data_1DCG # _entry.id 1DCG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DCG pdb_00001dcg 10.2210/pdb1dcg/pdb RCSB ZDF002 ? ? WWPDB D_1000172731 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1989-01-09 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_symmetry' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_symmetry' 40 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DCG _pdbx_database_status.recvd_initial_deposition_date 1988-08-29 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gessner, R.V.' 1 'Frederick, C.A.' 2 'Quigley, G.J.' 3 'Rich, A.' 4 'Wang, A.H.-J.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;The molecular structure of the left-handed Z-DNA double helix at 1.0-A atomic resolution. Geometry, conformation, and ionic interactions of d(CGCGCG). ; J.Biol.Chem. 264 7921 7935 1989 JBCHA3 US 0021-9258 0071 ? 2722771 ? 1 'Molecular Structure of a Left-Handed Double Helical DNA Fragment at Atomic Resolution' Nature 282 680 686 1979 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gessner, R.V.' 1 ? primary 'Frederick, C.A.' 2 ? primary 'Quigley, G.J.' 3 ? primary 'Rich, A.' 4 ? primary 'Wang, A.H.' 5 ? 1 'Wang, A.H.-J.' 6 ? 1 'Quigley, G.J.' 7 ? 1 'Kolpak, F.J.' 8 ? 1 'Crawford, J.L.' 9 ? 1 'Van Boom, J.H.' 10 ? 1 'Van Der Marel, G.A.' 11 ? 1 'Rich, A.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 84 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 DC 1 7 7 DC C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DC 5 11 11 DC C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 16 16 MG MG A . D 2 MG 1 13 13 MG MG B . E 2 MG 1 14 14 MG MG B . F 2 MG 1 15 15 MG MG B . G 3 HOH 1 30 30 HOH HOH A . G 3 HOH 2 32 32 HOH HOH A . G 3 HOH 3 33 33 HOH HOH A . G 3 HOH 4 34 34 HOH HOH A . G 3 HOH 5 35 35 HOH HOH A . G 3 HOH 6 36 36 HOH HOH A . G 3 HOH 7 37 37 HOH HOH A . G 3 HOH 8 38 38 HOH HOH A . G 3 HOH 9 40 40 HOH HOH A . G 3 HOH 10 41 41 HOH HOH A . G 3 HOH 11 42 42 HOH HOH A . G 3 HOH 12 44 44 HOH HOH A . G 3 HOH 13 45 45 HOH HOH A . G 3 HOH 14 47 47 HOH HOH A . G 3 HOH 15 49 49 HOH HOH A . G 3 HOH 16 51 51 HOH HOH A . G 3 HOH 17 52 52 HOH HOH A . G 3 HOH 18 53 53 HOH HOH A . G 3 HOH 19 54 54 HOH HOH A . G 3 HOH 20 56 56 HOH HOH A . G 3 HOH 21 58 58 HOH HOH A . G 3 HOH 22 60 60 HOH HOH A . G 3 HOH 23 62 62 HOH HOH A . G 3 HOH 24 65 65 HOH HOH A . G 3 HOH 25 66 66 HOH HOH A . G 3 HOH 26 67 67 HOH HOH A . G 3 HOH 27 72 72 HOH HOH A . G 3 HOH 28 74 74 HOH HOH A . G 3 HOH 29 75 75 HOH HOH A . G 3 HOH 30 82 82 HOH HOH A . G 3 HOH 31 84 84 HOH HOH A . G 3 HOH 32 86 86 HOH HOH A . G 3 HOH 33 88 88 HOH HOH A . G 3 HOH 34 89 89 HOH HOH A . G 3 HOH 35 90 90 HOH HOH A . G 3 HOH 36 91 91 HOH HOH A . G 3 HOH 37 92 92 HOH HOH A . G 3 HOH 38 93 93 HOH HOH A . G 3 HOH 39 94 94 HOH HOH A . G 3 HOH 40 95 95 HOH HOH A . G 3 HOH 41 96 96 HOH HOH A . G 3 HOH 42 97 97 HOH HOH A . G 3 HOH 43 98 98 HOH HOH A . G 3 HOH 44 99 99 HOH HOH A . G 3 HOH 45 100 100 HOH HOH A . H 3 HOH 1 17 17 HOH HOH B . H 3 HOH 2 18 18 HOH HOH B . H 3 HOH 3 19 19 HOH HOH B . H 3 HOH 4 20 20 HOH HOH B . H 3 HOH 5 21 21 HOH HOH B . H 3 HOH 6 22 22 HOH HOH B . H 3 HOH 7 23 23 HOH HOH B . H 3 HOH 8 24 24 HOH HOH B . H 3 HOH 9 25 25 HOH HOH B . H 3 HOH 10 26 26 HOH HOH B . H 3 HOH 11 27 27 HOH HOH B . H 3 HOH 12 28 28 HOH HOH B . H 3 HOH 13 29 29 HOH HOH B . H 3 HOH 14 31 31 HOH HOH B . H 3 HOH 15 39 39 HOH HOH B . H 3 HOH 16 43 43 HOH HOH B . H 3 HOH 17 46 46 HOH HOH B . H 3 HOH 18 48 48 HOH HOH B . H 3 HOH 19 50 50 HOH HOH B . H 3 HOH 20 55 55 HOH HOH B . H 3 HOH 21 57 57 HOH HOH B . H 3 HOH 22 59 59 HOH HOH B . H 3 HOH 23 61 61 HOH HOH B . H 3 HOH 24 63 63 HOH HOH B . H 3 HOH 25 64 64 HOH HOH B . H 3 HOH 26 68 68 HOH HOH B . H 3 HOH 27 69 69 HOH HOH B . H 3 HOH 28 70 70 HOH HOH B . H 3 HOH 29 71 71 HOH HOH B . H 3 HOH 30 73 73 HOH HOH B . H 3 HOH 31 76 76 HOH HOH B . H 3 HOH 32 77 77 HOH HOH B . H 3 HOH 33 78 78 HOH HOH B . H 3 HOH 34 79 79 HOH HOH B . H 3 HOH 35 80 80 HOH HOH B . H 3 HOH 36 81 81 HOH HOH B . H 3 HOH 37 83 83 HOH HOH B . H 3 HOH 38 85 85 HOH HOH B . H 3 HOH 39 87 87 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DCG _cell.length_a 18.010 _cell.length_b 31.030 _cell.length_c 44.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DCG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1DCG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.73 _exptl_crystal.density_percent_sol 28.85 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DCG _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.000 _reflns.number_obs 10893 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DCG _refine.ls_number_reflns_obs 10893 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1750000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 328 _refine_hist.d_res_high 1.000 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1DCG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DCG _struct.title ;THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, CONFORMATION, AND IONIC INTERACTIONS OF D(CGCGCG) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DCG _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DCG _struct_ref.pdbx_db_accession 1DCG _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DCG A 1 ? 6 ? 1DCG 1 ? 6 ? 1 6 2 1 1DCG B 1 ? 6 ? 1DCG 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 3_756 E MG . MG ? ? A DG 6 B MG 14 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 16 A HOH 32 1_555 ? ? ? ? ? ? ? 2.154 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 16 A HOH 33 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 16 A HOH 34 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 16 A HOH 35 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 16 A HOH 36 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 16 A HOH 37 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc8 metalc ? ? G HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 30 B MG 15 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc9 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 13 B HOH 17 1_555 ? ? ? ? ? ? ? 2.184 ? ? metalc10 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 13 B HOH 18 1_555 ? ? ? ? ? ? ? 2.157 ? ? metalc11 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 13 B HOH 19 1_555 ? ? ? ? ? ? ? 2.163 ? ? metalc12 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 13 B HOH 20 1_555 ? ? ? ? ? ? ? 2.046 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 13 B HOH 21 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 13 B HOH 22 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc15 metalc ? ? E MG . MG ? ? ? 1_555 F MG . MG ? ? B MG 14 B MG 15 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc16 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 14 B HOH 23 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc17 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 14 B HOH 24 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc18 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 14 B HOH 25 1_555 ? ? ? ? ? ? ? 2.166 ? ? metalc19 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 14 B HOH 26 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 14 B HOH 29 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc21 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 26 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc22 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 27 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc23 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 28 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc24 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 29 1_555 ? ? ? ? ? ? ? 2.144 ? ? metalc25 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 15 B HOH 31 1_555 ? ? ? ? ? ? ? 2.230 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 3_756 MG ? E MG . ? B MG 14 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 130.2 ? 2 N7 ? A DG 6 ? A DG 6 ? 3_756 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 23 ? 1_555 90.2 ? 3 MG ? F MG . ? B MG 15 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 23 ? 1_555 139.4 ? 4 N7 ? A DG 6 ? A DG 6 ? 3_756 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 24 ? 1_555 84.2 ? 5 MG ? F MG . ? B MG 15 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 24 ? 1_555 94.2 ? 6 O ? H HOH . ? B HOH 23 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 24 ? 1_555 85.2 ? 7 N7 ? A DG 6 ? A DG 6 ? 3_756 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 25 ? 1_555 88.4 ? 8 MG ? F MG . ? B MG 15 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 25 ? 1_555 96.4 ? 9 O ? H HOH . ? B HOH 23 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 25 ? 1_555 87.2 ? 10 O ? H HOH . ? B HOH 24 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 25 ? 1_555 169.4 ? 11 N7 ? A DG 6 ? A DG 6 ? 3_756 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 26 ? 1_555 86.4 ? 12 MG ? F MG . ? B MG 15 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 26 ? 1_555 44.7 ? 13 O ? H HOH . ? B HOH 23 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 26 ? 1_555 165.8 ? 14 O ? H HOH . ? B HOH 24 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 26 ? 1_555 80.7 ? 15 O ? H HOH . ? B HOH 25 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 26 ? 1_555 106.4 ? 16 N7 ? A DG 6 ? A DG 6 ? 3_756 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 172.1 ? 17 MG ? F MG . ? B MG 15 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 48.5 ? 18 O ? H HOH . ? B HOH 23 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 92.0 ? 19 O ? H HOH . ? B HOH 24 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 103.5 ? 20 O ? H HOH . ? B HOH 25 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 84.1 ? 21 O ? H HOH . ? B HOH 26 ? 1_555 MG ? E MG . ? B MG 14 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 93.2 ? 22 O ? G HOH . ? A HOH 32 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 33 ? 1_555 174.1 ? 23 O ? G HOH . ? A HOH 32 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 34 ? 1_555 84.3 ? 24 O ? G HOH . ? A HOH 33 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 34 ? 1_555 90.0 ? 25 O ? G HOH . ? A HOH 32 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 35 ? 1_555 94.1 ? 26 O ? G HOH . ? A HOH 33 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 35 ? 1_555 90.8 ? 27 O ? G HOH . ? A HOH 34 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 35 ? 1_555 165.6 ? 28 O ? G HOH . ? A HOH 32 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 36 ? 1_555 79.3 ? 29 O ? G HOH . ? A HOH 33 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 36 ? 1_555 103.2 ? 30 O ? G HOH . ? A HOH 34 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 36 ? 1_555 95.6 ? 31 O ? G HOH . ? A HOH 35 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 36 ? 1_555 98.2 ? 32 O ? G HOH . ? A HOH 32 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 37 ? 1_555 87.5 ? 33 O ? G HOH . ? A HOH 33 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 37 ? 1_555 90.7 ? 34 O ? G HOH . ? A HOH 34 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 37 ? 1_555 90.4 ? 35 O ? G HOH . ? A HOH 35 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 37 ? 1_555 75.2 ? 36 O ? G HOH . ? A HOH 36 ? 1_555 MG ? C MG . ? A MG 16 ? 1_555 O ? G HOH . ? A HOH 37 ? 1_555 164.8 ? 37 O ? G HOH . ? A HOH 30 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 26 ? 1_555 101.4 ? 38 O ? G HOH . ? A HOH 30 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 27 ? 1_555 91.3 ? 39 O ? H HOH . ? B HOH 26 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 27 ? 1_555 165.3 ? 40 O ? G HOH . ? A HOH 30 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 28 ? 1_555 85.9 ? 41 O ? H HOH . ? B HOH 26 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 28 ? 1_555 81.0 ? 42 O ? H HOH . ? B HOH 27 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 28 ? 1_555 92.6 ? 43 O ? G HOH . ? A HOH 30 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 95.0 ? 44 O ? H HOH . ? B HOH 26 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 96.6 ? 45 O ? H HOH . ? B HOH 27 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 89.6 ? 46 O ? H HOH . ? B HOH 28 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 29 ? 1_555 177.6 ? 47 O ? G HOH . ? A HOH 30 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 171.4 ? 48 O ? H HOH . ? B HOH 26 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 77.7 ? 49 O ? H HOH . ? B HOH 27 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 88.7 ? 50 O ? H HOH . ? B HOH 28 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 85.5 ? 51 O ? H HOH . ? B HOH 29 ? 1_555 MG ? F MG . ? B MG 15 ? 1_555 O ? H HOH . ? B HOH 31 ? 1_555 93.7 ? 52 O ? H HOH . ? B HOH 17 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 18 ? 1_555 174.2 ? 53 O ? H HOH . ? B HOH 17 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 96.7 ? 54 O ? H HOH . ? B HOH 18 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 85.0 ? 55 O ? H HOH . ? B HOH 17 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 20 ? 1_555 88.7 ? 56 O ? H HOH . ? B HOH 18 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 20 ? 1_555 89.4 ? 57 O ? H HOH . ? B HOH 19 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 20 ? 1_555 174.2 ? 58 O ? H HOH . ? B HOH 17 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 21 ? 1_555 88.7 ? 59 O ? H HOH . ? B HOH 18 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 21 ? 1_555 85.9 ? 60 O ? H HOH . ? B HOH 19 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 21 ? 1_555 84.8 ? 61 O ? H HOH . ? B HOH 20 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 21 ? 1_555 93.2 ? 62 O ? H HOH . ? B HOH 17 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 22 ? 1_555 91.5 ? 63 O ? H HOH . ? B HOH 18 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 22 ? 1_555 94.0 ? 64 O ? H HOH . ? B HOH 19 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 22 ? 1_555 93.1 ? 65 O ? H HOH . ? B HOH 20 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 22 ? 1_555 89.0 ? 66 O ? H HOH . ? B HOH 21 ? 1_555 MG ? D MG . ? B MG 13 ? 1_555 O ? H HOH . ? B HOH 22 ? 1_555 177.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 13 ? 6 'BINDING SITE FOR RESIDUE MG B 13' AC2 Software B MG 14 ? 7 'BINDING SITE FOR RESIDUE MG B 14' AC3 Software B MG 15 ? 7 'BINDING SITE FOR RESIDUE MG B 15' AC4 Software A MG 16 ? 6 'BINDING SITE FOR RESIDUE MG A 16' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH B 17 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH B 18 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH B 19 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH B 20 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH B 21 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 22 . ? 1_555 ? 7 AC2 7 DG A 6 ? DG A 6 . ? 3_756 ? 8 AC2 7 MG F . ? MG B 15 . ? 1_555 ? 9 AC2 7 HOH H . ? HOH B 23 . ? 1_555 ? 10 AC2 7 HOH H . ? HOH B 24 . ? 1_555 ? 11 AC2 7 HOH H . ? HOH B 25 . ? 1_555 ? 12 AC2 7 HOH H . ? HOH B 26 . ? 1_555 ? 13 AC2 7 HOH H . ? HOH B 29 . ? 1_555 ? 14 AC3 7 HOH G . ? HOH A 30 . ? 1_555 ? 15 AC3 7 MG E . ? MG B 14 . ? 1_555 ? 16 AC3 7 HOH H . ? HOH B 26 . ? 1_555 ? 17 AC3 7 HOH H . ? HOH B 27 . ? 1_555 ? 18 AC3 7 HOH H . ? HOH B 28 . ? 1_555 ? 19 AC3 7 HOH H . ? HOH B 29 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH B 31 . ? 1_555 ? 21 AC4 6 HOH G . ? HOH A 32 . ? 1_555 ? 22 AC4 6 HOH G . ? HOH A 33 . ? 1_555 ? 23 AC4 6 HOH G . ? HOH A 34 . ? 1_555 ? 24 AC4 6 HOH G . ? HOH A 35 . ? 1_555 ? 25 AC4 6 HOH G . ? HOH A 36 . ? 1_555 ? 26 AC4 6 HOH G . ? HOH A 37 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OP1 B DC 11 ? ? 1_555 O B HOH 85 ? ? 4_466 2.02 2 1 O A HOH 65 ? ? 1_555 O A HOH 66 ? ? 3_746 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.555 1.512 0.043 0.007 N 2 1 "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 1.353 1.446 -0.093 0.010 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.333 1.391 -0.058 0.007 N 4 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.271 1.341 -0.070 0.010 N 5 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 1.562 1.512 0.050 0.007 N 6 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.456 1.516 -0.060 0.008 N 7 1 N7 A DG 4 ? ? C8 A DG 4 ? ? 1.353 1.305 0.048 0.006 N 8 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.326 1.374 -0.048 0.007 N 9 1 "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 1.582 1.519 0.063 0.010 N 10 1 P A DG 6 ? ? OP2 A DG 6 ? ? 1.321 1.485 -0.164 0.017 N 11 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.692 1.593 0.099 0.010 N 12 1 "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 1.568 1.512 0.056 0.007 N 13 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 1.421 1.516 -0.095 0.008 N 14 1 "C5'" B DC 9 ? ? "C4'" B DC 9 ? ? 1.570 1.512 0.058 0.007 N 15 1 "C2'" B DG 10 ? ? "C1'" B DG 10 ? ? 1.654 1.519 0.135 0.010 N 16 1 "C1'" B DG 10 ? ? N9 B DG 10 ? ? 1.373 1.468 -0.095 0.014 N 17 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.330 1.391 -0.061 0.007 N 18 1 N7 B DG 10 ? ? C8 B DG 10 ? ? 1.348 1.305 0.043 0.006 N 19 1 P B DC 11 ? ? "O5'" B DC 11 ? ? 1.654 1.593 0.061 0.010 N 20 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? 1.613 1.518 0.095 0.012 N 21 1 "O3'" B DC 11 ? ? "C3'" B DC 11 ? ? 1.366 1.419 -0.053 0.006 N 22 1 P B DG 12 ? ? OP1 B DG 12 ? ? 1.331 1.485 -0.154 0.017 N 23 1 "C2'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.590 1.519 0.071 0.010 N 24 1 "O4'" B DG 12 ? ? "C4'" B DG 12 ? ? 1.381 1.446 -0.065 0.010 N 25 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.346 1.391 -0.045 0.007 N 26 1 N7 B DG 12 ? ? C8 B DG 12 ? ? 1.343 1.305 0.038 0.006 N 27 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.323 1.374 -0.051 0.007 N 28 1 N9 B DG 12 ? ? C4 B DG 12 ? ? 1.427 1.375 0.052 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 101.40 104.50 -3.10 0.40 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.17 102.40 -6.23 0.80 N 3 1 N1 A DC 1 ? ? C2 A DC 1 ? ? N3 A DC 1 ? ? 114.90 119.20 -4.30 0.70 N 4 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 126.18 119.90 6.28 0.50 N 5 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.84 121.90 -3.06 0.40 N 6 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 115.00 118.80 -3.80 0.60 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 116.35 111.50 4.85 0.50 N 8 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.34 128.60 -4.26 0.60 N 9 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 103.24 108.00 -4.76 0.70 N 10 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.02 118.90 4.12 0.60 N 11 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 128.74 119.60 9.14 1.50 N 12 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 101.75 109.40 -7.65 0.80 N 13 1 N3 A DC 5 ? ? C4 A DC 5 ? ? C5 A DC 5 ? ? 119.11 121.90 -2.79 0.40 N 14 1 OP1 A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 136.47 119.60 16.87 1.50 N 15 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 99.01 109.40 -10.39 0.80 N 16 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.41 111.50 3.91 0.50 N 17 1 "O5'" B DC 7 ? ? "C5'" B DC 7 ? ? "C4'" B DC 7 ? ? 104.27 109.40 -5.13 0.80 N 18 1 C6 B DC 7 ? ? N1 B DC 7 ? ? C2 B DC 7 ? ? 122.98 120.30 2.68 0.40 N 19 1 N3 B DC 7 ? ? C4 B DC 7 ? ? C5 B DC 7 ? ? 119.00 121.90 -2.90 0.40 N 20 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 123.41 118.90 4.51 0.60 N 21 1 "O4'" B DG 8 ? ? "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? 100.84 104.50 -3.66 0.40 N 22 1 "C4'" B DG 8 ? ? "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? 111.22 103.10 8.12 0.90 N 23 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 116.35 111.50 4.85 0.50 N 24 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 114.93 119.90 -4.97 0.70 N 25 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 123.45 128.60 -5.15 0.60 N 26 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DC 9 ? ? 130.60 119.70 10.90 1.20 Y 27 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.45 108.30 2.15 0.30 N 28 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 116.29 111.50 4.79 0.50 N 29 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 113.65 110.80 2.85 0.40 N 30 1 C5 B DG 10 ? ? C6 B DG 10 ? ? O6 B DG 10 ? ? 124.48 128.60 -4.12 0.60 N 31 1 "O5'" B DC 11 ? ? P B DC 11 ? ? OP2 B DC 11 ? ? 117.91 110.70 7.21 1.20 N 32 1 C6 B DC 11 ? ? N1 B DC 11 ? ? C2 B DC 11 ? ? 122.99 120.30 2.69 0.40 N 33 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 103.60 109.40 -5.80 0.80 N 34 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 115.60 111.50 4.10 0.50 N 35 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 124.06 128.60 -4.54 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 MG MG MG N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 1DCG _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.273 -0.171 0.081 2.866 -0.156 1.645 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.212 -0.151 -0.009 -4.738 -4.723 3.030 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.287 -0.160 0.079 4.730 -0.693 2.259 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.194 -0.090 0.183 -4.352 -0.556 1.791 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.224 -0.114 0.038 3.332 -1.522 1.211 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.275 -0.060 0.143 -0.213 2.295 0.953 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 -0.039 5.291 3.681 -0.258 -3.855 -6.627 -20.391 -1.575 5.836 30.201 -2.023 -7.670 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.052 -1.069 3.292 -0.472 -4.075 -51.172 1.512 0.028 3.204 4.709 -0.546 -51.325 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.039 5.367 3.829 0.193 -3.231 -6.926 -24.365 1.242 5.735 25.025 1.495 -7.644 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 0.007 -0.839 3.319 0.466 -1.279 -52.503 1.032 0.039 3.299 1.446 0.527 -52.519 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.013 5.428 3.613 0.177 -1.393 -9.657 -28.557 0.501 4.348 8.215 1.043 -9.758 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 1DCG _atom_sites.fract_transf_matrix[1][1] 0.055525 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032227 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022321 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_