data_1DCD # _entry.id 1DCD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DCD pdb_00001dcd 10.2210/pdb1dcd/pdb RCSB RCSB000691 ? ? WWPDB D_1000000691 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DCD _pdbx_database_status.recvd_initial_deposition_date 1999-03-20 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Archer, M.' 1 'Carvalho, A.L.' 2 'Teixeira, S.' 3 'Romao, M.J.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural studies by X-ray diffraction on metal substituted desulforedoxin, a rubredoxin-type protein.' 'Protein Sci.' 8 1536 1545 1999 PRCIEI US 0961-8368 0795 ? 10422844 ? 1 ;Crystal structure of desulforedoxin from Desulfovibrio gigas determined at 1.8 A resolution: a novel non-heme iron protein structure. ; J.Mol.Biol. 251 690 702 1995 JMOBAK UK 0022-2836 0070 ? 7666420 10.1006/jmbi.1995.0465 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Archer, M.' 1 ? primary 'Carvalho, A.L.' 2 ? primary 'Teixeira, S.' 3 ? primary 'Moura, I.' 4 ? primary 'Moura, J.J.' 5 ? primary 'Rusnak, F.' 6 ? primary 'Romao, M.J.' 7 ? 1 'Archer, M.' 8 ? 1 'Huber, R.' 9 ? 1 'Tavares, P.' 10 ? 1 'Moura, I.' 11 ? 1 'Moura, J.J.' 12 ? 1 'Carrondo, M.A.' 13 ? 1 'Sieker, L.C.' 14 ? 1 'LeGall, J.' 15 ? 1 'Romao, M.J.' 16 ? # _cell.entry_id 1DCD _cell.length_a 27.950 _cell.length_b 27.950 _cell.length_c 130.940 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DCD _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (DESULFOREDOXIN)' 3807.350 2 ? ? ? ? 2 non-polymer syn 'CADMIUM ION' 112.411 2 ? ? ? ? 3 water nat water 18.015 53 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ANEGDVYKCELCGQVVKVLEEGGGTLVCCGEDMVKQ _entity_poly.pdbx_seq_one_letter_code_can ANEGDVYKCELCGQVVKVLEEGGGTLVCCGEDMVKQ _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASN n 1 3 GLU n 1 4 GLY n 1 5 ASP n 1 6 VAL n 1 7 TYR n 1 8 LYS n 1 9 CYS n 1 10 GLU n 1 11 LEU n 1 12 CYS n 1 13 GLY n 1 14 GLN n 1 15 VAL n 1 16 VAL n 1 17 LYS n 1 18 VAL n 1 19 LEU n 1 20 GLU n 1 21 GLU n 1 22 GLY n 1 23 GLY n 1 24 GLY n 1 25 THR n 1 26 LEU n 1 27 VAL n 1 28 CYS n 1 29 CYS n 1 30 GLY n 1 31 GLU n 1 32 ASP n 1 33 MET n 1 34 VAL n 1 35 LYS n 1 36 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Desulfovibrio _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio gigas' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 879 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOPLASM _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene DSR _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location CYTOPLASM _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DESR_DESGI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00273 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DCD A 1 ? 36 ? P00273 2 ? 37 ? 1 36 2 1 1DCD B 1 ? 36 ? P00273 2 ? 37 ? 1 36 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DCD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.9 _exptl_crystal.density_percent_sol 35 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '30% ETHANOL, 0.1 M SODIUM ACETATE PH 5, 0.2 M CACL2, pH 5.0' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 277 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DCD _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 14.8 _reflns.d_resolution_high 1.98 _reflns.number_obs 4403 _reflns.number_all 4403 _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.115 _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.4 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.98 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 96.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.432 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1DCD _refine.ls_number_reflns_obs 4342 _refine.ls_number_reflns_all 4342 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.80 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.7 _refine.ls_R_factor_obs 0.1890000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 2325 _refine.ls_number_restraints 2656 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'GEOMETRIC RESTRAINTS WERE APPLIED TO THE METAL CENTER (DFIX CD S 2.55 A)' _refine.pdbx_starting_model 'PDB ENTRY 1DXG' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DCD _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 2 _refine_analyze.occupancy_sum_hydrogen 0.00 _refine_analyze.occupancy_sum_non_hydrogen 576.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 522 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 577 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 14.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1DCD _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1890000 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1750000 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 3148 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.939027 _struct_ncs_oper.matrix[1][2] -0.226955 _struct_ncs_oper.matrix[1][3] -0.258303 _struct_ncs_oper.matrix[2][1] -0.228768 _struct_ncs_oper.matrix[2][2] -0.148457 _struct_ncs_oper.matrix[2][3] 0.962094 _struct_ncs_oper.matrix[3][1] -0.256699 _struct_ncs_oper.matrix[3][2] 0.962524 _struct_ncs_oper.matrix[3][3] 0.087485 _struct_ncs_oper.vector[1] 47.12950 _struct_ncs_oper.vector[2] -24.85730 _struct_ncs_oper.vector[3] 33.36160 # _struct.entry_id 1DCD _struct.title 'DESULFOREDOXIN COMPLEXED WITH CD2+' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DCD _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'RUBREDOXIN TYPE PROTEIN, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 9 SG ? ? ? 1_555 C CD . CD ? ? A CYS 9 A CD 37 1_555 ? ? ? ? ? ? ? 2.522 ? ? metalc2 metalc ? ? A CYS 12 SG ? ? ? 1_555 C CD . CD ? ? A CYS 12 A CD 37 1_555 ? ? ? ? ? ? ? 2.547 ? ? metalc3 metalc ? ? A CYS 28 SG ? ? ? 1_555 C CD . CD ? ? A CYS 28 A CD 37 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc4 metalc ? ? A CYS 29 SG ? ? ? 1_555 C CD . CD ? ? A CYS 29 A CD 37 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc5 metalc ? ? B CYS 9 SG ? ? ? 1_555 D CD . CD ? ? B CYS 9 B CD 37 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc6 metalc ? ? B CYS 12 SG ? ? ? 1_555 D CD . CD ? ? B CYS 12 B CD 37 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc7 metalc ? ? B CYS 28 SG ? ? ? 1_555 D CD . CD ? ? B CYS 28 B CD 37 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc8 metalc ? ? B CYS 29 SG ? ? ? 1_555 D CD . CD ? ? B CYS 29 B CD 37 1_555 ? ? ? ? ? ? ? 2.541 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? LYS A 8 ? VAL A 6 LYS A 8 A 2 VAL A 15 ? LYS A 17 ? VAL A 15 LYS A 17 B 1 VAL B 6 ? LYS B 8 ? VAL B 6 LYS B 8 B 2 VAL B 15 ? LYS B 17 ? VAL B 15 LYS B 17 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 7 ? O TYR A 7 N VAL A 16 ? N VAL A 16 B 1 2 O TYR B 7 ? O TYR B 7 N VAL B 16 ? N VAL B 16 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details CDA Author ? ? ? ? 4 'CDS(CYS)4 CLUSTER (TETRAHEDRAL COORDINATION)' CDB Author ? ? ? ? 4 'CDS(CYS)4 CLUSTER (TETRAHEDRAL COORDINATION)' AC1 Software A CD 37 ? 4 'BINDING SITE FOR RESIDUE CD A 37' AC2 Software B CD 37 ? 4 'BINDING SITE FOR RESIDUE CD B 37' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 CDA 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 2 CDA 4 CYS A 12 ? CYS A 12 . ? 1_555 ? 3 CDA 4 CYS A 28 ? CYS A 28 . ? 1_555 ? 4 CDA 4 CYS A 29 ? CYS A 29 . ? 1_555 ? 5 CDB 4 CYS B 9 ? CYS B 9 . ? 1_555 ? 6 CDB 4 CYS B 12 ? CYS B 12 . ? 1_555 ? 7 CDB 4 CYS B 28 ? CYS B 28 . ? 1_555 ? 8 CDB 4 CYS B 29 ? CYS B 29 . ? 1_555 ? 9 AC1 4 CYS A 9 ? CYS A 9 . ? 1_555 ? 10 AC1 4 CYS A 12 ? CYS A 12 . ? 1_555 ? 11 AC1 4 CYS A 28 ? CYS A 28 . ? 1_555 ? 12 AC1 4 CYS A 29 ? CYS A 29 . ? 1_555 ? 13 AC2 4 CYS B 9 ? CYS B 9 . ? 1_555 ? 14 AC2 4 CYS B 12 ? CYS B 12 . ? 1_555 ? 15 AC2 4 CYS B 28 ? CYS B 28 . ? 1_555 ? 16 AC2 4 CYS B 29 ? CYS B 29 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DCD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DCD _atom_sites.fract_transf_matrix[1][1] 0.035778 _atom_sites.fract_transf_matrix[1][2] 0.020656 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041313 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007637 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 GLN 36 36 36 GLN GLN A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 ASP 5 5 5 ASP ASP B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 TYR 7 7 7 TYR TYR B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 CYS 9 9 9 CYS CYS B . n B 1 10 GLU 10 10 10 GLU GLU B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 CYS 12 12 12 CYS CYS B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLN 14 14 14 GLN GLN B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 GLU 20 20 20 GLU GLU B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 GLY 23 23 23 GLY GLY B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 THR 25 25 25 THR THR B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 CYS 28 28 28 CYS CYS B . n B 1 29 CYS 29 29 29 CYS CYS B . n B 1 30 GLY 30 30 30 GLY GLY B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 MET 33 33 33 MET MET B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 GLN 36 36 36 GLN GLN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD 1 37 37 CD CD A . D 2 CD 1 37 37 CD CD B . E 3 HOH 1 100 100 HOH HOH A . E 3 HOH 2 101 101 HOH HOH A . E 3 HOH 3 102 102 HOH HOH A . E 3 HOH 4 106 106 HOH HOH A . E 3 HOH 5 107 107 HOH HOH A . E 3 HOH 6 108 108 HOH HOH A . E 3 HOH 7 114 114 HOH HOH A . E 3 HOH 8 116 116 HOH HOH A . E 3 HOH 9 118 118 HOH HOH A . E 3 HOH 10 120 120 HOH HOH A . E 3 HOH 11 121 121 HOH HOH A . E 3 HOH 12 122 122 HOH HOH A . E 3 HOH 13 124 124 HOH HOH A . E 3 HOH 14 125 125 HOH HOH A . E 3 HOH 15 126 126 HOH HOH A . E 3 HOH 16 130 130 HOH HOH A . E 3 HOH 17 131 131 HOH HOH A . E 3 HOH 18 132 132 HOH HOH A . E 3 HOH 19 135 135 HOH HOH A . E 3 HOH 20 136 136 HOH HOH A . E 3 HOH 21 137 137 HOH HOH A . E 3 HOH 22 141 141 HOH HOH A . E 3 HOH 23 142 142 HOH HOH A . E 3 HOH 24 143 143 HOH HOH A . E 3 HOH 25 144 144 HOH HOH A . E 3 HOH 26 145 145 HOH HOH A . E 3 HOH 27 146 146 HOH HOH A . E 3 HOH 28 147 147 HOH HOH A . E 3 HOH 29 150 150 HOH HOH A . E 3 HOH 30 152 152 HOH HOH A . F 3 HOH 1 103 103 HOH HOH B . F 3 HOH 2 104 104 HOH HOH B . F 3 HOH 3 105 105 HOH HOH B . F 3 HOH 4 109 109 HOH HOH B . F 3 HOH 5 110 110 HOH HOH B . F 3 HOH 6 111 111 HOH HOH B . F 3 HOH 7 112 112 HOH HOH B . F 3 HOH 8 113 113 HOH HOH B . F 3 HOH 9 115 115 HOH HOH B . F 3 HOH 10 117 117 HOH HOH B . F 3 HOH 11 119 119 HOH HOH B . F 3 HOH 12 123 123 HOH HOH B . F 3 HOH 13 127 127 HOH HOH B . F 3 HOH 14 128 128 HOH HOH B . F 3 HOH 15 129 129 HOH HOH B . F 3 HOH 16 133 133 HOH HOH B . F 3 HOH 17 134 134 HOH HOH B . F 3 HOH 18 138 138 HOH HOH B . F 3 HOH 19 139 139 HOH HOH B . F 3 HOH 20 140 140 HOH HOH B . F 3 HOH 21 148 148 HOH HOH B . F 3 HOH 22 149 149 HOH HOH B . F 3 HOH 23 151 151 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1630 ? 1 MORE -23 ? 1 'SSA (A^2)' 4020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 118 ? E HOH . 2 1 A HOH 126 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? C CD . ? A CD 37 ? 1_555 SG ? A CYS 12 ? A CYS 12 ? 1_555 106.7 ? 2 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? C CD . ? A CD 37 ? 1_555 SG ? A CYS 28 ? A CYS 28 ? 1_555 110.1 ? 3 SG ? A CYS 12 ? A CYS 12 ? 1_555 CD ? C CD . ? A CD 37 ? 1_555 SG ? A CYS 28 ? A CYS 28 ? 1_555 107.0 ? 4 SG ? A CYS 9 ? A CYS 9 ? 1_555 CD ? C CD . ? A CD 37 ? 1_555 SG ? A CYS 29 ? A CYS 29 ? 1_555 101.3 ? 5 SG ? A CYS 12 ? A CYS 12 ? 1_555 CD ? C CD . ? A CD 37 ? 1_555 SG ? A CYS 29 ? A CYS 29 ? 1_555 106.3 ? 6 SG ? A CYS 28 ? A CYS 28 ? 1_555 CD ? C CD . ? A CD 37 ? 1_555 SG ? A CYS 29 ? A CYS 29 ? 1_555 124.3 ? 7 SG ? B CYS 9 ? B CYS 9 ? 1_555 CD ? D CD . ? B CD 37 ? 1_555 SG ? B CYS 12 ? B CYS 12 ? 1_555 109.7 ? 8 SG ? B CYS 9 ? B CYS 9 ? 1_555 CD ? D CD . ? B CD 37 ? 1_555 SG ? B CYS 28 ? B CYS 28 ? 1_555 109.7 ? 9 SG ? B CYS 12 ? B CYS 12 ? 1_555 CD ? D CD . ? B CD 37 ? 1_555 SG ? B CYS 28 ? B CYS 28 ? 1_555 110.6 ? 10 SG ? B CYS 9 ? B CYS 9 ? 1_555 CD ? D CD . ? B CD 37 ? 1_555 SG ? B CYS 29 ? B CYS 29 ? 1_555 100.6 ? 11 SG ? B CYS 12 ? B CYS 12 ? 1_555 CD ? D CD . ? B CD 37 ? 1_555 SG ? B CYS 29 ? B CYS 29 ? 1_555 105.1 ? 12 SG ? B CYS 28 ? B CYS 28 ? 1_555 CD ? D CD . ? B CD 37 ? 1_555 SG ? B CYS 29 ? B CYS 29 ? 1_555 120.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-07-09 2 'Structure model' 1 1 2007-10-16 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2019-11-13 6 'Structure model' 1 5 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation 3 5 'Structure model' citation_author 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' struct_conn 9 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_citation.journal_volume' 3 5 'Structure model' '_citation.page_last' 4 5 'Structure model' '_citation.pdbx_database_id_PubMed' 5 5 'Structure model' '_citation.title' 6 5 'Structure model' '_citation_author.name' 7 6 'Structure model' '_database_2.pdbx_DOI' 8 6 'Structure model' '_database_2.pdbx_database_accession' 9 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 12 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 13 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 14 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 15 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 SHELXL refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CD CD CD N N 47 CYS N N N N 48 CYS CA C N R 49 CYS C C N N 50 CYS O O N N 51 CYS CB C N N 52 CYS SG S N N 53 CYS OXT O N N 54 CYS H H N N 55 CYS H2 H N N 56 CYS HA H N N 57 CYS HB2 H N N 58 CYS HB3 H N N 59 CYS HG H N N 60 CYS HXT H N N 61 GLN N N N N 62 GLN CA C N S 63 GLN C C N N 64 GLN O O N N 65 GLN CB C N N 66 GLN CG C N N 67 GLN CD C N N 68 GLN OE1 O N N 69 GLN NE2 N N N 70 GLN OXT O N N 71 GLN H H N N 72 GLN H2 H N N 73 GLN HA H N N 74 GLN HB2 H N N 75 GLN HB3 H N N 76 GLN HG2 H N N 77 GLN HG3 H N N 78 GLN HE21 H N N 79 GLN HE22 H N N 80 GLN HXT H N N 81 GLU N N N N 82 GLU CA C N S 83 GLU C C N N 84 GLU O O N N 85 GLU CB C N N 86 GLU CG C N N 87 GLU CD C N N 88 GLU OE1 O N N 89 GLU OE2 O N N 90 GLU OXT O N N 91 GLU H H N N 92 GLU H2 H N N 93 GLU HA H N N 94 GLU HB2 H N N 95 GLU HB3 H N N 96 GLU HG2 H N N 97 GLU HG3 H N N 98 GLU HE2 H N N 99 GLU HXT H N N 100 GLY N N N N 101 GLY CA C N N 102 GLY C C N N 103 GLY O O N N 104 GLY OXT O N N 105 GLY H H N N 106 GLY H2 H N N 107 GLY HA2 H N N 108 GLY HA3 H N N 109 GLY HXT H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LEU N N N N 114 LEU CA C N S 115 LEU C C N N 116 LEU O O N N 117 LEU CB C N N 118 LEU CG C N N 119 LEU CD1 C N N 120 LEU CD2 C N N 121 LEU OXT O N N 122 LEU H H N N 123 LEU H2 H N N 124 LEU HA H N N 125 LEU HB2 H N N 126 LEU HB3 H N N 127 LEU HG H N N 128 LEU HD11 H N N 129 LEU HD12 H N N 130 LEU HD13 H N N 131 LEU HD21 H N N 132 LEU HD22 H N N 133 LEU HD23 H N N 134 LEU HXT H N N 135 LYS N N N N 136 LYS CA C N S 137 LYS C C N N 138 LYS O O N N 139 LYS CB C N N 140 LYS CG C N N 141 LYS CD C N N 142 LYS CE C N N 143 LYS NZ N N N 144 LYS OXT O N N 145 LYS H H N N 146 LYS H2 H N N 147 LYS HA H N N 148 LYS HB2 H N N 149 LYS HB3 H N N 150 LYS HG2 H N N 151 LYS HG3 H N N 152 LYS HD2 H N N 153 LYS HD3 H N N 154 LYS HE2 H N N 155 LYS HE3 H N N 156 LYS HZ1 H N N 157 LYS HZ2 H N N 158 LYS HZ3 H N N 159 LYS HXT H N N 160 MET N N N N 161 MET CA C N S 162 MET C C N N 163 MET O O N N 164 MET CB C N N 165 MET CG C N N 166 MET SD S N N 167 MET CE C N N 168 MET OXT O N N 169 MET H H N N 170 MET H2 H N N 171 MET HA H N N 172 MET HB2 H N N 173 MET HB3 H N N 174 MET HG2 H N N 175 MET HG3 H N N 176 MET HE1 H N N 177 MET HE2 H N N 178 MET HE3 H N N 179 MET HXT H N N 180 THR N N N N 181 THR CA C N S 182 THR C C N N 183 THR O O N N 184 THR CB C N R 185 THR OG1 O N N 186 THR CG2 C N N 187 THR OXT O N N 188 THR H H N N 189 THR H2 H N N 190 THR HA H N N 191 THR HB H N N 192 THR HG1 H N N 193 THR HG21 H N N 194 THR HG22 H N N 195 THR HG23 H N N 196 THR HXT H N N 197 TYR N N N N 198 TYR CA C N S 199 TYR C C N N 200 TYR O O N N 201 TYR CB C N N 202 TYR CG C Y N 203 TYR CD1 C Y N 204 TYR CD2 C Y N 205 TYR CE1 C Y N 206 TYR CE2 C Y N 207 TYR CZ C Y N 208 TYR OH O N N 209 TYR OXT O N N 210 TYR H H N N 211 TYR H2 H N N 212 TYR HA H N N 213 TYR HB2 H N N 214 TYR HB3 H N N 215 TYR HD1 H N N 216 TYR HD2 H N N 217 TYR HE1 H N N 218 TYR HE2 H N N 219 TYR HH H N N 220 TYR HXT H N N 221 VAL N N N N 222 VAL CA C N S 223 VAL C C N N 224 VAL O O N N 225 VAL CB C N N 226 VAL CG1 C N N 227 VAL CG2 C N N 228 VAL OXT O N N 229 VAL H H N N 230 VAL H2 H N N 231 VAL HA H N N 232 VAL HB H N N 233 VAL HG11 H N N 234 VAL HG12 H N N 235 VAL HG13 H N N 236 VAL HG21 H N N 237 VAL HG22 H N N 238 VAL HG23 H N N 239 VAL HXT H N N 240 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 GLN N CA sing N N 57 GLN N H sing N N 58 GLN N H2 sing N N 59 GLN CA C sing N N 60 GLN CA CB sing N N 61 GLN CA HA sing N N 62 GLN C O doub N N 63 GLN C OXT sing N N 64 GLN CB CG sing N N 65 GLN CB HB2 sing N N 66 GLN CB HB3 sing N N 67 GLN CG CD sing N N 68 GLN CG HG2 sing N N 69 GLN CG HG3 sing N N 70 GLN CD OE1 doub N N 71 GLN CD NE2 sing N N 72 GLN NE2 HE21 sing N N 73 GLN NE2 HE22 sing N N 74 GLN OXT HXT sing N N 75 GLU N CA sing N N 76 GLU N H sing N N 77 GLU N H2 sing N N 78 GLU CA C sing N N 79 GLU CA CB sing N N 80 GLU CA HA sing N N 81 GLU C O doub N N 82 GLU C OXT sing N N 83 GLU CB CG sing N N 84 GLU CB HB2 sing N N 85 GLU CB HB3 sing N N 86 GLU CG CD sing N N 87 GLU CG HG2 sing N N 88 GLU CG HG3 sing N N 89 GLU CD OE1 doub N N 90 GLU CD OE2 sing N N 91 GLU OE2 HE2 sing N N 92 GLU OXT HXT sing N N 93 GLY N CA sing N N 94 GLY N H sing N N 95 GLY N H2 sing N N 96 GLY CA C sing N N 97 GLY CA HA2 sing N N 98 GLY CA HA3 sing N N 99 GLY C O doub N N 100 GLY C OXT sing N N 101 GLY OXT HXT sing N N 102 HOH O H1 sing N N 103 HOH O H2 sing N N 104 LEU N CA sing N N 105 LEU N H sing N N 106 LEU N H2 sing N N 107 LEU CA C sing N N 108 LEU CA CB sing N N 109 LEU CA HA sing N N 110 LEU C O doub N N 111 LEU C OXT sing N N 112 LEU CB CG sing N N 113 LEU CB HB2 sing N N 114 LEU CB HB3 sing N N 115 LEU CG CD1 sing N N 116 LEU CG CD2 sing N N 117 LEU CG HG sing N N 118 LEU CD1 HD11 sing N N 119 LEU CD1 HD12 sing N N 120 LEU CD1 HD13 sing N N 121 LEU CD2 HD21 sing N N 122 LEU CD2 HD22 sing N N 123 LEU CD2 HD23 sing N N 124 LEU OXT HXT sing N N 125 LYS N CA sing N N 126 LYS N H sing N N 127 LYS N H2 sing N N 128 LYS CA C sing N N 129 LYS CA CB sing N N 130 LYS CA HA sing N N 131 LYS C O doub N N 132 LYS C OXT sing N N 133 LYS CB CG sing N N 134 LYS CB HB2 sing N N 135 LYS CB HB3 sing N N 136 LYS CG CD sing N N 137 LYS CG HG2 sing N N 138 LYS CG HG3 sing N N 139 LYS CD CE sing N N 140 LYS CD HD2 sing N N 141 LYS CD HD3 sing N N 142 LYS CE NZ sing N N 143 LYS CE HE2 sing N N 144 LYS CE HE3 sing N N 145 LYS NZ HZ1 sing N N 146 LYS NZ HZ2 sing N N 147 LYS NZ HZ3 sing N N 148 LYS OXT HXT sing N N 149 MET N CA sing N N 150 MET N H sing N N 151 MET N H2 sing N N 152 MET CA C sing N N 153 MET CA CB sing N N 154 MET CA HA sing N N 155 MET C O doub N N 156 MET C OXT sing N N 157 MET CB CG sing N N 158 MET CB HB2 sing N N 159 MET CB HB3 sing N N 160 MET CG SD sing N N 161 MET CG HG2 sing N N 162 MET CG HG3 sing N N 163 MET SD CE sing N N 164 MET CE HE1 sing N N 165 MET CE HE2 sing N N 166 MET CE HE3 sing N N 167 MET OXT HXT sing N N 168 THR N CA sing N N 169 THR N H sing N N 170 THR N H2 sing N N 171 THR CA C sing N N 172 THR CA CB sing N N 173 THR CA HA sing N N 174 THR C O doub N N 175 THR C OXT sing N N 176 THR CB OG1 sing N N 177 THR CB CG2 sing N N 178 THR CB HB sing N N 179 THR OG1 HG1 sing N N 180 THR CG2 HG21 sing N N 181 THR CG2 HG22 sing N N 182 THR CG2 HG23 sing N N 183 THR OXT HXT sing N N 184 TYR N CA sing N N 185 TYR N H sing N N 186 TYR N H2 sing N N 187 TYR CA C sing N N 188 TYR CA CB sing N N 189 TYR CA HA sing N N 190 TYR C O doub N N 191 TYR C OXT sing N N 192 TYR CB CG sing N N 193 TYR CB HB2 sing N N 194 TYR CB HB3 sing N N 195 TYR CG CD1 doub Y N 196 TYR CG CD2 sing Y N 197 TYR CD1 CE1 sing Y N 198 TYR CD1 HD1 sing N N 199 TYR CD2 CE2 doub Y N 200 TYR CD2 HD2 sing N N 201 TYR CE1 CZ doub Y N 202 TYR CE1 HE1 sing N N 203 TYR CE2 CZ sing Y N 204 TYR CE2 HE2 sing N N 205 TYR CZ OH sing N N 206 TYR OH HH sing N N 207 TYR OXT HXT sing N N 208 VAL N CA sing N N 209 VAL N H sing N N 210 VAL N H2 sing N N 211 VAL CA C sing N N 212 VAL CA CB sing N N 213 VAL CA HA sing N N 214 VAL C O doub N N 215 VAL C OXT sing N N 216 VAL CB CG1 sing N N 217 VAL CB CG2 sing N N 218 VAL CB HB sing N N 219 VAL CG1 HG11 sing N N 220 VAL CG1 HG12 sing N N 221 VAL CG1 HG13 sing N N 222 VAL CG2 HG21 sing N N 223 VAL CG2 HG22 sing N N 224 VAL CG2 HG23 sing N N 225 VAL OXT HXT sing N N 226 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DXG _pdbx_initial_refinement_model.details 'PDB ENTRY 1DXG' #