SHEET 4 A 8 ILE A 25 ASN A 31 1 O VAL A 28 N ARG A 72 SHEET 5 A 8 ILE A 1 ASN A 6 1 O ILE A 1 N GLU A 26 SHEET 6 A 8 VAL A 91 GLU A 94 1 N VAL A 91 O LYS A 2 SHEET 7 A 8 LYS A 115 MSE A 118 1 O LYS A 115 N VAL A 92 SHEET 8 A 8 ILE A 143 SER A 145 1 O VAL A 144 N MSE A 118 SHEET 1 B 8 VAL B 57 LYS B 60 0 SHEET 2 B 8 HIS B 63 VAL B 66 -1 O HIS B 63 N LYS B 60 SHEET 3 B 8 LYS B 69 THR B 74 -1 O LYS B 69 N VAL B 66 SHEET 4 B 8 ILE B 25 ASN B 31 1 O VAL B 28 N ARG B 72 SHEET 5 B 8 ILE B 1 ASN B 6 1 O ILE B 1 N GLU B 26 SHEET 6 B 8 VAL B 91 GLU B 94 1 O VAL B 91 N GLY B 4 SHEET 7 B 8 LYS B 115 MSE B 118 1 O LYS B 115 N VAL B 92 SHEET 8 B 8 ILE B 143 SER B 145 1 O VAL B 144 N MSE B 118 SHEET 1 C 7 ILE B 204 SER B 206 0 SHEET 2 C 7 LEU B 225 VAL B 232 -1 O ALA B 229 N SER B 206 SHEET 3 C 7 ILE B 167 ALA B 177 1 O GLY B 170 N THR B 226 SHEET 4 C 7 SER B 238 LEU B 246 -1 O VAL B 239 N VAL B 175 SHEET 5 C 7 PHE B 304 TYR B 311 -1 O VAL B 305 N VAL B 244 SHEET 6 C 7 SER B 290 ASP B 293 -1 O VAL B 291 N TRP B 310 SHEET 7 C 7 LEU B 271 THR B 274 1 N GLY B 272 O SER B 290 SHEET 1 D 6 ILE B 204 SER B 206 0 SHEET 2 D 6 LEU B 225 VAL B 232 -1 O ALA B 229 N SER B 206 SHEET 3 D 6 ILE B 167 ALA B 177 1 O GLY B 170 N THR B 226 SHEET 4 D 6 SER B 238 LEU B 246 -1 O VAL B 239 N VAL B 175 SHEET 5 D 6 PHE B 304 TYR B 311 -1 O VAL B 305 N VAL B 244 SHEET 6 D 6 ILE B 298 ASN B 301 -1 O ILE B 298 N LYS B 306 LINK C TYR A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N ALA A 41 1555 1555 1.32 LINK C TYR A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N LEU A 44 1555 1555 1.33 LINK C VAL A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N THR A 119 1555 1555 1.33 LINK C PRO A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N PHE A 128 1555 1555 1.33 LINK SG CYS A 149 C1 G3P A 350 1555 1555 1.82 LINK C LEU A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N THR A 173 1555 1555 1.33 LINK C GLY A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N ALA A 229 1555 1555 1.33 LINK C GLU A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N LYS A 268 1555 1555 1.33 LINK C TYR B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N ALA B 41 1555 1555 1.33 LINK C TYR B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N LEU B 44 1555 1555 1.32 LINK C VAL B 117 N MSE B 118 1555 1555 1.32 LINK C MSE B 118 N THR B 119 1555 1555 1.33 LINK C PRO B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N PHE B 128 1555 1555 1.33 LINK SG CYS B 149 C1 G3P B 350 1555 1555 1.82 LINK C LEU B 171 N MSE B 172 1555 1555 1.33 LINK C MSE B 172 N THR B 173 1555 1555 1.33 LINK C GLY B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N ALA B 229 1555 1555 1.33 LINK C GLU B 266 N MSE B 267 1555 1555 1.33 LINK C MSE B 267 N LYS B 268 1555 1555 1.33 SITE 1 AC1 8 SER A 148 CYS A 149 THR A 150 HIS A 176 SITE 2 AC1 8 THR A 179 THR A 208 GLY A 209 HOH A2126 SITE 1 AC2 8 SER B 148 CYS B 149 THR B 150 HIS B 176 SITE 2 AC2 8 THR B 179 THR B 208 GLY B 209 HOH B2125 CRYST1 120.820 120.820 157.680 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006342 0.00000