HEADER HYDROLASE (ENDORIBONUCLEASE) 20-FEB-96 1DET TITLE RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE T1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE T1; COMPND 5 EC: 3.1.27.3; COMPND 6 OTHER_DETAILS: THE G-CARBOXYL GROUP OF GLU 58 IS CARBOXYMETHYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE; SOURCE 3 ORGANISM_TAXID: 5062 KEYWDS HYDROLASE, ENDORIBONUCLEASE, NUCLEASE, ENDONUCLEASE, HYDROLASE KEYWDS 2 (ENDORIBONUCLEASE) EXPDTA X-RAY DIFFRACTION AUTHOR K.ISHIKAWA,E.SUZUKI,M.TANOKURA,K.TAKAHASHI REVDAT 3 05-JUN-24 1DET 1 REMARK LINK REVDAT 2 24-FEB-09 1DET 1 VERSN REVDAT 1 11-JUL-96 1DET 0 JRNL AUTH K.ISHIKAWA,E.SUZUKI,M.TANOKURA,K.TAKAHASHI JRNL TITL CRYSTAL STRUCTURE OF RIBONUCLEASE T1 CARBOXYMETHYLATED AT JRNL TITL 2 GLU58 IN COMPLEX WITH 2'-GMP. JRNL REF BIOCHEMISTRY V. 35 8329 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8679590 JRNL DOI 10.1021/BI960493D REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LENZ,H.W.CHOE,J.GRANZIN,U.HEINEMANN,W.SAENGER REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE TERNARY COMPLEX BETWEEN REMARK 1 TITL 2 RIBONUCLEASE T1, GUANOSINE 3',5'-BISPHOSPHATE AND INORGANIC REMARK 1 TITL 3 PHOSPHATE AT 0.19 NM RESOLUTION REMARK 1 REF EUR.J.BIOCHEM. V. 211 311 1993 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.LENZ,U.HEINEMANN,M.MASLOWSKA,W.SAENGER REMARK 1 TITL X-RAY ANALYSIS OF CUBIC CRYSTALS OF THE COMPLEX FORMED REMARK 1 TITL 2 BETWEEN RIBONUCLEASE T1 AND GUANOSINE-3',5'-BISPHOSPHATE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 47 521 1991 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 3 REMARK 1 AUTH U.HEINEMANN,W.SAENGER REMARK 1 TITL SPECIFIC PROTEIN-NUCLEIC ACID RECOGNITION IN RIBONUCLEASE REMARK 1 TITL 2 T1-2'-GUANYLIC ACID COMPLEX: AN X-RAY STUDY REMARK 1 REF NATURE V. 299 27 1982 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 10354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1940 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.045 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.055 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.015 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.191 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.180 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.196 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.234 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.900 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 17.700; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 26.000; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.424 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.424 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.547 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.995 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-95 REMARK 200 TEMPERATURE (KELVIN) : 288 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : WEIS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 44.34500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 44.34500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 44.34500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 44.34500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 44.34500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 44.34500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 218 O HOH A 223 2.10 REMARK 500 O HOH A 236 O HOH A 242 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 227 O HOH A 227 4545 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 GLU A 28 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 VAL A 33 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 VAL A 33 CG1 - CB - CG2 ANGL. DEV. = 12.0 DEGREES REMARK 500 TYR A 42 CB - CG - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR A 42 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 49 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 76 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 PHE A 100 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 71.19 45.29 REMARK 500 ASN A 44 44.49 70.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 30 O REMARK 620 2 HIS A 92 O 92.7 REMARK 620 3 ALA A 95 O 175.1 91.8 REMARK 620 4 HOH A 236 O 103.4 156.5 71.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 32 O REMARK 620 2 TYR A 45 O 93.5 REMARK 620 3 HOH A 220 O 99.5 93.8 REMARK 620 4 HOH A 268 O 164.9 90.1 95.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAT REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2GP A 105 DBREF 1DET A 1 104 UNP P00651 RNT1_ASPOR 27 130 SEQRES 1 A 104 ALA CYS ASP TYR THR CYS GLY SER ASN CYS TYR SER SER SEQRES 2 A 104 SER ASP VAL SER THR ALA GLN ALA ALA GLY TYR GLN LEU SEQRES 3 A 104 HIS GLU ASP GLY GLU THR VAL GLY SER ASN SER TYR PRO SEQRES 4 A 104 HIS LYS TYR ASN ASN TYR GLU GLY PHE ASP PHE SER VAL SEQRES 5 A 104 SER SER PRO TYR TYR CGA TRP PRO ILE LEU SER SER GLY SEQRES 6 A 104 ASP VAL TYR SER GLY GLY SER PRO GLY ALA ASP ARG VAL SEQRES 7 A 104 VAL PHE ASN GLU ASN ASN GLN LEU ALA GLY VAL ILE THR SEQRES 8 A 104 HIS THR GLY ALA SER GLY ASN ASN PHE VAL GLU CYS THR MODRES 1DET CGA A 58 GLU CARBOXYMETHYLATED GLUTAMIC ACID HET CGA A 58 13 HET NA A 106 1 HET NA A 107 1 HET 2GP A 105 24 HETNAM CGA CARBOXYMETHYLATED GLUTAMIC ACID HETNAM NA SODIUM ION HETNAM 2GP GUANOSINE-2'-MONOPHOSPHATE FORMUL 1 CGA C7 H11 N O6 FORMUL 2 NA 2(NA 1+) FORMUL 4 2GP C10 H14 N5 O8 P FORMUL 5 HOH *79(H2 O) HELIX 1 1 SER A 13 ASP A 29 1 17 SHEET 1 A 2 TYR A 4 CYS A 6 0 SHEET 2 A 2 ASN A 9 TYR A 11 -1 N TYR A 11 O TYR A 4 SHEET 1 B 4 HIS A 40 TYR A 42 0 SHEET 2 B 4 TYR A 56 PRO A 60 -1 SHEET 3 B 4 ASP A 76 ASN A 81 -1 N PHE A 80 O TYR A 57 SHEET 4 B 4 LEU A 86 THR A 91 -1 N ILE A 90 O ARG A 77 SSBOND 1 CYS A 2 CYS A 10 1555 1555 2.04 SSBOND 2 CYS A 6 CYS A 103 1555 1555 1.96 LINK C TYR A 57 N CGA A 58 1555 1555 1.31 LINK C CGA A 58 N TRP A 59 1555 1555 1.32 LINK O GLY A 30 NA NA A 106 1555 1555 2.41 LINK O THR A 32 NA NA A 107 20544 1555 2.58 LINK O TYR A 45 NA NA A 107 4545 1555 2.23 LINK O HIS A 92 NA NA A 106 23545 1555 2.31 LINK O ALA A 95 NA NA A 106 23545 1555 2.52 LINK NA NA A 106 O HOH A 236 1555 1555 2.14 LINK NA NA A 107 O HOH A 220 1555 20544 2.16 LINK NA NA A 107 O HOH A 268 1555 1555 2.47 CISPEP 1 TYR A 38 PRO A 39 0 -0.04 CISPEP 2 SER A 54 PRO A 55 0 3.27 SITE 1 CAT 4 HIS A 40 CGA A 58 ARG A 77 HIS A 92 SITE 1 AC1 5 GLY A 30 HIS A 92 ALA A 95 HOH A 206 SITE 2 AC1 5 HOH A 236 SITE 1 AC2 5 THR A 32 TYR A 45 HOH A 220 HOH A 256 SITE 2 AC2 5 HOH A 268 SITE 1 AC3 10 TYR A 42 ASN A 43 ASN A 44 TYR A 45 SITE 2 AC3 10 GLU A 46 CGA A 58 ASN A 98 PHE A 100 SITE 3 AC3 10 HOH A 231 HOH A 258 CRYST1 88.690 88.690 88.690 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011275 0.00000